RNA id: XM_007234822.2


Basic Information

Item Value
RNA id XM_007234822.2
length 2775
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC103043862
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 27890718 ~ 27905645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgtaTGAAACTCAGAGATTCCTGGAAAATGAAAGTAGCGGCGCTGAGGAAGAGTTTCGATTTCTGATGAAGAGAACCTGAGCTCAGCTTCCTCCAAACTCCAGACCACAGACTACAGACTACAGCAGCTGCGCTGAGGCACCTGACGTCCGCGAGGTTGCTACGGTTGCTGAGGTATCTGAGATGGGTTCCACGCTGAATGAGCAGTATGAGGAGAAGGTCAGGCCGTGTATTGATCTGATAGACTCTCTCAGATCTCAGGGGGTGGAGAAGGACCTGGCGCTGCCCGCCATCGCCGTTATAGGAGACCAGAGCTCCGGCAAGAGCTCCGTGCTGGAGGCGCTCAGCGGGGTCGCCCTACCCAGAGGCAGCGGTATCGTGACGCGATGTCCTCTGGAGCTGAAGATGAAGAGGTGCCGGGAGGAGGACAGCTGGCACGGGAAGATCAGCTACGACGGCTACGAAGAGGAGTTAGATGATCCAGCCGAGGTGGAGAGCAAGATCAGAGAAGCCCAGGATAAAATAGCCGGGGTTGGAGTGGGGATCAGTGATGACCTCATCAGTCTGGAGATAACTTCTTCCAACGTTCCTGATCTCACACTTATCGACCTGCCGGGGATCGCACGAGTCGCCGTCAAGGGCCAACCAGAAGACATCGGAGACCAGATTAAGAGGCTGATCCGGAAGTTCATCACCAAGCAGGAAACGATTAACCTGGTGGTGGTGCCGTGCAACGTGGACATCGCCACCACTGAAGCTCTGAAGATGGCTCAGGTGGAGGATCCGAATGGAGAGAGGACTCTAGGCATCCTGACGAAGCCGGACCTGGTGGATAAGGGGACGGAGGAGACGGTGGTGGAGATCGTTAATAACGAGATCATTAATCTGACTAAAGGCTACATGATCGTTCGCTGCAGAGGACAGAAGGAGATAATAGACCGCGTGTCTCTGACTGAAGCCACGGAGAAGGAGAAGGCCTTCTTCAGGGATCATCCTCACTTCAGCGTGCTGTACGACGACGGCAAAGCCACCGTCCCCAAACTCGCTGAGAAACTGACGCTGGAGCTGGTCCATCACATCGAGAAATCGCTGCCGAGGCTTGAGGAGCAGATCGAGGCGAAGCTGGCCGAGACCCAGGACGAGCTGGAAAAGTACGGCAATGGTCCGCCCATGGAGCCCAGCGAGCGCATCTACTATCTGATTGATaAAGTGACGGCGTTCACTCAGGACGCTCTGAACCTGACCATGGGGGAGGAGCTTAGGACTGCCCCCCACCTCAACATCTTCTCCAACCTAAGGATAAAGTTCGAGAGCTGGAAGCAGCACCTGGACCAATCAGGAGAGACCTTTAACAGGCGAATTGAGAAGGAAGTGCAGGAGTATGAGGTTAAGTACCGGGGCCGGGAACTTCCAGGATTCATTAACTACAAGACCTTCGAGGTGATGGTGAAGGACCAGATCAAGAAGCTGGAGGAACCTGCTGTCAGGAAGCTGAAGGAGATCTCAGATCTTATTAGAAAGGGCTTCATCCAGTTGGCTCAGAACAGCTTTGTGGGCTTCCCCAACCTTCTCAGAACAGCAAAGACCAGGATCGACAGTATAAAACAGGAGAAGGAGGCGGAGGCCGAGTCGATGTTGAGGACCCAGTTTAAGATGGAGCTGATCATCTACACTCAGGACAGCACCTACAGCAACACCCTGATTTCTCTGAAgcatgaagaggaggagggtgAAGAACAGAAAGGAGGAAATTCCTACGTAGTCTCTGGTTTTGGTTTTTCCAGTCTGCTCTCCAACACGAACAACCACGCCACCCTGCAGGAACTGATGCGGCACCTCAAGTCCTACTACGGCATTGCTAGTAAGCGCCTGGCGGACCAGGTCCCGCTGATGATCCGGTACCTGCTGCTGCAGGAGGCGGCGCTGCAGCTGCAGAGGGACATGCTGCAGCTGATACAGGACAAGGACTGCACCGAGACCCTGCTCAAAGAGGACCACGACATCGGCAACAAGCGCGCCAACCTGCTGAGCCGCCAGAAACGACTGATGAAAGCCCACAGCTACCTCGTCAAGTTTTAGCGCGTCCAGACTGAAATGACTGGATGAAGATATTCATTAAATTACTAATTtcattttagtctaaataactatatatacaACCGGCAGGTTTTCTTTATGTATCCTTATCTTACTTTTGTTCAGTTGTTCCATTATTTACAGAGGACTAGGTTATAAGGTGTGATCATCAGTGTAGATGTTTTGGGGTGGGTATCTGGTAGCTAAACCAAAGATGAGGTTTTAGATTCAGTTTCTAAagtatatagataaaaaaaatcaagaaattttATCAGTGTATTGAAATGTGCCACAGTTCCAACAGATTTAATGTACTGGGTAAGCATGGACCATTTACACCAATGGATCAATTATTAGGAAGGTTTCAATATGGGTTTAAGATATATGCTACTGTAGCTAGCTGATAGCTAGCAAtcagtctcagaaaattttaatatcataTAAGACTAATTAGTACTTttgcaagtcctgctggaaaatgaaatctgcacctcCATAAAAGCCATTTTTGTGgagatggaagcatgaagtgatgTAAGATTTTcctggaaaacactgcactgactttggacttgataatacaACACAGTAGTGTCCAAGCTGCTTAAGGTCTAGTTTGAAGtctctacaatcagtgatggtttggttggagagtcatgtctgtcatctgctggtgttgatccactgtgttttattatt

