RNA id: XM_007228697.3


Basic Information

Item Value
RNA id XM_007228697.3
length 1814
RNA type mRNA
GC content 0.48
exon number 2
gene id ing1
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17892761 ~ 17896437 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGGGGGTTAAAAcataaacacccacacacatacagaaacacacGAGAAGAACATGTTCTAGGTTGATAGTCATGAGTGTGACTCGCCACAAACAGCCGGGGAGTGCTCGTCCTAcgctggcgcatgcgcagtggcGCATCCAGACTGTTCCCCAAGTGTTTGAAACTACCCGGAGGATCTCTCCACGTTTGGAGGGAGCAAGTAATGCGACACAGGAGGCGTTTACGCTACAAACCTGGACAGCGACATAACTACAGCTTTTGTGCCgatctcttcctcttctctggATCCCTTTTTAAGCCTCTTTAAACGTGGCATGCTTCTTTTTTAAGCTGATTTTTCAGCTCCAAGTTCGGTCCAGTGCTTCATAGATAGGGGAGTCCTCGCATTGGGTGCCACACACTGGCTAATCGAGCTGCTCGGACATAATAACAAatgcttttttctgttttgtcgacGGAAAGACTCGTTTCGTGCGTATGTCAGCTAGTTAAGCTTTAAGTGGACTACCGGGAGCTGAAATGCTGAACACTGCCAGCTGGGACCCGCTGCACGTTGCCAACTATGTGGCTGAATATCTGGACTTGGTTGAATCGCTGCCGTTCGACCTACAAAGAAACGTGTCCCTCATGAGAGAGATCGACTCGAAATATCAAGAAATCCTTAAAGAGCTTGATGAGGCGTACCAGAAGCACAGCCAAGAGGAGGACCCAATCCAGCGGAGGCGCCTTCTGCACTGCATCCAGCGAGCCTTGATCCGAAGCCAGGAGTTGGGCGACGAGAAGATCCAGCTGGCAAGCCAGATGGTAGAATTGGTAGAGAACCGCAGCCGGCAAGTGGATGGTTTCGCCGAGCTCCTGGAAGCCCAAAACGAGCCTCACGATAATGCACCAGCTGCTTCCATGACCACAATCGTGCCTGGAAAGAAGCGAGAGGAGGAAAAGCGCAGAGAAGAGACCATAGGTTTGGTCGATCGTTTGGCAGGCAGCAACAAGCGCTCAAGGCGGCAGAAGGTCAACAGCAATGAGAACCGTGAGAACGCTTCTGCCAGTCACCATGATGAAGTGGTCAGCATCACGGGCAGGGAGAAGAGAGCCAAGACatcgaagaagaagaagaggtcCAAAGCCAAGCAGGAGAGAGAGGCATCGCCAGCTGACCTGCCAATTGACCCCAACGAGCCCACCTACTGTCTCTGCGAGCAGGTGTCTTATGGGGAGATGATAGGTTGCGACAATGACGAATGTCCCATCGAGTGGTTCCATTTCTCATGTGTTGGGCTCAATCATAAGCCCAAAGGGAAGTGGTATTGCCCTAAATGCAGGGGGGACACAGAGAAAACTATGGACAAAGCCTTGGAAAAATCCAAAAAGGAGAGGGGCTATAACAGGTAGCTGCCTTCCTGATGAACTGCACAGcaatgttaatatttatatttatttgttatatataaatctataaatctatttGTTTAACACTAGAAGGATTCACTTCATTGTTTCATATACATGTCCGTTTGTCACCTCAGTACAAAGTTTTATGTGAGTGTTGTCACCTAGCAAAGTAGCACTAAAGGGCTTAAACTCAGCCTTTTGAGTTGAACGATATGAGATGTGCCAGCGACACTCTCAAAGATGTATTTCATTTGAATGTGAATGTCAGATTTGTGAGTATGTGTCCAACTATAGTTAGACAAGCAGTATGATTGACAGAAGTATTGTTTTGTGAAGGCACTTGCAGCATGTGGCTGTCGTTTGTTAAATATTTGAACAGAGCTGTCCTCATGTCcactaataaaaatatgaaattctca

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K19197 ING1; inhibitor of growth protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140993 lncRNA upstream 30901 17861635 ~ 17861860 (+) True G104363
TU140803 lncRNA upstream 190842 17701687 ~ 17701919 (+) True G104204
TU140795 lncRNA upstream 295317 17597148 ~ 17597444 (+) True G104196
TU140788 lncRNA upstream 407575 17482124 ~ 17485186 (+) True G104190
TU140782 lncRNA upstream 474823 17413402 ~ 17417938 (+) False LOC111193547
TU141009 lncRNA downstream 232 17896669 ~ 17901106 (+) True G104374
TU141010 lncRNA downstream 232 17896669 ~ 17898000 (+) False G104374
TU141011 lncRNA downstream 232 17896669 ~ 17897899 (+) False G104374
TU141012 lncRNA downstream 232 17896669 ~ 17965475 (+) False G104374
TU141016 lncRNA downstream 7518 17903955 ~ 17905999 (+) True G104378
XM_022674801.1 mRNA upstream 419364 17424943 ~ 17473397 (+) True LOC103032976
XM_022674800.1 mRNA upstream 473623 17406595 ~ 17419138 (+) True LOC111193547
XM_007259033.2 mRNA upstream 567395 17322245 ~ 17325366 (+) True LOC103030825
XM_022674793.1 mRNA upstream 575558 17213835 ~ 17317203 (+) False map4k4
XM_007228693.3 mRNA downstream 38422 17934859 ~ 17944725 (+) True hsf2bp
XM_007228692.3 mRNA downstream 53584 17950021 ~ 17962718 (+) False LOC103027494
XM_007228691.3 mRNA downstream 55364 17951801 ~ 17962718 (+) True LOC103027494
XM_007228686.3 mRNA downstream 101878 17998315 ~ 18006511 (+) True gemin8
XM_007228687.3 mRNA downstream 101878 17998315 ~ 18006511 (+) False gemin8
TU140760 other upstream 765451 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 999038 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1384984 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1434552 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3200562 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 1022623 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 3092836 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 3122601 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3430755 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4913642 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile