RNA id: XM_007251327.3


Basic Information

Item Value
RNA id XM_007251327.3
length 2345
RNA type mRNA
GC content 0.40
exon number 1
gene id arl11
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12056110 ~ 12058454 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTCAGCAAATGTTACTTTCTCGTTTTATATCTCGTTATATACTGTTGCATTTCACACATTTCAGCACCTAGCTTGTACAGTACAAGTTTGTACTGTGGCATTTTTAATGCCATGTTTTGTAAAAACACACTTGTTGGACCAAACCACACTTGAGTCAGCTTTTTATTAGAGCTTAAATTGCCAGTaacaacatttctcatttttgacCCAGAGGGTCAAATTAAGAAGAGTTGAGCCACAAGATTAGGTTCATGGATTGGGAAATTGTTACAGAATGTTCAGTAAGAAAAAGATCCTCAACACACGGCAGACACACCTTCATCTCACAATGTGGATGAACTTGTTTAGTTGCATCACATGGTGGAGGTATTTAGGGAAACCTGCATCAGTAGGCTAAGCTCCTGTGGTTACAGCAACTACAGCTTTAGGTCTCACTTCTGCTTTAGTTGATGCTTTTTCCCAGCACGAAAGCTTTCACAGCAACAGCAAAAGAAAGGTGCTCCATCTTGCTTGGTGCCCAATCTCCTAACCAGGAACAACCTCTGCCTCAAAGAACCCTCTTCATTTGCACCAAGAAAACCTAGCAGACTAAAATGGGAGTCATGCTATCAAAGAAGTTCATAAAGACTCAGAATGTGCTTCTACTGGGACTGGACTCTTCTGGTAAGACCACTTTTCTCTACAGGCTCTACCAAGGGGTCGTAATGGACACTTTGCCCACAGTTGGCTTTAATGTGGTGACTATTGAGATGGACAAGAAGACTACGCTCACTGTTTGGGATATAGGTGGGCAGGACAAAATGCAACCCAACTGGAAGTACCACCTGGAGGGCTGTGAAGCTCTGGTGTTTGTGGTGGACGCCACTGACCGTGCTAGGATGGACGATGCCGGAAAGGCTCTCAAGAAGGTCTTGAAAGATCCACACATGACAGACGTCCCTTTGTTGGTTCTGGCAAACAAATCAGACCGGCCTGACGCCATGACGGTCAATGAAGTGTCCAAAGAACTGGATATGGAGAGCTACAAAGACAGGATTTGGGAGATCCAAGCTTGTAGTGCTCTGAAAGGACTGGGAGTCCAGCAGGCTTTTCGCTCTGTGACCAAACTTCTTCAGAAAAACTAGGAGAGAGGGATGAGGTCGGACTCTAGCCGTGAACGGTCTGAAACTGTTGTATTGACACTTGTTTTGTTCATCAATGTAATATTATTACCAATGCTGTTCTTTTAACCTGGAGGGCTGTGAAGCtctggtgtgtgtggtggacgCCACTGATCGTGCTACGATGGACAAGGCCGGCAAGGCTCTGAAGAAGGTCTTGAAAAATCAACAAAGGCCAACAGTCCCTTTGTTGGTTCTGGCTAACAAATCGGACCTGTCTGATGCCATGGCGGTCAAAAAAGTGTCCAGGGAGCTGTATTGGAGAGCTACAAAGACAGGACTTGGAAGATCCAAGCATGTAGTGCTCTGAACAGACTGGGAGTCCAGCAGGCTTTTCGCTCTGTGACCAAACTTCTTCAAAAGAAGTAAGAGAGAGGAACGAAATCAGACTCTAGTCAAGAACAGTTTTAAACTGTTGTATTGtcaattatattgtttattaatgtaatattattatcactgttgttctttagtattaatatagcACTTACTGTATCTATATTTATAGTGTGGCTATAGAGGTGGAcaatatattaatgttttattggatATCATCAGTACTTAAAGAAAACTGACCCTGTaccaactgtacatttcattacagagagtgtaaaaattctgtttaattggatgatgtgcagaaaaacaataaaaacactgttttatgtATGAAAGAGAATTGGAATAGCAGAACCTGAAACTGTGatataatacaatgtttttaccatatcacccagctctaTCAGTGCATGATTACTTATGCCAACCTGTGGGGGCTTTTATACTGCTACTATCAATATCGAAATTGTATAGTATTGAGATTAAGAAATATATCACAATTTTTGCCAAATCATCCAGCCATATGTTGATCCTTCTGACCTTGactaaatatatagaaattaaCTTAAGTAATACTTTTTTCTACAGTATGGTGTAGTGACTGATTAACATGTGACCTTCAAAActttgatttgcttatttatttaatgacacTAGAACAATGCACTGAAAGTTAGAACTAAAACATTGCACTAAAAGCCAAATAACACTGATAGATGAATGTgtgatttaaattaaatataaagtgaATTGTCCTATAACTGTATAAAACTGTTGTACAGGTGAAATATATCATGTGTTAACAAGAGAAAAGAGATTAAATAACTGTCTAACTGTGAAacta

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07959 ARL11; ADP-ribosylation factor-like protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138954 lncRNA upstream 5397 12046226 ~ 12050713 (+) True G102822
TU138943 lncRNA upstream 31352 12009277 ~ 12024758 (+) False cab39l
TU138930 lncRNA upstream 68911 11986963 ~ 11987199 (+) True G102810
TU138929 lncRNA upstream 69221 11986586 ~ 11986889 (+) True G102809
TU138919 lncRNA upstream 277352 11771576 ~ 11778758 (+) True G102804
TU138946 lncRNA downstream 5082 12063536 ~ 12067895 (+) True G102816
XR_454929.2 lncRNA downstream 67467 12125921 ~ 12127541 (+) True LOC103046989
TU138993 lncRNA downstream 80040 12138494 ~ 12138702 (+) True G102850
TU138998 lncRNA downstream 86435 12144889 ~ 12194777 (+) False LOC111193532
XR_002650582.1 lncRNA downstream 86451 12144905 ~ 12160608 (+) True LOC111193532
XM_022674708.1 mRNA upstream 31346 12011234 ~ 12024764 (+) True cab39l
XM_022674707.1 mRNA upstream 33883 12000639 ~ 12022227 (+) False cab39l
XM_022675032.1 mRNA upstream 59383 11986919 ~ 11996727 (+) True LOC111193615
XM_022674704.1 mRNA upstream 422335 11631733 ~ 11633775 (+) True LOC103035965
XM_022674700.1 mRNA upstream 605727 11404244 ~ 11450383 (+) True LOC103036596
XM_007251371.3 mRNA downstream 298576 12357030 ~ 12378962 (+) True LOC103032463
XM_007251339.2 mRNA downstream 453263 12511717 ~ 12522303 (+) True cryzl1
XM_007251340.2 mRNA downstream 453263 12511717 ~ 12522303 (+) False cryzl1
XM_022674725.1 mRNA downstream 454737 12513191 ~ 12522303 (+) False cryzl1
XM_007251347.3 mRNA downstream 476826 12535280 ~ 12539566 (+) True cbr1
TU138581 other upstream 761295 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 1529950 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3222179 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3336875 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 4909770 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1870611 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 2202171 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 2560181 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2632589 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 4392721 16451175 ~ 16458209 (+) True G104000

Expression Profile