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144055 lncRNA upstream 63870 27826587 ~ 27826848 (+) True G106636
TU143955 lncRNA upstream 256508 27630943 ~ 27634210 (+) True G106572
TU143943 lncRNA upstream 266017 27583377 ~ 27624701 (+) True G106562
TU143945 lncRNA upstream 280104 27609381 ~ 27610614 (+) True G106564
TU143930 lncRNA upstream 319072 27571336 ~ 27571646 (+) True G106557
TU144066 lncRNA downstream 140 27905785 ~ 27906285 (+) True G106644
TU144068 lncRNA downstream 1311 27906956 ~ 27907211 (+) True G106646
TU144070 lncRNA downstream 6661 27912306 ~ 27914261 (+) True G106648
TU144061 lncRNA downstream 9902 27915547 ~ 27918196 (+) True G106642
TU144074 lncRNA downstream 20615 27926260 ~ 27936905 (+) True G106650
XM_022674368.1 mRNA upstream 82634 27802084 ~ 27808084 (+) True LOC103047315
XM_022674943.1 mRNA upstream 122451 27759212 ~ 27768267 (+) True arglu1
XM_022674367.1 mRNA upstream 132621 27745088 ~ 27758097 (+) True LOC111193461
XM_022674942.1 mRNA upstream 151620 27729513 ~ 27739098 (+) True LOC103046391
XM_022674939.1 mRNA upstream 286487 27588049 ~ 27604231 (+) True atic
XM_022674370.1 mRNA downstream 88354 27993999 ~ 27999852 (+) True LOC111193463
XM_022674372.1 mRNA downstream 783910 28689555 ~ 28692305 (+) True LOC111193464
XM_022674373.1 mRNA downstream 787199 28692844 ~ 28697096 (+) True LOC111193465
XM_022674374.1 mRNA downstream 796367 28702012 ~ 28702921 (+) True LOC111193466
XM_022674375.1 mRNA downstream 797422 28703067 ~ 28723826 (+) True LOC103027743
TU143503 other upstream 2521279 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 2521279 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 3477620 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 3901126 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 3966947 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 108871 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 160707 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 810957 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 1874681 29780326 ~ 29780927 (+) True G107117

Expression Profile