RNA id: XM_007251348.3


Basic Information

Item Value
RNA id XM_007251348.3
length 2917
RNA type mRNA
GC content 0.43
exon number 17
gene id LOC103025394
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12546334 ~ 12561111 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAGTGCGCGTGCACGCAGAGGAGCGCGCGCTCTGAGAGTGTTCGGACAGTGACCGTTACAGCAGCTCCGCGAAAATACGcgttattttacacaaaaaaactaaataatggaGACTTATAAACGGAATGGGATACCCCTGAGCACACTCAATCCTAAATTCCTGCACACTAATTCCACCAGCCATACCTGGCCCTTCAGCGCCATTGCTGAGCTAATAGACAATGCTTACGACCCAGATGTCTGTGCCAAGCAGTTCTGGATAGACTGGACGCGCATCAAAGGGCTGGACTGCCTCTCATTCATGGATAATGGGGCAGGCATGAACAGAGCCAGACTACATAAGATGCTTAGcTTTGGTTACAGTAACAAGGAAGCTGTGAAAGACCATATTCCAGTGGGCATCTATGGCAATGGCTTTAAATCAGGCTCCATGCGTCTGGGGATGGATGCTATTGTTTTTACGAAGACCAAAAAAAGTATGAGTATAGGTCTGCTGTCTCAGTCTTACCTGCAGGCCATTAAAGCCCAAAAGATCATGATCCCTATTCTCACCTTCAGACGGGATGAGCAAAACTTACCAGAAGACGGAGCCAGTTTGGATGCTATCCTTAAGTATTCCCTATTTAACACAGAGAAGGAGCTGTTCTCTGAGTTGCGTGCCATCATTTCTGCCGGACCCACTGGCACACGCATCATTATCTGGAACCTGCGCACgACCACAAGCGGCGAGACAGAATTTGACTTTGAAACAGATAAATATGATATTCAGATTCGAGCGAATGCCAGCGAAAACACCAGTGACAGTCTGGCAATGATGCCAGAAAGTAGATATTCTCTAAGAGCATACTGTAGCATTCTGTACCTGAAACCACGTATGCAGATTAACATTAGAGGACAGAAAGTGAAAACACAGCTTATCTCCAAGAGTCTGGCTCATATCGCCAATGACCACTACAGACCTCCATACCTAACCAAGCGCATTCGGATCACGTTTGGGTTCAACACTAAAAGAAGGGAGCATTATGGCATCATGATGTACCATAAAAATAGACTTATCAAAGCTTATGAAAAAGTGAGCTGCCAGCGCAGGGCAGAGAGAAATGGTGTTGGAGTCATTGGTGTGATTGAATGTAATTTTCTCCAACCAACGCACAACAAGCAGGACTTTGATGACACAGATCAATACAGGAAAACCATGCATAACCTAAGCGTGAAACTGGAAGAGTACTGTAATGAGATCCGATACAAACGCAAGAAAGAGGACCCAAAATGCACCATTCCAATAGAAGATACAGTGAAAGTTCCGGATCAGGTCTGGGTCCAGTGTGACAGCTGCCTGAAGTGGAGACGACTTCCAGATGGCTTTGACTGCAGCCGCCTTCCAGAGAAATGGTTCTGCAACATGAACCATGACACACAATTTAGGAGTTGCATGGTGGAAGAGGAGCTCAATGATGAAGAAGAGAAGCAAAAGTCATACCCTAAACCCTTCAAACGCCAGAAAAGGAATAGCAAAAGTCTACAAGAGGAGAATGTGCCAGAGGGACTAGAGACTTCAAGCCCAGTATCTCCTCTGCCAGCCAGGCAGCCCAAGAACACTGTGTCCGGGGAAATGTATCAGTCTGaaCACAGTCCATCTCTGGATCACAGACCACAGCTCCCTCTAGTCAATCTCAGTGCCCTCTCTAATCCACGAAAAAGGATAAAATGGAAACGCACTTTAACTGAAGAGGAGTCCACAGCAGGAAGCATTGTATCATGGGATCCTTTTTCTCCTGAAGCAGCTGGCACTTCCACTCACCCACATTTCAGTCCTGAGGTGAaggaaaagaacaaaaaatctgAGGTAGTGGGAAATTTGAATTCAGATAAACAGATGAACAATGAAGAAAACCAAATCACAGAAAGGTTTGAGCCGTACCAGGAGCCTGttgaggaggatgaagaggggcaagagagagaggagttaACCTCCACAGATCTACCACAGTCTGACTCTAAACAAGAGTCAGAAAATGCTTGTGACACTGAGGAGGAGCTTTGGAGGCAGGAGAAGGACAGACTGATGGATATGTTGAGGGAGGCTGTGGAGGAGAGGGATATGTGCAAGGAGGAGCTGGAGGTGATTCGTGGGCAATGTGCTGCCCTAGAAGATGGGAGGAGTCAACTTCTGAGCAGGCTAGACAAGGTTGAAGAAGAGAAAACCAGGCTCTCGACCCTGTGTGATCAGCTTAAGTCCAAACTGAAGATGCTGAAAACAGAGATGGATGATAAAGAAGACAGTGCCCTCAGACAAGAGAGGATGAAGCTGAGGAATTTGCGAGTCAGCCTGGGTCATCTGCTAGTGTCCTTCATGCCTGCTCTCAGCCTGGAGCAGGTGGACTTCAGTAGTGACATCATTGATGAGCTCCTTAAACAGGTCCTACAGGAAGTCACTCAGAGCAGCGTAACGTAAATCTTAATTTTTAACCTTGACACAGCCTGCAACAGTTGTATTTAACAGTCTCATTTAATTGTTTAACTTGTaatttacatgtttattattttactgtccTACATTTATTACTAAAAGCATTTTTGCTTTTCATTTTTGATTATTTGTAATGAGTTTCTTTTGCTTGTAtgattgtttaattattttatgtactcttaatattttttaatattattgtgttctctgctgaactgttttatttagtagcccttacttttatttttaacttcaaTATTTCTTACTATTATTGTTCtatatcatttttataataaaaaaaaagaatcataattttattttcttatttcaaAGAGCTTGCTATACGTTTGAGTTCTAATTTTATTCTGTTAATTCCTTGTGTGTAATGCTTGGCTACATTATAAATTTACAGTTTAAGTTTATATAAAGGTGGATTGATGTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139117 lncRNA upstream 24044 12483622 ~ 12522292 (+) False cryzl1
TU139094 lncRNA upstream 123519 12416419 ~ 12422817 (+) True G102917
TU139092 lncRNA upstream 131363 12414166 ~ 12414973 (+) True G102916
TU139055 lncRNA upstream 144082 12379091 ~ 12402254 (+) True G102902
TU139054 lncRNA upstream 163703 12379091 ~ 12382633 (+) False G102902
TU139239 lncRNA downstream 65088 12626199 ~ 12740168 (+) True G103023
TU139242 lncRNA downstream 93490 12654601 ~ 12676518 (+) True G103025
TU139295 lncRNA downstream 206105 12767216 ~ 12783303 (+) True G103067
TU139296 lncRNA downstream 214143 12775254 ~ 12782304 (+) True G103068
TU139294 lncRNA downstream 214966 12776077 ~ 12783303 (+) False G103067
XM_007251347.3 mRNA upstream 6770 12535280 ~ 12539566 (+) True cbr1
XM_007251339.2 mRNA upstream 24033 12511717 ~ 12522303 (+) True cryzl1
XM_007251340.2 mRNA upstream 24033 12511717 ~ 12522303 (+) False cryzl1
XM_022674725.1 mRNA upstream 24033 12513191 ~ 12522303 (+) False cryzl1
XM_007251371.3 mRNA upstream 167374 12357030 ~ 12378962 (+) True LOC103032463
XM_007251350.3 mRNA downstream 7468 12568579 ~ 12733197 (+) False bcl9
XM_007251349.3 mRNA downstream 99142 12660253 ~ 12733197 (+) True bcl9
XM_007251353.3 mRNA downstream 99142 12660253 ~ 12733197 (+) False bcl9
XM_022674727.1 mRNA downstream 100990 12662101 ~ 12733197 (+) False bcl9
XM_022674728.1 mRNA downstream 201155 12762266 ~ 12767170 (+) True LOC103027506
TU138581 other upstream 1251521 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 2020176 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3712405 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3827101 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5399996 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1367954 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1699514 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 2057524 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2129932 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 3890064 16451175 ~ 16458209 (+) True G104000

Expression Profile