RNA id: XM_007238141.3


Basic Information

Item Value
RNA id XM_007238141.3
length 2125
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC103035907
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23632379 ~ 23638888 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcgcacacacagacactctcgCGCGCGGAAGGCACGCTCCTCTTCATTCCTTGCTGGAGAGCGCAGAGCATGCGCATGTTCCCCCGTTCGCCGTCGCCGCCGCTTCCGCGCGCGCTTTCCACGGAGGGTTTGGAGGGCTTGGAGGGCTGCTAGGGGTTGGTGGAGGTAGGGGCAGGAGAATGATGGACAGCAGGGCGCTCGAGCACCCGCCGCACGCCGCGTTCGGGGGCTCGCTGGGCGGCGGCGTGGTCGGCCTGGGCTTCCCctaccatcaccaccaccatcatcatcaccatcagctCGGACACCGACACGTGTATGAGCTGCCCGGCCATGCGCTACCCTCCGCCGCCGCTGCAGCAGCCGCGGCCGCGGCCGCCGCTGCCTCTGTGCCATTCTCCATAGACGGATTACTGAACGGCTCGTGCTCAGTGGGCTCCGGGCCGCTGCTGGGGTCCGCCTGTGGGGATGGACAGCAGTACAAGCTCTCCGaCGCCGGCGACCCGGACAAGGAGAGCCCGGGATGTAAGAGGAGGCGCACCCGCACCAACTTCACGGGCTGGCagctggaggagctggagaagGCGTTCAGCGAGAGCCACTACCCGGACGTCTTCATGCGCGAGGCGCTTGCGCTGCGCCTCGATCTTGTTGAGTCACGTGTGCAGGTGTGGTTCCAGAACCGGAGGGCCAAGTGGCGTAAAAAAGAGAACACCAAGAAAGGACCTGGCCGGCCAGCGCACAACTCCCACCCGACCACGTGCAGCGGAGAGCCAATGGACCCGGAGGAAATCGCGCGGCGGGAGCTGCAGCGCCTGGAGAAAAAGAAGCGCAAGCAGGAGCGGAAGTTGTTACGCTCACAGAACAAGCTTTCCGCTGGGGATCTCTTGCACACGCCCGGCTCGGACAGCGACAGCGGCGTTTCGCAGAGTACCGACAGCGAGGCCGCCCCGCACCCCGGCGCTCCGGCCCCGCGCAGCCCGCAGCACCACCAAAGACCCAGCGCCGCATCGAGCCGGAGCGCGGACGCGGGAGACTCGCCTCGGACATCGGACGGCGACGTCACACGTCCGTCTGCCTTCCACAAGCTCAGCCCGTTCAGCGTGGAGAGCCTGCTGGCCGACTCGAGCCCCCGGCGGAGACACGCGCTGGATTTGCAGCTGCCTCCGACGCCCCAGAGACCCCTGGTGGGCAAGGGCCACTTCTTGCTGTATCCCATCACCCAACCTCTTGGGTTCATAGTGCCACAGACTACAGCCAGAGCAGGCCACGGTGACGCAGGGGACTCTAGCCACCGGTGGCCCACTGATGATGACCAGACCAGCTTTCCTAACTCAGATCCAAATCATGAGAACGGTGGTTCCAGTCCAAACGAATCAAAGCCGGATCAATCCGAGGCTAAATCCCCTCAAACAAAGCTCTCACAGGGAGGCCAGTCGCCTCAAGACCACAAAgacacaagaacacacacttctgacaccaacacacaccaagaCATGGACTGAAACTGACAGGTCATGGAGCATTCCCAAAGCTAAACTAATCACaacattttttctaaaagcagACTGAATTTTGAATTCCGTTTtttaaaacgaaaaaaaaaaatccctaaaaaCGGGATATTCTTCCTTCAGGTGGATTACAgatttttgttcagtttttgaCTCACTGAACGGGCTTAGTGATGTCTGCTAGCCTAACCTAGCCTGACTTTTCCTAAGGGGAAGGAAAAAACAACATGAAATCCTCAAACATTGTACAAACGATGAATATCaaagatatttatatatgtaacgttttcataaataaaaattgtattgtAAAAGAAATGTGTTTTCACACCAAAGATATTCCGGCATTTGTTGGTAACCAAAACTGGTAGCATACAAGAAACAATTCTAGGAACCGTTTTTATAATTCATGAAATCCTCAAACATGCATATTATGTCTACTACTTTATATTCAAAAATCATCTcttgaaaaccatttatttaaatgtttttggacaggaacaaatgtttttttttctaactcacaaagaaccatttttattttttattaaaccagAACCTGCATTTGACTTAAAGGaaacaattaatttaaattaaatttgatgCAAAGG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09328 UNC4; homeobox protein Unc-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143123 lncRNA upstream 46162 23580228 ~ 23586217 (+) True G105940
TU143125 lncRNA upstream 48396 23580155 ~ 23583983 (+) False G105940
TU143074 lncRNA upstream 135823 23494075 ~ 23496556 (+) True G105906
TU143048 lncRNA upstream 179153 23445874 ~ 23453226 (+) True G105891
TU143036 lncRNA upstream 220335 23411283 ~ 23412044 (+) True G105879
TU143170 lncRNA downstream 9542 23648430 ~ 23648659 (+) True G105974
TU143180 lncRNA downstream 50258 23689146 ~ 23689374 (+) True G105984
TU143186 lncRNA downstream 94533 23733421 ~ 23733782 (+) True G105990
TU143201 lncRNA downstream 231524 23870412 ~ 23890084 (+) True G106003
TU143221 lncRNA downstream 293946 23932834 ~ 23933173 (+) True G106022
XM_007238137.3 mRNA upstream 79681 23524716 ~ 23552698 (+) True chtf18
XM_022674913.1 mRNA upstream 86371 23524716 ~ 23546008 (+) False chtf18
XM_007238135.3 mRNA upstream 142174 23480456 ~ 23490205 (+) True plk1
XM_015602690.2 mRNA upstream 172864 23454456 ~ 23459515 (+) True LOC107197111
XM_015602691.2 mRNA upstream 172864 23455126 ~ 23459515 (+) False LOC107197111
XM_022674918.1 mRNA downstream 331803 23970691 ~ 24115461 (+) True gpc6
XM_022674919.1 mRNA downstream 331803 23970691 ~ 24115461 (+) False gpc6
XM_007232254.3 mRNA downstream 1438048 25076936 ~ 25102573 (+) True slitrk6
XM_022674360.1 mRNA downstream 1733918 25372806 ~ 25374832 (+) True LOC103022503
XM_015607967.2 mRNA downstream 1743984 25382872 ~ 25386300 (+) True LOC103023109
XR_002650601.1 other upstream 812283 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 2264126 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 2603389 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 2639567 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 4709176 18919060 ~ 18923203 (+) True G104656
TU143216 other downstream 276747 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 348319 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 772320 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 1722856 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 1722856 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile