RNA id: XM_007228692.3


Basic Information

Item Value
RNA id XM_007228692.3
length 3766
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC103027494
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17950021 ~ 17962718 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAAACAGAGTCTCTTTACACTCGTTTATTAAACaatagagaagagaaagaatagTAAAACTCCTGTGTAAGGATCTGACCTGCTTCAGGAGCTTCATTCATCTGCTGGGGATGGATTATAATGGGGATGTATTGCAGTGAAGCTTGAGCAGTTTCACAGCGCTAACCATGGTGGTGTTATCGGACAACAGGCTGGGATCCCCCACAAACCAGCCTGCCAGACCACTTCAGGTTGGCTTCTATGAGATCATGCGGACACTGGGGAAGGGAAACTTTGCTGTGGTGAAACTGGCCAGACACAAAGTCACTAAAACACAGGTCGCCATTAAGATCATCGATAAAACCCGCTTGGATGCTGCCGATTTGGAGAAGCTCAACAGAGAGGTTCAAATTATGAAGCTTCTGAGCCACCCGCACATCATCAAACTCTACCAGGTTATGGAAACCAAAAACATGCTGTATATTGTAACAGAGTATGCAAAGAATGGGGAGATGTTTGATTACCTTGCTTCCAACGGACGTCTGAGTGAGGGAGAAGCTCGTAGAACATTCTggcaaatcctcacagcagtggaGTACTGCCACAGGCACCGCATTGTGCATCGAGACCTTAAAGCTGaaaacctgctgctggatgagaACATGAACATCAAACTGGCAGACTTTGGTTTTGGAAACTTCTATGTACCTGGTGAACTTCTGTCTACCTGGTGTGGAAGTCCTCCGTATGCAGCCCCGGAGGTCTTTGAGGGGAAGGAGTATGAGGGACCACAGCTGGATATCTGGaGTCTGGGAGTGGTTCTGTATGTGCTGGTGTGTGGCTCTTTGCCGTTTGACGGTGCTACACTTCCTATCCTGAAACAACGTGTCACAGAAGGACGCTTCAGAGTGCCCTACTTCATGTCACAGGAGTGTGAAAACCTGATTCGAAGGATGTTGGCAGTGGACCCAGCCAAGCGCATCAGTGTGGCCCAGATAAAGCAGCACCGCTGGATGCAGGCTGACCCTACAGCTGCCTGCCAACCCTCCTTTGACCCTCACTGTCCAGATGGCCTCCTCCAGACGGAGAGCTACAGTGAGCCAGTCCTTAGTCTAATGCAGGCTCTGGGCATCGACAAGCAGCGGACGATAGAATCTTTACAGAATGGCAGCTACAACCACTTCTCTGCCATCTATTGGCTCCTGATGGAGAGATTGGCCGAGCACAAGAACCAGCAGCAAACCAGACAGAGTCAAGAGTGGTCTAAAGAACCTGCTTACACCCTTCCAGGCACAGAATTTTTGGGAGAGGTAGAGCCAAAGCTTTTGCAGTACAGAAAATCCCCCTGCCCCAACAACCTGCTGGACACTAGGATTAGCGAGAAGGCGtcaactaaagactctgtggcAGCGGAACAGGAATTGCCTCTCAATCTCACCACCGGTGGGAGCACAGTACGCAGACATACTGTCTCAGAAGTCTCATCTTCTAAACACTCATGCCATCCACCAAGTATTATTGTAGATCTAGTGGACGATGGCGTCTCAGATGGCAGCCTCAGACTCTGCTCATCCTCCAGTGCCTTCAGCTCCCCTCTTGATTCTCCTGGGGACTTTTCAGGGCCAGGTACAGATCCCTACGTCCACCAGGTCCAGGGACTCCACCCATTTTCACAGAATTCAGCAAGATGTCCCTTCACTCACTCGTCTGTCGAAAGGTTCCAGAACGACCTGCAGGTTCCCAGCTTCCAGGAGGGTAGAAGAGCCTCAGACACGTCTCTGAAACATGGTCTTAGTGCTTTCCACCAGCAGCTGAGGAAGGACGTTCACACGAAAGGCCAGGCAGACTTAAACAAAGTCAAGCGACCTCTGCAGCCTATATGGGTTCCAGTACACAGCCTTCAGGACACTGTTTCTGTAGTGTCACCAGGCcatccaacacacactcactcatggGGACGTCTTCACACCCAGACAGAGATCATCCACGAGCATCAGAGAATGCCCCACCTTCATCTTCCTCAGCACTGCCATCAACAACTGCTTCAGGTGCCCTCTCCTCATTCACATCCCTCTGCAGCTATCCCTCAGCAGAACACCTGGCACTCTACAGTACCTCCATTTGTGGGCTTTGGGAATATCCTTACTCCTTCTATAACACCTCCTGAACACCAGGGGCTCCACCACAACTCACCATACCACCCTCAGCCTCCCCTCGGTCTGCTCTGCCCTCAACAAGGACCACCCCCTCAACCCTCTTCCTATCCAGCAGACCTGGCACCATCTTGGTGCTCATTTGCTAGCTCTTCATCTTCAAACATGGTGGACTCTGCTGCTTTGCTGCTGGAGACCCACCTGCAGATAAGCCCAAGTCCGAGCCTAAGCCCGCAGCCTCAGGTTTGACTTCAGCCTTGAGTTGAGATGGAGGGAGGTTgtggaaatgtggaaatgtgGAAAGCTACTTTAGACGAGGTAATTTGGAGAAACATTGGTTTACACCATTCTTAACTTACCTAAAACGTAAAAGACCCTTTGGCTTTCCACCTTCTTCAGTTTTGCAGTGGAGCTGCAAAACTATTGGAGCAAATTAGGTATTGAAGCTACAAAATTGCAGAATTGACAGATTTCAGCCATCAAGATGGCTCCTACTGCTGGTTTTAGCTATGCAGCTCTACCCTAAGTCAGAAGTTGAGTTGAGGCTGTAAAGAAAATGCaacaaatgtatgtaaatgCAGAGAGTATAACTCTAACACATCTGTCAGTGGTGTACAGGGCATAAAATTGTTACACAACTCATGAAATTGTGAGGTGTTTCGGAGGCATCTGGGGTAGATAAACGAATcagtattaaaaatgtttttcagaAAAATTTATCCTCTGAGCTCTAGaccaaagataaaaaagaatcgtatgctgtttttagcaacaaGTCCAGAAAAGAACATTGAGACCTTAGACCAACATATGCAACACCTACAAAAAGACATCTGTTCCAGGGATGTccccatgcatttttcaacaagacaatgcaaaaccacatgctgcatacATTGCAAAAGCATGgctgtgaagaagaagaagaagaagaagagaaagaggagggtACAAGTATTGGACTGGTCTGCcttttatatgttataaaaatGGATGGCAGGTGGTAAATGCTTTACCATCACAACTTTTTTAGAATGTGTTGCAAGCCTAAAATGCatgatttaatgtttattaacaatttttttttttttaaagtttaccaGACAAAGCATGAAATAGCTTCGGcacatactgtctgcaattaagGTTGTAAATAACATTGTCATGAAACCACATAAGTATACCAACTGAgtgatgatttatgatttatgaacAGAATATACGTTTTATTTCTTTGCCAAATTGTCATTGTACAAAGCCATTCTTAGAGTAGTGTGGCACTAAAATACTGCACTCCACAGACGATCACAAAGGTTCAACCACAACAATGATGGACACTCACTTGCGTTTTGGAGCAAACTTTGAACAGTTCAGATCTCTGCAGAAGAAACATCTGCTTTAAAGGGCCCTGGCTCAGCATCTGCCACAGTACGGATAAGTTGGTCAGAAACATTTGAAAGCCTCTGAAATGTATTCAGTGACGATCATTGAACTCAGTATGTCttccataattattttttatttatttttctacaggTATTGTTGCATATTTAGTTTTCTGCATGGTGATGTTGAATAAATACCAGTAATACTTAtgagtaataatagtaataaagtgGGAGAtgaattttta

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141016 lncRNA upstream 44022 17903955 ~ 17905999 (+) True G104378
TU141009 lncRNA upstream 48915 17896669 ~ 17901106 (+) True G104374
TU141010 lncRNA upstream 52021 17896669 ~ 17898000 (+) False G104374
TU141011 lncRNA upstream 52122 17896669 ~ 17897899 (+) False G104374
TU140993 lncRNA upstream 88161 17861635 ~ 17861860 (+) True G104363
TU141032 lncRNA downstream 8216 17970934 ~ 17992147 (+) True G104392
TU141037 lncRNA downstream 14578 17977296 ~ 17982804 (+) True G104396
TU141105 lncRNA downstream 131325 18094043 ~ 18095156 (+) True G104445
TU141113 lncRNA downstream 207828 18170546 ~ 18170758 (+) True G104448
TU141106 lncRNA downstream 225992 18188710 ~ 18191210 (+) True G104446
XM_007228693.3 mRNA upstream 5296 17934859 ~ 17944725 (+) True hsf2bp
XM_007228697.3 mRNA upstream 53584 17892761 ~ 17896437 (+) True ing1
XM_022674801.1 mRNA upstream 476624 17424943 ~ 17473397 (+) True LOC103032976
XM_022674800.1 mRNA upstream 530883 17406595 ~ 17419138 (+) True LOC111193547
XM_007259033.2 mRNA upstream 624655 17322245 ~ 17325366 (+) True LOC103030825
XM_007228686.3 mRNA downstream 35597 17998315 ~ 18006511 (+) True gemin8
XM_007228687.3 mRNA downstream 35597 17998315 ~ 18006511 (+) False gemin8
XM_007228688.3 mRNA downstream 35597 17998315 ~ 18006511 (+) False gemin8
XM_022674810.1 mRNA downstream 46584 18009302 ~ 18082462 (+) False LOC103032361
XM_022674812.1 mRNA downstream 46584 18009302 ~ 18077579 (+) False LOC103032361
TU140760 other upstream 822711 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1056298 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1442244 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1491812 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3257822 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 956342 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 3026555 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 3056320 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3364474 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4847361 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile