RNA id: TU145140


Basic Information

Item Value
RNA id TU145140
length 419
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G107450
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 31162526 ~ 31163507 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccgctgctaaggttttggaggccctaagcataactggtcttatcatcgaagttactcaccagaaagggatgcatgggcctcatctttctgcttctttttcttcttctcagctccagactcaaaccgtcgcttcatagttgaattaccatttagtagcaacttcgcgcagtgaacttgtctcctgccaaactcaagtagcgttgctactttagttaggactaaggttgccagataagttacgatttttcatcctatttgtttattttattttaagtttttaacttacacaaatattgcactggacaagtttttgtatagaatggccacatacactttaaaaatggttaaacatgcgcaagatttagcgcctccatgcattttttgattatttatttgactggaaaatgtcacatctggca

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145138 lncRNA upstream 8827 31153480 ~ 31153699 (+) True G107448
TU145136 lncRNA upstream 10952 31150998 ~ 31151574 (+) True G107446
TU145120 lncRNA upstream 208117 30953299 ~ 30954409 (+) True G107432
TU145118 lncRNA upstream 231718 30930563 ~ 30930808 (+) True G107430
TU145112 lncRNA upstream 248653 30913537 ~ 30913873 (+) True G107424
TU145144 lncRNA downstream 14579 31178086 ~ 31178343 (+) True G107454
TU145153 lncRNA downstream 38490 31201997 ~ 31202224 (+) True G107463
TU145181 lncRNA downstream 125228 31288735 ~ 31289411 (+) True G107482
XM_022674977.1 mRNA upstream 451274 30672152 ~ 30711252 (+) True gart
XM_022674976.1 mRNA upstream 493782 30661999 ~ 30668744 (+) True LOC111193577
XM_022674380.1 mRNA upstream 615165 30540261 ~ 30547361 (+) True LOC111193471
XM_022674973.1 mRNA upstream 710925 29844100 ~ 30451601 (+) True ncam2
XM_007237759.3 mRNA downstream 97773 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 149233 31312740 ~ 31319149 (+) True adamts1
XM_007237757.3 mRNA downstream 162187 31325694 ~ 31341351 (+) True cyyr1
XM_022674980.1 mRNA downstream 183794 31347301 ~ 31402273 (+) False app
XM_022674979.1 mRNA downstream 183795 31347302 ~ 31402273 (+) True app
TU144751 other upstream 1381599 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 2442246 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 3095543 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 3140479 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5793087 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile