RNA id: XM_007237402.3


Basic Information

Item Value
RNA id XM_007237402.3
length 3059
RNA type mRNA
GC content 0.52
exon number 18
gene id gtf3c3
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20804054 ~ 20827275 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATTTGACGGAGTATCTACGGAGTCACAATGCTGCGAAGCATGTCTGTTTAAAGCAGcgataataataacataaatctatctgtttatttagatattaatttaataatgtcgGAGTCCAGCCCTGAACTGAACGATTACCTGGAGGGGAAGATCTCCTTCGAGGAGTTTGAGAGacggagagaagaaagaaaagcgAAGATAAAGGAGGAAGCAGATGATGGCTCGGATGAGAATGAGGCTGTTGAGCAGGATGATGCCATTCCGAGCACTTCCAAACAGATCCCCAGAGTAGCTTGGAAACATCAGACAGGCAGCACAGAGGAGGGAGTAAGCCTGTCTGTTCAAAAGGCCTTTGCCTCCATGCTTGGGGAGGGTctggaggagatggaggatgaAGGCATGGACGAGGGTGAGGACGACGGGGAGTGGAGAGATATTGGTGAGGACGATGGTGAGGACTATGATGGTGGCGACGGCGGCAGTGAAGTCACGCCGGGGGATGTGTTTGCCCTGGAGATGGAGCTCAACCGGGAGAACAAGAAGATGATGAGGgaaAGACGTCCCCGTAGTAAGCTTCCTCGCGCCCTCAGAGGGTTAATGGGAGAGGCCAACATCCGCTACGCCCGAGGAGACAAAGAAGATGCCATCCTGATGTGCATGGAGATCATTCGCCAGGCTCCCCTGGCGTACGAGCCCTTCTCCACCCTGGCGATGATCTACGAGGATCAGGGTGACATGGAGAAGGCACTGCAGTTTGGGCTGATCGCAGCACATCTGAACCCCAGCGACTGCGAGGAGTGGGTCAAGCTGGCCGACATGTCCCTGGAGCAGGACAACATCAAGCAGGCCATCATCTGCTACACTAAAGCAATTAAATATAACCAAAGTAATGTGCGCTATCTGTGGGAGCGCTCCAGTCTCTACGAGCAGGTGGGAGAACACAAGCAGGCCATGGACGGCTACCGCAGAATCCTCAGCCTGCTGCCCCCTACTGATGGAGAGCACTTCATGCAGCTGTCACGTGACATGGCCAAGAGTTACTATGAGAGCAACGAGTTGGCTTCGGCTATTGGTGTGATGGAGGAGGCTCTGGAACGACACCCCGAGCTGGTTAGCCACGAGTGTGTTAACATGGCAGCTGAACTCTACATCGCCAACCACCAGTACGTCAAAGCCTTAGAGGACTTGATCAGGTTTTGTAACATCACACTGGTGAGAGAACCAACCAAGCAGGAGCCCAAGGAACAGACGGCCATGGGAACTGAGGGTGAGGAAGAacaaaaggaggagaagaaagaggaCACAGAAGAAACAAGAGGAGAGGTTTTGGAGGTTGTGGTTCCTGAAGATGTTCCAGTAGACATCAGGGTGAAGCTTATGGTCTGCCTGATCCACCAGCATGTCCTCAAGCCTCTAGATCCCATGCTGACATCTCTGATGGAGCAAAGCCCGGAGGAGATGGGTGACCTGTACCTGGACGTAGCGGAGGCCTTCATGGATGAGGGCGAATACAACTCGGCCCTGCCCCTGCTATCTGCCCTGGTCTGCTCGGAGAGATACAACCTGGCTGTGGTGTGGCTTCGTCACGCAGAGTGTCTGAAGGCCCTGGGGCATTTAGAGGTGGCTGTGAACAGCTACAGTAAGGTGGTGGAGATGGCCCCGCTGCATCTGGAGGCACGTCTGGCTCTGTCCaccctgcagcagcagctgggCAGACCCAACTGCGCCCTGCAGGCGTTGGAGCCCATGTACGATGCCGACACTCTGGCCCAGGACCCCTCAGCTGCgcagcaggagctgaagttgctgctgcacCGCTCCACTCTGCTTCGATGTCAGGGCAGAACAGTGGACTACATAGACGCTCTGCTCACCATGCTCTCCATGCTGCTTAAGGTGGCGATGGTGAGAGCTCAGGTGTGTCTGATAGCCAGCACCTCGTCCGGCACCAGACACCTGCGTCTGATCAAAGTGTCCCGCAACAAGCTGTCTGAAATTGAGGACCAGGAGGCAGCTTACTTAGACGTTACAGGTAAGACCAGCGTACTGTCTCGGGAGGACTGGTGGAGGCTGCTGCTGGAGTGTCTGGAAGCACTGTGTGAAGAGAAGCGCTTCACAGAGGCCGAGCTTCTGGTCGACTCCTCGCTGGAATTCTACTCCTTCTATGACGACCGGGTCAAGCGAAAGGAGCTGGAGTATCTGGGCTTGTCTGCCGCGTTCCTGGATCGCAACTTCCGCAAAGCATATGACTACATAAGGTTGATGCTGATGAACAGCGTGGAGCGGGATCAATTGTGGAACGTCTTCAATCAGGTGACACTGCAGTCGCAGGATGTCAGGCACCACCGCTTCTGCTTGCGTCTCATGCTGAAAAATCCTGAGAATCATGCGCTCTGCCTCCTCAACGGACACACCTCACTGGTGTCTGGAACGTTCAAGCACGCCCTTGGTCAGTATATGCAGGCCTTCAAGAATCAGCCATGTAACCCTCTGCACAGCCTGTGCGTGGGCctcaccttcttccacatggcCTCACAGAAGTTCGTTGTAAAAAGACATCCACTAGTACTGCAGGGATTCTCATTCTTGTGGCGCTATGTGGACCTCCGAGGGCACTGTCAAGAGAGCTTGTACAATGTGGGTCGGGCTCTGCACCAGCTGGGCCTAACTCACCTGGCCATTCACTACTACCAGAAAGCCCTCAGCTTCCCTCCACTCAAACTTGAGGGAACTGATGAAGATCAAGTGGACTTGCGCAGAGAGATCGCCTACAACCTTTCACTCATATGCCATGCTAGCGGCAACAAGGAGATGGCTCGCTACTATATTTACACATACTGCACtgtctgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcttttgaaAGGGGTGTTCACGAGAAAATGTGTTTCCATAACTGATTAGACACAAAGCAATgtaatatatctgtaatatacatatgtataaaaTGTCATTTCTACTGATGTTTTTCAATAAAGCAATAAAgctatttattattgttaa

