RNA id: XM_022674964.1


Basic Information

Item Value
RNA id XM_022674964.1
length 3425
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC103025657
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29417222 ~ 29519834 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCAGTCGACCGCAGTCTGACCGCCGATCACTATCTGCAGTGTCTCTCAACCATGCACAACACGCAAGGACACAACAACTGCCCTGATGCCACGACCGGACCATCACTGGATGACCATGGACTTGAGGGTGTTGAGGGTGTGGGCGTTGGGCAAAGCAGCAGCACAGACTCAAACTTCAAAATTAGGAGCCAAGTCAAGTTGGAGGCGCTGGACTCCAGTGAAGAGGAGGACAGCGTTTTTGAGAAGCAGCCACTCGCCATGGCCTCGAACAGCATCTTCGAGACCTTCTCCTCCTATCAGTCTTGTTTCACCAGAGACCCTGCCCCCGGGCGCCGCTTCACTCCCCCGTCCTCCAGCCTGGGTTCAGCTAAACTGGCTGAGGCGCAGGAGGCCAGTGGCGCCGCCCTGGTGGCCAAAGTGCGCGTGGCCGAGCGGAACATGGTGGAGGTGCTGTCCGACCACCCCGGAGAGCTCGTGCGCACCGACAGCCCCAACTTTTTGTGCTCGGTTCTGCCAACACACTGGCGCTGCAACAAGACCCTGCCCATCGCCTTCAAGGTGGTTGCCCTTGGAGATATCCCCGATGGCACGCTGGTGACAGTTATGGCAGGAAATGATGAAAATTACTCAGCTGAACTCCGCAACGCTACAGCAGCCATCAAGAACCAGGTGGCTCGCTTCAATGACCTGCGCTTCGTGGGCCGCAGCGGAAGAGgaaagagttttactctcACCATTACCGTCTTCACCAACCCCCCTCAGGTGGCCACGTATCAGAGAGCCATCAAGATCACCGTGGATGGACCCAGAGAACCACGGCACTCAAGACAAATGCAGACGTCTCCATCCTGGTCTTATGAGCAGTCCTACCCTTACCTAGGCCCCATTTCTGCACCAACGGTTCACCCCACCACGCCCATCTCCCCAAGCCGCAATCCTATACACTGTCCAGACCTGACAGCGTTCACCGACCCCCGTGTAGGTCTGGAGCGCTCCTTCTCCTCCATCCCATCACTTCCAGACAGTCGCTTCTCAGACCCCCGCGTTCCTTACCCCACCGGAGCCTTCACCTACACTCCCACCCCCGTTACCAACGCCATCGGCATCGGCATGTCGGCCATGACCGCCCCCACCGGTCGCTACCACACGTACCTCCCGCCCCCCTACTCTGCCGGTTCCTCCCAGGGCCAGGGTGGACCCTTTCAGGCCAGCTCCTCCCCTTATCACCTGTACTACAGCACCGCTGCCGGCTCGTACCAGTTCTCCATGATGCCTGGAGGGGGCGGCGGAGAACGCTCACCGCCACGGATCCTTCCACCCTGCACCAACGCCTCCACAGGCTCCGCCCTCCTGCACCCCTCACTGCCCAATCAGAGTGATGTCGTCGTGGAGGCTGAGGGAAGCCACAGCAGCTCTCCGACCAGCATGTCCGCCGAAGCCGTGTGGCGGCCATACTGAGCACCACTTTCACTGGACAGCGAAAGAGATGTCATGGCATGTTGACCAATGGAGTGTTGACGTTGGGCAGCTGAATTAGACGGGCTCTGTTTGTGGAGCAGTGGACTAAGAACTCGTGGACTCGTTTTACACAGCATGAGACtcatctttttctttgtttttttttctaacgaGTTGTGGAtaatttgttgttgttattgttattattattattattgatgttattattattattgcaataaTAATTCAACATTATCTTTGTTGCATTGTTTCCATTTGTCAATGAGACCAGCTCCTTCCATTTTTACACAATGATACACTGACATGGCACTCTTGTCCAACTCAGAATTAAAAGAAATGTGCATTTTTCTTGTCACAGTTCTGTTCTAAAGGACTTTGTTTCAAGTGTGAGCCTTCAAATACAACATACATACAACAGTTGTAACATGTATAGCtgccaaaataaaaaagcacgGTTCCAGGCCTGTCCTCTGGGAACTATTCAATTAAGTCATTTAAAGGATTAAATAATGACTTTGAGACAGTACTGCCTATTTTCTGATAGTAAATGAAAGAGTATTCATGAATAAGGATTATGCTGCGTTCCATTTGAGCATGGATGTTGGAATGATAGCTCATACATGTCAGATTTCCTACTAGGAAAGTCCTAGGCCTCACCAACCCACCAACAAGTTCAGAATCAAAGATGGCTGCCCTGCACATCGACAgaagtaaaagcagtagtattatacagtttattatacaAGACTTCTATTTGTTAAAAAGCCTctaaattcattaattaaattaataattaattaaaaataaacccaCCAATCCTGCTTAAAttctttataaacatttcctaacctttaaaaaaaacacttttattgtggtaatttccgcctctgcagcgccctctcaggtttaactgtgctataggcgtgtcctttggtacgcagacacatcacaatatgcaaatcagtctaTCAATAATACCCCCCCTGCTGACGACGTCCAATCATCTGTGTCTCACCGCTCAGCCAATaagctcctcctcctgctcagcctctaaacccatacatcacctagtgctcctcccaaactaccccttacattttttcttttgcctttttcaaatttgagctgagggtggagtcagctaattTCACAGGGTTTAGTGCCCATTTAATGTCATATTAAACCACACACTGTCTTACACACAGTCCTGCCCAATGTCTATCTGTAGACACTATGTTTTCATACTGTTTAGATGGGCAAAATTCTGTACAATGTGTTGTGATTAACTGGTATTGCTTGCCTGGCATGCTAACCCATGACAAAGCTAACAACAACAGCTGATATCTGAATGTTAAACTTGAACACACTCAACTTGAATGTGATGTAATTTCCATCGGCAACATTCCAACATCCGAGATAAATGGAACGCAGCATTTGCCCTATTAATCTGATTCACTCAGCAGTATGGCTAGCTCTGTGGTTAGCGCTATGCTAACAGCCCCAACATCAGTGCAGCCCCTTTTTGCAGTGAGTAATTTCCATTTAAAGGTTAAAACAGACTATTCATCTCTGTGGTACTGCAGTTTACGAGGCTCTACCTGGTCACTGCCCTTCAAGGTCTACCTCTCTCCGCTAAATTTACGATGCAGAACGGCCTGCTTTTCATATTTCCACGTGTTCCTAGCATAAAACAGTACGAAGGACGGCTTCGGATGAGATGGAAGAGACTCTGTCCCCCTGCTTTTGTGTAAATAGGCTGTAAACCACTTCCTGAGATGACTGGCCGAGACCCATTTGATGACGACGTCAATCACGTGACACTGTCCTTCACATCCACAAACTGAAGACGAGCAACATGCAGCCTAGCCTACGTGTCTTTCTTTTTAGCACTGCTTTATTTTGTGAATGTAAATCTTTGTTTGTGAAGAAGCCAATTGTTTCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144604 lncRNA upstream 11214 29405988 ~ 29406309 (+) True G107014
TU144602 lncRNA upstream 13255 29403886 ~ 29404268 (+) True G107012
TU144583 lncRNA upstream 49842 29367366 ~ 29367681 (+) True G106993
TU144582 lncRNA upstream 50353 29366686 ~ 29367170 (+) True G106992
TU144537 lncRNA upstream 94176 29322545 ~ 29323347 (+) True G106954
TU144637 lncRNA downstream 5821 29525655 ~ 29575347 (+) True G107044
TU144660 lncRNA downstream 75204 29595038 ~ 29597014 (+) True G107056
TU144662 lncRNA downstream 77424 29597258 ~ 29600584 (+) True G107057
TU144670 lncRNA downstream 95444 29615278 ~ 29621512 (+) True G107064
TU144685 lncRNA downstream 136077 29655911 ~ 29656234 (+) True G107074
XM_022674956.1 mRNA upstream 175926 29208552 ~ 29241597 (+) True LOC103024513
XM_022674959.1 mRNA upstream 175926 29228723 ~ 29241597 (+) False LOC103024513
XM_022674957.1 mRNA upstream 178899 29208551 ~ 29238624 (+) False LOC103024513
XM_022674958.1 mRNA upstream 179550 29208551 ~ 29237973 (+) False LOC103024513
XM_022674953.1 mRNA upstream 257999 29149065 ~ 29159524 (+) False LOC111193573
XM_022674966.1 mRNA downstream 18503 29538337 ~ 29558043 (+) True donson
XM_022674967.1 mRNA downstream 43362 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA downstream 43362 29563196 ~ 29588122 (+) False LOC103025432
XM_022674379.1 mRNA downstream 136703 29656537 ~ 29658422 (+) True LOC111193470
XM_022674973.1 mRNA downstream 324266 29844100 ~ 30451601 (+) True ncam2
TU144257 other upstream 697243 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1350540 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1395476 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 4048084 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 260492 29780326 ~ 29780927 (+) True G107117

Expression Profile