RNA id: XM_007246677.3


Basic Information

Item Value
RNA id XM_007246677.3
length 2659
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC103044305
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7542340 ~ 7560927 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTCGAGCTCCTCTCAGACGCTCGCTCGCGCACtcactcagtcagtcagtcagaaattcagtcacacacacagacacgcttGCACGCGCGCGCTCGCTCGCCCGCCGTCCCTCCGATGCGATCAGCTCGCGCTGAAGAAGCTCGTGCGAGGCGGGGAAACGGACAGGGTCGCGCGGACGGACGCGTTTGATGGCAGCAGCGCTCCTCACAGCCACGAGCTCCGCGCTCGCGCCGCCGGGACCGGACGGGTACTGCGGGGAGGACCCCTGCGCCCTCTTCCACTTCGACTGCAAGACCCCCCAGCCGGACAGGGTGTTGGCCAACGAGTATGCGCAGGCGAAGCTCGAGATGGACAAATACCTGACGCCTCAGCTCCAGGCTTCTCCATTGGCCAAGAAGGACCACCGCGAGAGCTTGTCGGTGGTGGACCAGTTGTTTGGGGACGACCAGGGCTCCCCGTACAGCATCAACATGAACGTCTACTTGCCTGACATTGCCTACCTGCGCACTGGCCTGTGCCGCCCGGCCCGGTCTTCCCTCCCCAGCCAAGCTAAAAGCAAGCTGGTGAACTCCTCCCCCTTCTCCTCTCCACTGGACTGCCCCATCAGCACCTCCATCCCAGCTCCACCAACACTGCCAGAGTTCACCAGCATCTTCAGCTCGGCTTCTGGACCGGGCGTCGGCGGCATGGATGCCTGCGATGCTTCCTCCAGCATCTTTGTCAAGCAGGAGATGCCCTCTTTTGAGCTTCCCCAGGACGGCCACCTCTTCCACCTGCTCAACTCGGAGCTGGACGACCCAATCCATGGTGTCTCAGACTCTCATAATCACAACCACAACCATGCCCACACCCATGGCCTGCCCTCACAGGTGCCTTCCCAGGTGCCCTCGCAGGTGCCTGCCTTCCACGACCTGCACCTGCCTGCCCCACAGACTGAGGTCAAGCCCTACTGCGGCATGCAGGCATCTGGGTACCACATGGGTCCGTCTCACTTCGCTCAGGGCCAGGCACAGGCCAAGTCCCCCTACCTCCCGCCCTCGCCGCCAAGTTCCGAACCCGGCAGCCCAGATCGACAGAAAGAGCTGCTGCAAAACCTGACGCCTCCTCCGTCTTATGCTGCCACCATTGCGTCCAAAATGGGGGTCCACACACCCAGTCATCCCATGCCCACGTCCTCGAGCACTCCTGCAAATTCCGGAACTGTAGGCATGCCGGTCCGCTACAACCGCAGGACGAATCCTGACCTGGAGAAGAGGCGGATACACCACTGCGACTTTCCAGGCTGTAAGAAGGTTTACACCAAGTCCTCGCATCTGAAAGCTCATCTGAGGACGCACACCGGCGAGAAGCCGTACAGGTGCAATTGGGAGGGCTGCGACTGGCGCTTCGCCCGCTCCGACGAGCTCACGCGCCACTTCCGGAAACACACGGGAGCCAAGCCTTTCCAGTGCGCCGTGTGCAGCCGCAGCTTCTCACGCTCCGACCACCTCGCCCTGCACATGAAGAGACATCAGAActaatcacacacactctctaacaaacacacacttttatatactgtatgaaattactgtatacacacacacacactgacaatcatcacacatatacacagtacacaaatacacagatacacacacaggcctacatttatacattttgtaCAGGCatagctacacacacacatatacatatacatactaCAAAGCTAATTATGCACTTGAAGAGACActagaacaacacacacacacacaaacacttttgTAGCCAATTTAGACGACCCTTCTTTAGTATCTAAGGTGAATTTCTCCCTTCAACTTGTTCACACTGTGTTTACAAGCTTCAGCTCCCAACCCATCAGTCCAATCTTTAATAGTCTTTAATAGATCTGATCTGCCCTCTAAAGCTATTACAAAACatgtataataattaaaaatacatatatataataaaaataatataataataataaggtgcAAGGGGGTGAAGGCCCTACatacaaattatattataaaaaagctACCATAAGATAAGTCTCTATCTGATGAACTGTATATGTAAGGACAGGCACACACAGATaccaatataaaatgtattaattattaattttatcgaAGCAGTTAGGCTTACAGGGGTAGTtagagacaggcagggtcagtatcaAAATGGcagagataataaaaaaaacatataccagAGTGAGAAGGCAAAATGATCATACTCAGCAAATTCAACACGTAAAAGGCTAGGTAAAAAGAGAAATCTAAATacaacagtacagtacaggaaCAACAGTAACAGGAGGGTATTTATACAAAGACAGATAGGTGTGGGCAATAAAAAGCTCGGTGAGCGTGATCAGGAGTCCAGAGCATGCAGACTGACAgtatatatcattttatataatataacagggCTGCACAGTACTCAGCATTACTTAATATTGTtccagaattaaaattgtgtaatCTCAGTAgagcaatgttttattttttaaattatatttatctatatctATACAGTAACATTAATTTTACTCCAAACGTTGGGTAAACAGAGTGATTTACTTTATATTGACACGTTGGGTCACTGACCTTCAGTAATGTTACTTGtaaattttttaccttttaaagtttaatagaacaatatatattgca

Function

GO: NA

KEGG:

id description
K09206 KLF5; krueppel-like factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137410 lncRNA upstream 42503 7497431 ~ 7499837 (+) False G101777
TU137411 lncRNA upstream 42503 7498593 ~ 7499837 (+) True G101777
TU137412 lncRNA upstream 42503 7498859 ~ 7499837 (+) False G101777
TU137406 lncRNA upstream 43843 7496470 ~ 7498497 (+) False G101776
TU137408 lncRNA upstream 43843 7496737 ~ 7498497 (+) True G101776
TU137419 lncRNA downstream 523 7561450 ~ 7600202 (+) False G101778
TU137416 lncRNA downstream 797 7561724 ~ 7610906 (+) True G101778
TU137418 lncRNA downstream 797 7561724 ~ 7628715 (+) False G101778
TU137420 lncRNA downstream 797 7561724 ~ 7600202 (+) False G101778
TU137497 lncRNA downstream 166230 7727157 ~ 7727563 (+) True G101832
XM_022674648.1 mRNA upstream 3706 7469345 ~ 7538634 (+) True pibf1
XM_022674649.1 mRNA upstream 3706 7469345 ~ 7538634 (+) False pibf1
XM_022674650.1 mRNA upstream 31935 7469343 ~ 7510405 (+) False pibf1
XM_007246674.3 mRNA upstream 98845 7435630 ~ 7443495 (+) True tpt1
XM_007246670.3 mRNA upstream 149115 7384757 ~ 7393225 (+) False LOC103042156
XM_022674651.1 mRNA downstream 148372 7709299 ~ 7770528 (+) True LOC103034778
XM_022674652.1 mRNA downstream 148372 7709299 ~ 7770528 (+) False LOC103034778
XM_015605166.2 mRNA downstream 148372 7709299 ~ 7770528 (+) False LOC103034778
XM_007246696.3 mRNA downstream 980067 8540994 ~ 8543564 (+) False LOC103023156
XM_007246697.3 mRNA downstream 980070 8540997 ~ 8543564 (+) True LOC103023156
TU137208 other upstream 396000 7144802 ~ 7146340 (+) True G101622
XR_002650572.1 other upstream 544894 6955319 ~ 6997446 (+) False LOC103032856
TU136980 other upstream 1255606 6282025 ~ 6286734 (+) True G101452
TU136387 other upstream 2450592 5086760 ~ 5091748 (+) True G100975
XR_002650569.1 other upstream 2896984 4629124 ~ 4645356 (+) True atg4d
TU137786 other downstream 1153912 8714839 ~ 8719235 (+) True G102015
trnar-ucu_1 other downstream 1272913 8833840 ~ 8833931 (+) True trnar-ucu_1
TU138311 other downstream 2964750 10525677 ~ 10526160 (+) True G102411
TU138581 other downstream 3726942 11287869 ~ 11294815 (+) False map2k7
TU139745 other downstream 6368138 13929065 ~ 13935667 (+) True G103376

Expression Profile