Function

GO: NA

KEGG:

id description
K15201 GTP3C3, TFC4; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142218 lncRNA upstream 48522 20755293 ~ 20755532 (+) True G105235
TU141983 lncRNA upstream 151793 20649096 ~ 20652261 (+) True G105079
TU141972 lncRNA upstream 183613 20618790 ~ 20620441 (+) True G105074
TU141924 lncRNA upstream 379479 20348319 ~ 20424575 (+) True G105041
TU142288 lncRNA downstream 1093 20828368 ~ 20860880 (+) True G105271
TU142287 lncRNA downstream 1162 20828437 ~ 20860880 (+) False G105271
TU142285 lncRNA downstream 44516 20871791 ~ 20909285 (+) True G105270
TU142293 lncRNA downstream 70926 20898201 ~ 20899309 (+) True G105275
TU142295 lncRNA downstream 161998 20989273 ~ 21055483 (+) False G105276
XM_007237403.3 mRNA upstream 3523 20783070 ~ 20800531 (+) True LOC103029333
XM_007237404.3 mRNA upstream 29725 20765742 ~ 20774329 (+) True LOC103029654
XM_022674352.1 mRNA upstream 210724 20566129 ~ 20593330 (+) True tmem255b
XM_022674863.1 mRNA upstream 239469 20532402 ~ 20564585 (+) False cenpe
XM_022674873.1 mRNA downstream 33670 20860945 ~ 20908775 (+) True LOC103031253
XM_022674878.1 mRNA downstream 117670 20944945 ~ 20956371 (+) False mdh1b
XM_022674877.1 mRNA downstream 117671 20944946 ~ 20957033 (+) False mdh1b
XM_007233712.3 mRNA downstream 117762 20945037 ~ 20956958 (+) True mdh1b
XM_022674884.1 mRNA downstream 590161 21417436 ~ 21550327 (+) True nrp2
TU141369 other upstream 1880851 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 3676744 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 3910331 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 4296277 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 4345845 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 161998 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 191763 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 499917 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 1982804 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 3088360 23915635 ~ 23923771 (+) True G106017

Expression Profile