RNA id: XM_022674623.1


Basic Information

Item Value
RNA id XM_022674623.1
length 1059
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC103036567
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 6538347 ~ 6548346 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTCCAGAACCCGCCGTGCTGGAAGGGGCAGTTTGGCCGCCGTGTTAAGAAACGCGTTtcactttttgtacatttttccgCTTAAAGCAGATCATTTAGGGCATCATGAGCGACAACGAGAAGGAGTATGTGGAGCGGGAGTCACGATCCAGAAGCCGGAGCCATAGAGTCTCTGCTAAATCCAACAGCGAGTCCCCGAGACGTTCCCCAGCGGGGTCTAAAGATGGGTCCCATCGTTCCAGATCTCACTCCAGGTCCAGATCTAGGTCCAGGTCCCGTTCCCGCCGGAGCACAAGGAGGCGCTACTCTCGTTCACACTCGCGCTCTCGTTCACGCTCCCACTCTCGCCGCCGCCACTCTCGCAGCCGATCCTACAGCCATGAGCATCGCCGCCACAGAAGCCACAGCCACTCTCCAATGTCCAACCGCAGACGGCATGTCGGCAATCGGGCGAATCCAGACCCTAACTGCTGCCTGGGTGTGTTTGGTCTGAGTCTTTATACCACAGAGAGAGATCTGAGAGAGGTGTTCTCTAAGTACGGTCCTCTGAGCAGCGTCAGCATCGTGTACGATCAGCAGTCACGCCGATCACGAGGCTTCGCTTTCGTCTACTTCGAGAACAGGGAGGACTCTAGGGAGTATCATTCTTTCATAAACTGTTCTAATCAGGCTAAAGAGCGAGCTAATGGGATGGAGCTGGACGGGAGACGTATCAGAGTGGACTATTCCATCACTCAGAGGCCACACACCCCCACCCCGGGCATCTATATGGGACGACCCACATATGGGGGAGGAAGGCCGAGTGCGTCCGGAGGCCGCTCTAGAGATTATGATCGCGGTTACGATCGAGGATACGAACGCTATGATGACAGAGAATACTACAAATCTTACAGGCGCAGGTCTCAATCACCCTACTACAACCGCGGAGGGTACAGGTCACGCTCTCGGTCGCGGTCGTACTCCCCACGTCGATACTGAAGAATCGAgtagaaggatggatggatggatggatggatggatgatggatggatggatggatggatggatggatggatgga

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12897 TRA2; transformer-2 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137019 lncRNA upstream 1445 6529751 ~ 6536902 (+) True G101483
TU137022 lncRNA upstream 4589 6532003 ~ 6533758 (+) True G101485
TU136978 lncRNA upstream 130536 6339533 ~ 6407811 (+) False G101452
TU136995 lncRNA upstream 165050 6372757 ~ 6373297 (+) True G101466
TU136983 lncRNA upstream 190052 6338045 ~ 6348295 (+) True G101455
TU137028 lncRNA downstream 30911 6579257 ~ 6627008 (+) True G101490
TU137157 lncRNA downstream 139939 6688285 ~ 6688632 (+) True G101583
TU137194 lncRNA downstream 449744 6998090 ~ 7013954 (+) True G101610
TU137186 lncRNA downstream 450740 6999086 ~ 7094070 (+) True G101609
TU137213 lncRNA downstream 546201 7094547 ~ 7120309 (+) True G101626
XM_022674624.1 mRNA upstream 9034 6521314 ~ 6529313 (+) True LOC103031597
XM_022674627.1 mRNA upstream 25089 6512464 ~ 6513258 (+) True LOC111193520
XM_022674625.1 mRNA upstream 36729 6484337 ~ 6501618 (+) True LOC103025984
XM_022674615.1 mRNA upstream 75762 6351250 ~ 6462585 (+) False LOC103031289
XM_022674610.1 mRNA downstream 5465 6553811 ~ 6633366 (+) True igf2bp2
XM_022674612.1 mRNA downstream 34366 6582712 ~ 6633366 (+) False igf2bp2
XM_022674611.1 mRNA downstream 34855 6583201 ~ 6633366 (+) False igf2bp2
XM_007246654.3 mRNA downstream 143929 6692275 ~ 6733982 (+) True LOC103037816
XM_022674629.1 mRNA downstream 406973 6955319 ~ 6997446 (+) True LOC103032856
TU136980 other upstream 251613 6282025 ~ 6286734 (+) True G101452
TU136387 other upstream 1446599 5086760 ~ 5091748 (+) True G100975
XR_002650570.1 other upstream 1892991 4629123 ~ 4645356 (+) False atg4d
XR_002650569.1 other upstream 1892991 4629124 ~ 4645356 (+) True atg4d
TU136173 other upstream 2270521 4250083 ~ 4267826 (+) True G100820
XR_002650572.1 other downstream 406973 6955319 ~ 6997446 (+) False LOC103032856
TU137208 other downstream 596456 7144802 ~ 7146340 (+) True G101622
TU137786 other downstream 2166493 8714839 ~ 8719235 (+) True G102015
trnar-ucu_1 other downstream 2285494 8833840 ~ 8833931 (+) True trnar-ucu_1
TU138311 other downstream 3977331 10525677 ~ 10526160 (+) True G102411

Expression Profile