RNA id: XM_022674878.1


Basic Information

Item Value
RNA id XM_022674878.1
length 1303
RNA type mRNA
GC content 0.51
exon number 7
gene id mdh1b
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20944945 ~ 20957033 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatgaaataaacgaAATAAAAGTAGATTTTGGGGGGCGGGGCAAACAAAAAGACCGAGTGGTTGCCTAGCAACTGATGTACATTGAAGACTCATGGCTAAGTTTGTGCTAGCAGGGAGGGCAGACTGCCCACACTATGCTAAGACTGAACTGCTGGCAGACCTGCTGCAGAAGATCCTGCCAGATTTCCACATTCACAAGATCTGTGTTCACCCCAGTGACTGGCAGGACTGGCTCGAAGGAACGTGTTCATCAAATGGGTGGAAGCATGAGAGCAGTCCCATAGTGTGGAGAGAGCTGATTGACCGAGGGGGCAAGGGGATGCTTCTTGGGGGGTTCAGTGATTTTTTGGAACATGTACAGGGCTACTATGGTATCACCTCCGATATGGGATCTGAGCAAATGATGAAGATTGCAGCAGAGAATCTGCGGGTGACTGAGGTGCTCATGGAGGAGGCGGCTCGCCAAAATCAGTCACTTCAAGTGTTTCACATCTGGATCACCGGTGCTCTAAGCCCCACTTGCTACAGTCTCATCCCAAAGCTCTTCAccactgaactgatcagggacATCTCCACCATCAGCCTCCATCTTTTGGACGTGAATAGTAGTGAAGAATCTCTACTGGGTCTTAAAATGGAGACTGAGGACTTGGCCCTGTCTCAGCTCCACGAGGTCACTGTTCACTCTGACATGACCTGGGCCTTccagtcagctgacctcatccTCTTTCTAGATGACTGGCCATCAAATTCTGAGACACCAGTAGAGCAGGGTGACAAGGACCACATGGTGAGCCAGGTGGCAGAGCGGTTTCGATCCTACGGCCGCCTTGTTGAGGCCAATGCGCAGAAGGACGTCAGGGTGATGGTGGCGGGAGACTCGTACGTCAACCTGAAGTGTTCTCTGCTGATTGAGAACGCACCCTCAGTCGACCCCTGTCGCTTTGTGGCAATGACAACACAGCTGGAGTACGAGGCGAGGGCTCAACTGGCAGAGAAGCTGTCAGTGAAGACCACAGACATCACTGACATTATCGTTTGGGGCAATATCAGTGGCAGTTCCCATGTTGACCTACAGAGGGCGAAGGTTTTCAGATATAAGGGGTCTATCTGGGGGCCCACAGGCTTTTCTCAGCAAGTATTGGAGATGATTTATGATAAGAAACTTCGGTGTTCCCGCTGGGCTGGTTTTCTCTGTTCCTGTGAAATTTCACAACGGCgactggtcagtgtgctcagATATCACCATAAATGATGAGCTGAGGAGTAAACTGGGAGTTGCCATCAACGAGCTTTTAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142285 lncRNA upstream 35660 20871791 ~ 20909285 (+) True G105270
TU142293 lncRNA upstream 45636 20898201 ~ 20899309 (+) True G105275
TU142288 lncRNA upstream 84065 20828368 ~ 20860880 (+) True G105271
TU142287 lncRNA upstream 84065 20828437 ~ 20860880 (+) False G105271
TU142218 lncRNA upstream 189413 20755293 ~ 20755532 (+) True G105235
TU142295 lncRNA downstream 32902 20989273 ~ 21055483 (+) False G105276
TU142333 lncRNA downstream 39388 20995759 ~ 20999373 (+) True G105300
TU142336 lncRNA downstream 43768 21000139 ~ 21004638 (+) True G105303
TU142341 lncRNA downstream 47374 21003745 ~ 21005854 (+) True G105305
TU142347 lncRNA downstream 56812 21013183 ~ 21015484 (+) True G105311
XM_022674873.1 mRNA upstream 36170 20860945 ~ 20908775 (+) True LOC103031253
XM_007237402.3 mRNA upstream 117670 20804054 ~ 20827275 (+) True gtf3c3
XM_022674871.1 mRNA upstream 117670 20804054 ~ 20827275 (+) False gtf3c3
XM_022674872.1 mRNA upstream 117670 20804054 ~ 20827275 (+) False gtf3c3
XM_007237403.3 mRNA upstream 144414 20783070 ~ 20800531 (+) True LOC103029333
XM_022674884.1 mRNA downstream 461065 21417436 ~ 21550327 (+) True nrp2
XM_022674883.1 mRNA downstream 461066 21417437 ~ 21561654 (+) False nrp2
XM_022674882.1 mRNA downstream 461067 21417438 ~ 21561654 (+) False nrp2
XM_015602212.2 mRNA downstream 655201 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA downstream 655201 21611572 ~ 21616436 (+) False LOC103037976
TU141369 other upstream 2021742 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 3817635 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 4051222 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 4437168 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 4486736 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 32902 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 62667 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 370821 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 1853708 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 2959264 23915635 ~ 23923771 (+) True G106017

Expression Profile