RNA id: XM_007237759.3


Basic Information

Item Value
RNA id XM_007237759.3
length 3599
RNA type mRNA
GC content 0.58
exon number 8
gene id adamts5
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 31261280 ~ 31300421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagagagagagcgcgcgcgcACCGTCGTCGTCATCATGCTGCCCGGGATTATTgtggtgttgttgttgttttttctcctCGCTCCACGTGTGTCGCGCGCTCCCTCCCGCCGCTGCCCCTCCTGCCGCCGCTGCCCCCAGCTCGCGCCCCTCCGCACCTGCCGCCCCTCGCGCCTCTGCTACCGGGCTCGTGCGCTCCGTGGACCGGCTGTATCGCGGGGGCGGGCGCGCGGGCTTCCTCCTGGACATGGACGGCCGTCGCTTCCAGCTCGACCTGGAGAGGGACGAGAGCGCGCCGCCGGCACTGGAGCGCGCGCTCGGGCTGGGGCGCGCGCGTGTGAGGTCCCGGTGCGCCTACCGTGGCACGGTGGACTCCAACCCCGAGTCGCTGGCGGCGTTCGAGCTGTGCGGCGGGCGCCTGCGCGGATTCTTCGCGGTGGACGGCGCGCGCTACGTGGTACGTGCGCTCCCGCGCTCTTCCGTCTACTTCTACAGGCGCGAGGGATTCAGCTTCGAGGCGGCGCGCGGGGCGGACGCGCACGACGGCTGCGGAACGCGCGACCCCGACGTCATCAACGCCAACGACGCGGAGCAGCAGTCGGTGGTGCACGTGAGAACGGAAGGGAAGCGGCTGAGGAGACGCGGCAGGTCGGTGTCGCGCGCCCGGCACGTGGAGCTTCTGCTGGTGGCGGACGAGAGCATGGCGAGGAAGTACGGCACCGAGCTGCGGCACTACCTGCTCACGCTGGCGTCCATCGCCTCGCGCCTCTACGGCCACGCGAGCATCGAGAACCCCGTGCGCCTGTCGGTAGTAAAGCTGACGGTGCTCTCGGAGAAGGAGAAGGGCCTGGAGGTTTCGCGCAACGCCGCCGCCACGCTCAAGAGCTTCTGCAAGTGGCAGAACCAGCAGAACCCGCTGGATGACGACCACGAGCATCACCACGACGCGGCCATCCTCTTCACCAGGCAGgacCTGTGTGGGCATCACTCGTGTGATACGCTGGGCATGGCTGACGTGGGCACCGTGTGTTCTCCAGAGAGGAGCTGCGCTGTCATCGAGGACGACGGGCTGCACGCCGCCTTCACCGTCGCCCATGAGATCGGGCACCTTCTCGGCCTGTCCCATGATGACTCTAAGTTCTGTGAGGAGAGGTTCGGCTCCACAGAGGACAAGAGGCTAATGTCGTCCATCCTGACCTCCATCGATGCCTCTAAGCCCTGGAGCCGCTGCACCTCGGCCACCATCACCGACTTCTTTGATGATGGAAACGCGGAGTGTCTGCTGGATACGCCCCGCCAGCCTATCCTGGGTCCTGAGGAGCTCCCAGGCCAGAGCTACGATGCGGTGCGGCAGTGCCGGCTGGCGTTCGGGCCCGAGTACACGGTGTGCCCGGGCATGGACGTGTGTGCACGGCTGTGGTGCGCGGTGATCAGGAAGGGCCAGATGGTCTGTCTGACCAAGAAGCTGCCGGCCGTGGAGGGAACGCCATGCGGCAAGGGCAGGATATGCCTGCAGGGGAAATGTGTGGACAAGACACGCAAAAGACACTATTCGGCCTCTAACCACGGTAGCTGGAGCTCCTGGGGGCCGTGGGGGGCGTGCTCTCGGACATGTGGAGGCGGAGTACAGTTTGCCCATCGTCTGTGCAACAACCCTCCACCTCGCAACAACGGACGCTACTGTACAGGAAAGAGAGCCATCTACAGGTCCTGCAGCGTCACGCCATGTCCTGCACAAAGCAAGAGTTTTAGGCAGGAGCAGTGTGAGGTGAAGAACGGACCTCAGACTGACCCTAAGGGAGTGAAGACGTTTGTGGAGTGGGTGCCCAAGTATGCTGGTATTCTGCCAAAGGACATGTGCAAACTGACCTGCAGGGCCAAGGGCACCGGCTACTATGTAGTGTTCTCTCAGAGGgtgataGATGGAACTGACTGTAGGCCCCACAGCAGCTCAGTGTGTGTGAAAGGGAAGTGTGTGCGCACCGGCTGTGATGGAATCATCGGCTCCAAGCTGCAATATGACAAATGCGGCATCTGTGGAGGCGACAGCACCAGCTGTATAAAAGTGGCGGGTAACTTCACCAAGAGGAGTAAGGGCTACACTGATGTGGTGAAGATCCCAGAGGGCTCGACTCACATCAAAATCCGGCAGTACAAACCCAAAGGCCAGACTCGCTTCACAGCTTACCTAGCCCTCCGCCGACCTGGAGGAGAGTACCTTCTCAACGGCAAGTTCATGATCTCCACCTCCGAGACCGTCATTCCCCTCAACGGTACCATGTTTAACTACAGCGGCTGGAGCCAGCATGACGAGGCTCTCCACAGCATGGGGCCCGGAGCTCTCCGGGAGAGTCTGGTGGTGCAGATACTAGCGACCGACGGCAAGAAGCCGCTCGACATCCGCTACAGCTTCTTCATGCCACGCAAGACGCCGCTGCCTCCTCGGACCACCTGGATGATTTCTGCCACGGCTGCGGCTTTGTCTTCGGGCGAGACGATCACCATGACCACGGAGGCGCCCTCCACGACCAAGCCTCCAACAACGACCCCACCTGGGCCTCGGTGGGTGACGGGCTCATGGATGACTTGCTCCAGGACTTGTGACACTGGCTGGCAGAGTCGTACAGTTCAGTGCAAGGACCCGCTGGGTAAGTTAAGTAAGGCGTGTCCTCTGGGAGACAGACCTTCGGCCTTCAAACACTGCCTGATTAAAAAGTGCTGAAGAGCCTATACGGGAGAGGACTTGCTCTTACGGGAAAGCTTGCTCTGCTCTTATGGAtgtgcttcttcttcttccgtGTCCGCAGTGGAAAGTCTCGAGAGGAGACGGACAAACAGGAGCATAGACACGTACAATCTTACGGAGCAGAACCGCGCAAGGTTCTTTTACACTTGCAGTCGTTCGTAATTGTTCTGATGCTGTTTCATGCCCTAAAATGTcactgtggaaattgtggaacGTGACTGAATCGGCTCGCATTCCGACGTTGACCATGAATTAGACGAGAAGCGCCAGCCCTGGCCTCCAGTACAACATAGGGACTTCATCTGCAGCCTGGATTCACTGACAACTCAATAACAATATGTAGCCACTCTTCTCCTGACCATCAGATATCTTATTCAGCCACTCCTCCTTTGGGGGGTCAGTGTATTTTAGTGTGTATCCATCACGAAATCAAGTTTGAACTGGAACCCAGCAAAGAAACCCAACAGAAATGTAATTCTGGGTTAAAGTAGAGGACTGCAAGTACATAGAGTCTGAGCTATTCCTGCACAATGGGACTGTAGTATGACTACTCTGGTTTTGGAGGTTGACCATGCATTACAATGATGCAGATTATCTACAAATGGAAGCTTCCATGCCCATTGGAGTGTATCAATACCTGATACTGTTGTCCTGTGTTTATGTCCAGCACATTCTCAAAATGGCTTGAGGAACTTTCCTTCATCACTGAAAGACCACAATCTGTTGAcgttagggatgcaccaaaatcaCATTTATGGCTGAaactggacaaaaataaataatttttagaaTGCTAAACACTAAACATGCTATTGCTGGTTTTATAATATCTACCatttcattgaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K08620 ADAMTS5; a disintegrin and metalloproteinase with thrombospondin motifs 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145153 lncRNA upstream 59056 31201997 ~ 31202224 (+) True G107463
TU145144 lncRNA upstream 82937 31178086 ~ 31178343 (+) True G107454
TU145140 lncRNA upstream 97773 31162526 ~ 31163507 (+) True G107450
TU145138 lncRNA upstream 107581 31153480 ~ 31153699 (+) True G107448
TU145136 lncRNA upstream 109706 31150998 ~ 31151574 (+) True G107446
XM_022674977.1 mRNA upstream 550028 30672152 ~ 30711252 (+) True gart
XM_022674976.1 mRNA upstream 592536 30661999 ~ 30668744 (+) True LOC111193577
XM_022674380.1 mRNA upstream 713919 30540261 ~ 30547361 (+) True LOC111193471
XM_022674973.1 mRNA upstream 809679 29844100 ~ 30451601 (+) True ncam2
XM_022674975.1 mRNA upstream 809679 29844100 ~ 30451601 (+) False ncam2
XM_007237758.3 mRNA downstream 12319 31312740 ~ 31319149 (+) True adamts1
XM_007237757.3 mRNA downstream 25273 31325694 ~ 31341351 (+) True cyyr1
XM_022674980.1 mRNA downstream 46880 31347301 ~ 31402273 (+) False app
XM_022674979.1 mRNA downstream 46881 31347302 ~ 31402273 (+) True app
TU144751 other upstream 1480353 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 2541000 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 3194297 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 3239233 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5891841 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile