RNA id: XM_007237758.3


Basic Information

Item Value
RNA id XM_007237758.3
length 4359
RNA type mRNA
GC content 0.51
exon number 8
gene id adamts1
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 31312740 ~ 31319149 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGGAAGGGGGTGGTCCCGACAGGGGGACATAAATAGCGAGCCGGGAGCTGGAGGttaagagagaaggagaagcgGAGTAAAGAAGGGCGGTGGAGGAGGCGCTGAAGTGCGGATGGGAATAAAGCTGCGGGAACTTTAGCGCTGAGAGTTTAGTCTGAATCCTCCGCGCAAAAACTGAAGAagagagatttttatttttgcacaagTTTGATTTCTTTTCTGTGATCTGTATCGGTACTCGAGCAAACACTGGCACTGGATTTCTGCTagatttctgtttttatcaGGTTctgatttttgccatttttaacgCGAACCGCACATTTGATCTGGACTTTTCgtaatagaaatattttttaaagttttgctcTTTTTCTCAGGACTTTTTTTGCGTTCTTTTGCAACTTTTTACAACTTTCTAACTTTCTACAAACGTTCCTGTTCGCTTCAGTTCAACTTTCTGAAGGAATATGTTGAGTTTACTGCTTGTGCTCCTCGCTGCCGCTTGCACTGTGGTGTCAGCGCAGGGCGCGTGGGAGGAGACCACCGTGGTCCCGGTACGTCTGGATGCCACTGACACCGATGCCGACTCCCAGAAGCTCGTGTACCAGCTGGACGTGTTCGGCAAGCGGACGGTGCTGGAGCTCGAGCCCGACCGGACGTTCCTGGCGCCCGGCTTCGTCTTCCACGAGATCGGCAAAACCGAGGGGAACCGGGAACCGGACAGTGCCGGTCAGGAGCGCTGCTTCTACTCGGGGACGGTGCGCGGAGAACCGGAGTCCGCCGCAGCCATCAACGCGTGCGACGGGCTGAGAGGCGGCTTCTACACCGGCGGCGAAGAGTTCTTCATCCAGCCCGTCGGCGCCAACGCCTCCACCGCGGACCTGCACGTTATCCGCCGGAGGAGCCGAGCGGGGGCCGCCGGCTCCAAGTGCGGAGTCaacgaggaggaggagaaggttCCCGAGCACAAGGAGCCCGGATCAGATCAGCGGAGCAGCCCGACGGACTCGCAAGcaCACCATCGATCCCGTCGCTTTGTGTCCACCCCACGATACCTGGAGATCATGATAGTGGCAGACAAGTCTATGGCCGACTTCCACAAAGAGGGTCTGAAGCCTTACCTGCTGACTATAATGGCAGTTGCCTCTCGCCTTTACCGCCACCCAACCATCCACAACTCCATCTCACTGGCCGTGGTGAAGCTGCTGGTGGTGCACAATGAAAAACATGGACCAGATGTTTCTCAAAATGCTGCTCTCACCCTGAGGAACTTCTGCCAGTGGCAAAGGCAGCACAACCCTGCAAGCGATCGCCACCCGGAGCACTatgatacagcagtgctgttcaCAAGACAGGATCTTTGTGGAGCTCACTCTTGCGACACACTGGGCATGGCCGATGTTGGCACAGTATGTGATCCTGACCGGAGCTGCTCTATAATCGAGGATGATGGACTGCAAGCAGCCTTCACTGTGGCACATGAGCTTGGTCATGTGTTCAACATGCCCCATGACGATGCCAAACAGTGTGCTAGTGTCAATGGTGATCATTGGAGTTCTCACATGATGGCTTCTACTCTTTCCAACCTGAATCAGTTGCAACCCTGGTCTCCTTGTAGTGCCCTGATGGTCACCTCCTTCCTGGACAATGGCCATGGCCAGTGTCTGCTGGACAAGCCCCAGAAACCTCAACAATTACCCCAGGCTCTGCCAGGTTCTGAGTATGATGCTGACAAACAGTGTCGTCTCACATTTGGAGAAGAGTCACAGCATTGTCCCGACCTGAGCACCACCTGTGCAGCTTTGTGGTGCACTGTTACTACTTCCAGTGGTCTGCTGGTGTGCCAAACCAAGAACTTTCCATGGGCGGATGGAACACCATGTGGGCATGACAGCTACTGCATGGCAGGCCAGTGTCTGAGCAAGAGTGAAGCCGCTGCCTATCAGactCCAGTCAATGGTGGATGGGGATCTTGGGGAGATTGGGGAGATTGCTCACGCacctgtggtggtggtgtacaGTACTCTTTCAGAGACTGTGACAACCCCTTACCCAAGAATGGAGGCAAATACTGCGAAGGGAAAAGAATTCAGTACAGATCCTGCAATACCGAAGCCTGTCCTGACACCAATGGTTTAACCTTCCGAGAAGAGCAGTGTTTGGCTCACAATGACCTCTCCTCCCAAGTGTCATTTGGCTCTGGTGAAGGTGTTGAGTGGGTGCCGAAGTACGCTGGGGTATCACCCAAGGACCGTTGCAAGCTGGTTTGCAGGGCAAAGGGAACAGGCTACTTCTTCATTCTCAAGCCAAAGGTGGCTGATGGAACACCCTGCACCCCAGACTCCACCTCAGTCTGTGTCCAAGGCCAGTGTGTCAAGGCCGGATGTGATCGTGAGATTGGCTCAAACAAGCGGTTTGATAAATGTGGCGTTTGTGGAGGGGACGGATCCACTTGCAAAAAAGTGTCTGGATCACTGGAACGTGCAAGGCCTGGCTATCAGGATGTGGTGATAATCCCTGCCGGTGCCACCAACCTTGATGTCAAGCAGCGGTCCCCCGGTGGCCGCCGCCAAGACAACAGCTACCTGGCAGTCCGTCGGCAAGACGGCACCTACCTACTAAATGGTGAATACAAACTTACAACACTGGAGACTGACATCTCCCTGCGAGGGGCACTTCTGCGCTACAGTGGTTCCTCAGCCTCTCTAGAACGTATTCGCAGCTTTGCTCCTCTTCCAGAGCCACTAACAATCCAGGTACTGTCAGTAGGGGACTCTCCTCGTCCTCGTGTGAAGTACAGCTACTTTGCACCACGTCCTGCTTCTAGTCCATCTGGCTCAAAACAGCGTTCCATCAATGCCATCGGAGAAGCTGGAGGTGCAGAGTGGACCCTGCGCGAATGGGGACCCTGCTCACAGACCTGCGGCGAAGGTACACAGATGAGGGACGTGCTCTGTCTTGATGCTCAGGGCAGACCGTCGAAAGACTGCCCTGAAGAGCTGCGACCTCCTTCCTCTCGGCCTTGTGTCATGCAGGCTTGCCCGTCCTGGCAGGTGGGAGAGTGGTCAGCCTGCTCCAAGACCTGTGGTCGAGGCTTCCGGAAACGTTCATTGCGCTGCGTGGGGCACAATGGTCACACCTTGTCCCACGACAGCTGCAACGCAAAGGATCGGCCTCGACCCCTACTGGACTTGTGCATTAATAGTACCTGTTAAGACTGGTTAGGACTAAAAGCAACCTCGAATGACTGTAATCCTGCTAGTTGCATCTGAAGCAGAGCAATGCAGGTTCTTGGGATCCAAAGGGCCCCTTATGACGGTGACTGCAAATCCCACCATCTAGTGCTACAACTCCCACTCCTCCAACACTGGGAACAGGGCACAAAGCTggcacactgtgtacctgtaaaaaaaaaaagctaagatGGAGGAAGAGTTTATGGACGCTACAAGGACACGTGTGCTGCTTACGGTGCTGTTGTCGTGCCATGAGTGTGTTTTAAATTGAATGATTGTATGAAAAGCTCTAGTTTATGTATTTGTACTGTCTGTCTGAGCTGGACTAGACAGACAGGGTTGCTTCCCTGCAGGAACGATTATGAGAGGATTCACAAAGGTGCATTGGCTACAGTAGAAATCAGTAGTTGGGACTTAGCAAGggaaacctttataaagggccAACAGTTGGTACTCCTGCTACTAATTCCGACATTTTTGTTACTAGCATACCGAGCACATATTTTACAGATGCCTTCTTGCCAAAACCCACTCcgcacctcacctcacctcacgtAGACACAAAAGCTGCTATTCCTTTTAGCTACAGCTAGTACACACAGTTAGCGCACAGGTTGATAATGCTGTCGTTTTCAAAGCCATACCCTATCATGAGGGAACAAAAAAATGGAGAGGGGAGAGTCCAAAGATCACGGTTTCTGTATCTGAGGAGTGAGTGCTGGTGTGTTCTGAAGAGTGAGCGAAGAGTGCGCGAGAGTTTGAAAGAGTGACTGTGTGAATGTCTGTGTGAGGGCATATTTTGGAGATGGGTGAGGGACTTCTCTCCTGCTACTACTTCATAAGTAAGTCTCTCGTGCCTTCCAAGAAGGTGTCATCTTAAAGACGTAtttctttgttgttgttgttgttgttttttgtacagAATATCcaacacttatttatttttgtacagcCTGTTTAATATAATCTTGTGgcttttctattattattgtatttctatttgttattattattattgaaataaCAGAAGgatgtatattatattagagtatttatacagttattataaatGGTCTTAGGTTTATGAATAAAGTATCACATTGACCTGTGAACTGTCA

