RNA id: XM_007251350.3


Basic Information

Item Value
RNA id XM_007251350.3
length 7490
RNA type mRNA
GC content 0.53
exon number 12
gene id bcl9
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12568579 ~ 12733197 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAATAGGCCCCTCAAGTGTTCCCCCCGAAGTCGCTTTAATGTTGTCCTAGAGTCTCGAGGCTGAAGGGGACCGAGGATTGCAGGGGAAAGAGAAGCCTTTTGTGTGgatgtgttgtgtgagtgtgtgtgcactctttctctcctcctcctccgcctcCTCTTTCTCCTGCTCCTTCCTCTTCGTCTCCTCCGGGCCGGCGCGCTGGACAAAGGGGAGGGGGACAAAAGCTCGCGGAGGAACGGCCGAGGAAACAAAACGATGAACGGAGCCCGAACCGTGCCGTGCGCGCGCGCGTTGGCTCGGGGGCGCGCGTGAACGAGGGAAGCGtgtgagatagagaaagagaaatagagtgagagtgtagagagcagagaaagaaagaaagaaaggggctgaaagaagaagaataacagagagagagagcgagaggagaaaagaagaaaaggaagaaagaggCAGTATCAACACCAGGAGCAAGAGAAGGGGTGAGAGACATAGACATAAAGCAAgccagagaagaagagaaagagagagaaagagatagagaagggATTTCGCACATTGATGAGAATAATTACACCAGATTATTGGACGATGTTTGGATGATGACCACCAGACCAGACCCAACCAAACCTGCCGAATACGCCAACAATGCAAGGTTTGCGCATGGATTTTCTGATCGTCTCCTGAGAGAAAAACTGTAGTCTCCACTGCTCTGAAACAACCCCAGGACTCTTAttccacaaaacacacacactgaacactggtATAATCGTCAGGACAAGAAAAGGTGCCCACCTAAACAAGCACACgtggacacaaacacacacggaCTGGATCTACGGGATCTATCTCTTCAGATGAGGAGGAGCCGGAGATTCTGAGAGACCTCAGGGTCATTCAAGatcTTAGCGTAGTGTCCCGTTGCAGTGCAGAGACAGCCATGGCCACGGCTATATCGTGACACGCAGGGACATGTGTGGCCAGGGGCTGTGAGGGCTCCGCGGGGAGACTCCAGGCACGCCCGCACGGAGAATGCTGGAGGTGCAGGAGGAGcgaccaccagcagcagcagcaggagcaacTACGGGGACAGGGACGGGAACGGGAACAGGAACGGCCAGCGGAACGGCATCCAGTGCCACGGCTAGGAAGGAGCGAGCTAAAGAACGGCAGCAGGAGGAGGGCCAGGACTGCAGCGGCCCTGCAGCAGCCACCACCGCCGGGCCCCGCAGCGCCCGGGCCAAGGTCACGCCCACGGCGGCGCCTCCACCCACACACGCCCACtcgcactctcacacacactcgcacacgcCCAGCCCTCACCAGCACACTACTGCTTCAGCCTCGGTAGCTCTGGGACTGTCGTCAATGCATTCCAGCAACCCCAAAGTGAGAAACTCTCCATCAGCTAACACTCAGAGCAGTCCAAAATCCAAGCAGGAGGCCATGGTGCGTTCACCACCCGTGATGTCTCCCTCCAGCGCTGCCCAGATGGACTCCAAACTGCCCAATCAGGGAAAACAAGGAGGTGCTGGCAGCCAATCGCAGCCATCTCCATGCGATCCCAAGGCACTGAGTGGAAGCCACACGCCCAAAGGCCCTCAGGGCTCTGTGGGGGGCATGGGACTCAAAAATGGACAGGGCTTGAACTCTGGCAATGGGGCAAAAAGCAagattaaaagagagagaagcactTCAGTCGAGTCCTTCGAACAGAGGGATACAGGGACGCCCAATAACGACGGGGACCAGAAAgAGCTGGGCAGTAGGGCAAAAAGGTTATGTGTTGCTGAACGGCGGCAGCCCTACAGTGGAGCCGATTGGTGTTCAGGGGGAGAGAGTGACGAGGACGACCCAGGATTCTTTAaCTGTAACTCCAGTGACATCAAACCAGATCCAAGCTCCCTGGCAGGATCCACACCTACACACAACGCTGTTGGAGGGCAGAACACAGCATCAGAATTAGGCAGCAATCAGAAACCTGGGTCTAAGGTCGTTTACGTCTTCACGACGGAGATGGCAAACAAGGCAGCAGAAGCGGTGATAACAGGCCATGCAGAGAATATTATATCTTATCACATGAACAATATCTCCAACGGCAAGGGTGGCAAGCCACAACTTCCCCTGAACAATCAACTTGGACCCCATCAGAATGACCCTAAACAGCAGGGGGCATCATCCCAACAGCAGCCTTCATCTCATCCTTCTGACCAGAACCACCAAGCAGCCTCCAAAGCAACACAACCTGGCCAgccgcagcagcagcctccAGCTCAACCAGTACAACCTCAGCAGCCAGCCCAAGGGTCTAAACCAGCCAGCCTCCCTCAGGATGGCCCTCCATCAGGGGGCATGGACTCAAAGAGCCTCCCCAGTAATAGCCCCCAGGATGGTGCCGGATCACATGATGGTAGTAATCCTGCAGGGACGCCAGGCGGCCAGCTTCCCAACCAGCCTCCAAGTGCTGGCCCTCCGCAGGGCTTCCCTTCCCTTGACCTGCCCAAAGGAGCAGATGTTAAACTGACAGCCCAGCACCAGCAACAGTTAGCTCATGAGATCATGAGCATGGGGGACAACCCAGAGGGTCTTTCACAGGAGCAGTTAGAACACAGAGAGCGCTCTCTACAGACTTTGCGTGATATCCAACGAATGCTGTTCCCAGACGACAAAGAAATGGCAGCAATGGGCCAAGGGAACATGGTTGGACCTCCTCCCAATGCTGCCATGATGGAAGGTGGGCCCAAGAAACCTGAACAAGGGCCACTTCAGGCTATGATGGCTCAGTCCCAAAGTCTGGGAAAAACTGGTGGTCCAGGGGGTCCACGTCCAGATGGCCCTCCCTTTGGGCCACCTGGACCGAGGGACATGCCTTTCTCCCCTGATGACCTTGGGCCCCCTCCTCAAGGTCCAGGACCCATGAATTCGCATCCAGGACCTGGCGGAGAGCATGGTGACCACATGACACCAGAGCAGATCGCTTGGCTAAAGCTACAGCAGGAGTTCTATGAGGAGAAGAAGCGTAAGCAAGAACAAATGCAGCACAGACCAATGGGAGATATGATGATGCACCAGGCTGGCCCAAGGGGCATGATGCGGGGGCCACCACCTCCCTACCAAATGAATCCTGGTGAAATGTGGGGTCCTGGAGGTCCGGAGCCTTTTCCTGAGCAAATGAACATGGGCCCCAGAGGAATGCACCCACACATGCAAAGAATGCCTGGCTTCCCTGGAATGATGAACCCAGAAATGGAGGGAGGACCTAACGCCATGCCCAGGCCTGGCATGAACTGGCCTGATGATATGCCCAAGATGGGGGATGCAAGGGGTTTTCCACCAGGTCAAGGGATGTTTGGAGGGCGAGTGGAGAGGTTTCCCAATCCTCAGTCTGTACAAGAAGCCATGTTCCATCAAGGCATAGGTGATAAGCAAGGTATGGGTCTACCAACCATGATGATGGAAATGAACAGGATGATGGGCAACCAAAGACCAATGGAGCCTGGGAATGGGGGTGGCATGATGTTTCCCAGAATACCAGGTGAAGGTCCCATGAGCCCTTCCTCAAGAATGGAATTTGTAAAAGGGCTAGGGCGTGACATGGGTGAGTTTGGGATGGGACCTGGTAACCTCAATGTCAATATGGGCCCCAGTCCTCAAATGATGCCCTCCAAGATGAGAGAGCCAACAATGAACCTGAGTCCAGAAgagatgatgaagatgaggCAAGGTGGAGGTCCCATGCCTGAGAGCATGGGCCCACAACCCAAGATGATGCAGGGGCCTCCCTTCTCTGACCAGCCCCACCCAGGTGACTTCAATATGGGTCCCAACCGACAGTTTCCAGGCATGGGTCCTCAAGGGCCTGGAAATCAGAGGGTTCCCAGAGGCGAACCACCCTTTCCCCCTGAACAGCGAGGAGGCAACATGGGTGGCAATGGTCGCCTGAGCCACATGCCACCTTTACCTCCCAATCAACCTACGAATAACTCAGGTCCTCCGCCAAACCAGAGGAATATGGGTCGCAAACCTTCAGACCTGAGCGTCCAGTCCGGCCCGGCAAATTCACCCAACGTCAACCCACTCAAGTCTCCCACGCTGCGGCAGGTTCAGTCGCCCATGTTAGGCTCACCCTCTGGTAACCTCAAGTCTCCACAGACGCCCTCCCAGCTAGCTGGCATGCTCAGTGGGCCctcagcagtggcagcagctgCAGCGGCCGCAGCTGCATCAATCAAGTCTCCGCCAATGATGGGTTCAGCAGGGGCATCACCCGTCCATATGAAGTCACCCTCACTTCCTGCCCCTTCCCCTAGTTGGACATCATCGCCCAAGCCGCCCATGCAGAGTCCAGGGATTCCTCAAAACAACAAACCTCCGCTCAGCATGACCTCGCCAAATATGATGGGCAACGTGGAGCAAGGTGGAAATGGTCCTCCTTCCGCACCTCCTTCCAGTAGTTCTACAAACCAGCCCAGCTCCATCAACGTTCCGGGAAGTCTTCCGTCCAGCAGCCCCTACACTATGCCCCCGGAACCAACGCTATCCCAGAACCCTCTCTCTATCATGATGTCACGCATGTCCAAGTTTGCCATGCCTAGCTCCACGCCTCTCTATCATGATGCCATCAAAACCGTGGCCAGCTCAGATGATGATTCGCCACCTGCACGTTCGCCAAACCTGCCATCCATGAACAATAGCATGCCTGGAATGGGGGTGAACCATCATCCAGGCCATCCGCGTATGATGACTCCCAACTCTGCAGGCCCCATGCCTTCGCTCAGCCCCATGGGTATGAACGCTATGGGCTCCCAGCCTCTTTCCCATGGCATGCCTAACCAGATGCCCTCACCCAATCCTATGGGCCCTAACATGCCTCCACACTCCGGCCCCATGGGTCCTGGCATGATGTCCCACGGCATGATGATGCCTCCCGTCTCCCAAGACCCAGGCATGGCCGGCAACCAGATGATGCCCCAAGGTCGCATGGGTCTCCCTCATCGAGGACAGGGCTTCCCTCCAGGGCAATCTCCTCCACAGCAGGTGCCCTTTCCGCACAATGGTCCCGGACCCCAAGGTGGCTTCCCACACGGGATGGGCTTCCAAGGAGAGGGTGGTCCGATGGGAAGGATGGGTAACATGCCGCACGGACCCGGCGGTGAGCCAGGAATGTGCAAGCCTAACACACCCGGTGGCCAGGAGTTCAACAACATGCCAGGTGTCTTCAATGACTCGGATCTGCACGAGGTGATGCGGCCGGGCGCCTCGGGTATCCCCGAGTTTGACCTCTCGCGCATCATACCTTCAGAGAAGCCTAGCCAGACTCTGTCGTACTTCCCCCGCGGTGGAGAGGCGCCTGGTGGCAAGCCTCCTCACCCTTCAGGCCCACCCGGATTCCCCCCCATGCAGGGGATGATGGGTGAGGGCAACCCCAGGATGGGTCTCCCCATGCAGGGCATGGGAGGCCCCCCTGGTCCTGGCCACATGGGGCCCCAGGACATGCCCATGGGTAATGCTGGACACAACCCCATGAGGCCCCCAGGCTTCATGGGACAGGGCATGATGGGTCCTCAGCACAGGATGTTGTCACCTGGCCAACAGCCAGGCATGATGGGAGGCCCCGGGATGATGCAGGGCAAAGAGAGGCCCATGTACAACCATCCCGGCCCGGTGGGCTCCCCCAACATGATGTCACTACAAGGGATGGGTGGTCCTCAGCAGACTATGATGATGCCTCCTCAGATGAGGCCTCGGGGCATGTCAGCAGACATGGGGATGGGCTTTAACCCTGGCCCAGGGAATCCTGGGAATATAATGTTCTGAGCTGCTACAAGTAACCGTCGAGCCTCCACCGCAATTTACCGAACAATCCGGATACTGCATAACctgtgaaaataaataaggactttttttataaaaggaaacaaaacaaaagagctACATGTGGTTGTGTGTTCATGTTTCAAGACAGTGTGTGGGAGAACTGGGGCACTTGTTGCTCGAGCACACCTAGGTAGGACAAGGCTTCAGTGGCCTTGAGTGAGTTCTGGATTtacacagagacacaaacaaacaaacccacACCCAAAAAAACGGACACCTGGATGTATACCGAGGGATTCCTCATCTTTAGAAAAGTCTTTTTGCAGGTGAAGAGCTACAAGGGACGAGGGGATTTACAATAATGTGCCCCCCTCTTCCTCCTCGCCGTTTGGTCCAGTTTCAGCTCCGTTTGGAACATCAGGAATGTATTCGGATTCAGAGAGACAGACTCGGACTCAGAGTAAGGTCTTTTTAGCCTGATCTTGTGTGACCGTAAGTCCATGTGTGGTCACAAAGCCAACAACAGCAAACCAAGCAAATGGACAACTTGACTTTACCTGACCCGACCTTACCTGAAAGTAGCGGTTTATTGTTgtacttttatataaaaacaaaaaaaaaaaacagaaaaaatcaaACGGAGGGAGATAACCGAGTAAAAATGGTTGGAGACAAAACACAAACTGAACgacgaaaaaaagaaaaagtcaagAAACATTTTGTCACAAGTTGCACCGTCTTGGCTGTATGTTTACATCTCATCGCATCACTTCCCTCCGAGTCATGAAATGCTCTTTGTATGTGTGTACTGTACTTGTGTTGTTAAAGGGATTTTACCAGTGACTTCtataggtttttttttccatcttcaTTTGTAAAGGGGGAGGGTTGGGGGTGGCTGTTGGTGGTCGTCGATACGGtgcgacaaaaaaaaaacgccacCACAAAAATACTGTGTACCGCGGGGGCGTacagaatattttaaatttaatttcctTTGCTACTCCCATGTATGATAAAACCAAACTAAGACCTCATACAGATCAtagtattattaaaaatcaaGCACAAACAAGAATTAACTGTAAAGAATaagaagtgttttttgttttttttggttctttctttaatctttctttttttttaattgtagagAAAAACACTTCGACAACAGTCAGTAGGAGCGGAAATCTGATGCGTGCCGTCGGCTggtgttacagtttttattttatattttttcgtCCGTAAGCTGGAACACGGGGTACAGGAGTTTGCAGTGGGGGTAACTCCAGATCACACCATGATGCACCGTGATGATGTACCATGGTGTAAACTGCCAGAGTCGCGGTGCCTCTCAAAGACCGCAAGCATATAACATTCTTGGGGAGGGGAACACAGAGGGGGAATCAAACATTACAATAACTCTAGCCGACGGCTATGCAGAGCAGCGCTGGATTACTGATGggtggcaattttttttttcttttcttttgtagaAAACAAATGATGAAAAACGACAGAAAAAGCTAATAGGTTGTCCTCATGTCCCCAGCCCTCCTGTGTTGATGCTTGTCATGTGTAACTCCATTGAATTTGGTACTGAACCACTTCCTAAGGCTGGGCTGTGGTGTTGgaagacaaataaaatatattgtttggtATAAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139117 lncRNA upstream 46287 12483622 ~ 12522292 (+) False cryzl1
TU139094 lncRNA upstream 145762 12416419 ~ 12422817 (+) True G102917
TU139092 lncRNA upstream 153606 12414166 ~ 12414973 (+) True G102916
TU139055 lncRNA upstream 166325 12379091 ~ 12402254 (+) True G102902
TU139054 lncRNA upstream 185946 12379091 ~ 12382633 (+) False G102902
TU139295 lncRNA downstream 34019 12767216 ~ 12783303 (+) True G103067
TU139296 lncRNA downstream 42057 12775254 ~ 12782304 (+) True G103068
TU139294 lncRNA downstream 42880 12776077 ~ 12783303 (+) False G103067
XR_002650548.1 lncRNA downstream 48402 12781599 ~ 12783058 (+) True LOC111193478
TU139318 lncRNA downstream 84061 12817258 ~ 12817489 (+) True G103086
XM_007251348.3 mRNA upstream 7468 12546336 ~ 12561111 (+) True LOC103025394
XM_022674726.1 mRNA upstream 8048 12546334 ~ 12560531 (+) False LOC103025394
XM_007251347.3 mRNA upstream 29013 12535280 ~ 12539566 (+) True cbr1
XM_007251339.2 mRNA upstream 46276 12511717 ~ 12522303 (+) True cryzl1
XM_007251340.2 mRNA upstream 46276 12511717 ~ 12522303 (+) False cryzl1
XM_022674728.1 mRNA downstream 29069 12762266 ~ 12767170 (+) True LOC103027506
XM_007251357.3 mRNA downstream 52561 12785758 ~ 12815661 (+) True LOC103028151
XM_007251358.3 mRNA downstream 84989 12818186 ~ 12833144 (+) True LOC103028459
XM_007251363.3 mRNA downstream 103962 12837159 ~ 12846645 (+) True stn1
XM_022674730.1 mRNA downstream 117804 12851001 ~ 13032506 (+) True sh3pxd2a
TU138581 other upstream 1273764 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 2042419 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3734648 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3849344 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5422239 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1195868 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1527428 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 1885438 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 1957846 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 3717978 16451175 ~ 16458209 (+) True G104000

Expression Profile