Function

GO: NA

KEGG:

id description
K08617 ADAMTS1; a disintegrin and metalloproteinase with thrombospondin motifs 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145181 lncRNA upstream 23329 31288735 ~ 31289411 (+) True G107482
TU145153 lncRNA upstream 110516 31201997 ~ 31202224 (+) True G107463
TU145144 lncRNA upstream 134397 31178086 ~ 31178343 (+) True G107454
TU145140 lncRNA upstream 149233 31162526 ~ 31163507 (+) True G107450
TU145138 lncRNA upstream 159041 31153480 ~ 31153699 (+) True G107448
XM_007237759.3 mRNA upstream 12319 31261280 ~ 31300421 (+) True adamts5
XM_022674977.1 mRNA upstream 601488 30672152 ~ 30711252 (+) True gart
XM_022674976.1 mRNA upstream 643996 30661999 ~ 30668744 (+) True LOC111193577
XM_022674380.1 mRNA upstream 765379 30540261 ~ 30547361 (+) True LOC111193471
XM_022674973.1 mRNA upstream 861139 29844100 ~ 30451601 (+) True ncam2
XM_007237757.3 mRNA downstream 6545 31325694 ~ 31341351 (+) True cyyr1
XM_022674980.1 mRNA downstream 28152 31347301 ~ 31402273 (+) False app
XM_022674979.1 mRNA downstream 28153 31347302 ~ 31402273 (+) True app
TU144751 other upstream 1531813 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 2592460 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 3245757 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 3290693 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5943301 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile