RNA id: XM_007251357.3


Basic Information

Item Value
RNA id XM_007251357.3
length 2022
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC103028151
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12785758 ~ 12815661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTCAAaatctccacacacactccttctctcacacacactctcacataaaggCACGCGCATACCTCCACTCTCCCTCAGCGGTGGAAAACCCTTAGTTTAACCGGCTAAAGATGTTGCTGAGCCTCTCTCTGCTCGCCTTGCTCGCTCTCTCCAGCTGTCAGGCGGAGGAGGTGAAGAGTAAGAGTAAGGTCTGTGCAAATGTGTTCTGTGGAGCAGGACGTGAGTGTGCAGTGACAGAGAAAGGAGAACCCACCTGCATGTGTATTGAGCAATGTAAGCCCCATAAGCGTTCAGTGTGTGGCAGTAATGGGAAGACTTACCGCAACCACTGTGAACTTCACCGAGATGCCTGTCTCACCGGACTCAAAATCCAGGTGGCTCATGATGGGCTCTGTGAAGaaagaaagacagacaaggTCGCTGCCAGCCCAATTGTGTGTTATCTGGCGGATCGTAATGAGTTGAGGAGTCGTGTGATCGAGTGGCTGCAGACCGAGGTGGTTCCTGATGGCTGGTTCGCCAAAGGCTCCAACTATTCTGACATCCTTCTCAAATACTTCCAGAACTATGATAATGGAGATGCAAAGCTCGACTCCACAGAGCTCCTAAAGTTCATCCAGCACAACGAAACAGCCGTCAACATGACCTCATACGTGGACGAGGAGAACAACCGCCTGCTGAGGAGTCTGTGTGTGGATGCCCTGATCGAGCTCTCAGATGAAAATGCTGATTGGAAACTGAGCTTTGATGAGTTTCTGAACTGCCTCAAGCCTGGCTTCAACCCTCCAGAGAAGAAATGTGCTCTGGAGGACGAGACATACGAGGACGGTGCTGAGACGCAGGTGGAGTGTAACCGCTGTGTCTGTGCCTGTGGGAACTGGGTGTGCACCGCAGTGACCTGTGATGGTTCAGAGAATTCGCCTGCTGAGGAGGAAACAGAGGGAGTAGATCAGGAGATGACGGAGGAAGAGTGGAGCCGCAGAGTGGCTGAGCTTAACAAACATCAGGAAACTGTGGAGAAGATGAAAGTGAGCACTAAGGAGGTTTAAGAAGTGAGagatgatccaaaacacacaaaagaggACAAGATTGAATGTATCTAGTCCTTCAGTTTGTTACAGTCCACTGTAGTGACTGGATTTGTACTGTCCACCAGCAACGGAGTGGTCtttctatatattattttctatcattgttttaattattctgAATTTCAGTTAGAactgttttaatatttcagtgttttgatatttgatatttttaatgtgGAGACTGTGTGAATGGCCTACTGTCTGTTTACGTTTTGCCTTTTATACTATGTTGGATGTTTTCCTCGTGAGGCTCAACATTAGTGGGATGTTTGGGTGAACTTTTGGTTGTACTTGAACTGATGGCTTTCAGCCAACAATGCACAGTGCTGATGTAGACCAAACTTTAACACCTTATCAGAGGACAGgtaatattgtgtgtgttttttaaacccCTGCCATCAATGTAACACTAATAAATCACAGAACAAACATTTAGGCCAGGCTTAACTTCATaggaaatttaaatatttgccTTAAGACCCCATTATTTAATCTACAAATGAACTAAGCCATATATCTTATCAGAAGATAGTAGCCCACATCACATTTGATTTAAAGGATCTGTagaatattttgaaaaaaaatgtaaggcaGTATTCTTAAATACAAACTTGAAATTTGTTATAATTCATAATTAGTTCattaatttttccagagttcCAGACTAGCCCTTGAACTACATGCATCAATCTTCAGTTCTGGTTTCTGATCAAGCCTTACCCACATCTTTTACAAACTCTGTTAAGTGCCAGTAATTCTCTAGgtacacatacactacactgtTCATATGTactgttattttactgcatttctCTCATATTTAAGTGAACTGTGTAGTCTGCATTTCGCTAACACCCTACAGTTGTCTTACAGCACATCTGGCATACTCGTGCCAATAAAAtgagtactgtattaaaaacacagagCGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23912 FSTL1; follistatin-related protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139295 lncRNA upstream 2455 12767216 ~ 12783303 (+) True G103067
TU139294 lncRNA upstream 2455 12776077 ~ 12783303 (+) False G103067
XR_002650548.1 lncRNA upstream 2700 12781599 ~ 12783058 (+) True LOC111193478
TU139296 lncRNA upstream 3454 12775254 ~ 12782304 (+) True G103068
TU139239 lncRNA upstream 45590 12626199 ~ 12740168 (+) True G103023
TU139318 lncRNA downstream 1597 12817258 ~ 12817489 (+) True G103086
TU139336 lncRNA downstream 203187 13018848 ~ 13019168 (+) True G103102
TU139325 lncRNA downstream 211520 13027181 ~ 13032456 (+) False sh3pxd2a
TU139368 lncRNA downstream 218570 13034231 ~ 13034919 (+) True G103130
TU139371 lncRNA downstream 224979 13040640 ~ 13045883 (+) True G103133
XM_022674728.1 mRNA upstream 18588 12762266 ~ 12767170 (+) True LOC103027506
XM_007251350.3 mRNA upstream 52561 12568579 ~ 12733197 (+) False bcl9
XM_007251349.3 mRNA upstream 52561 12660253 ~ 12733197 (+) True bcl9
XM_007251353.3 mRNA upstream 52561 12660253 ~ 12733197 (+) False bcl9
XM_022674727.1 mRNA upstream 52561 12662101 ~ 12733197 (+) False bcl9
XM_007251358.3 mRNA downstream 2525 12818186 ~ 12833144 (+) True LOC103028459
XM_007251363.3 mRNA downstream 21498 12837159 ~ 12846645 (+) True stn1
XM_022674730.1 mRNA downstream 35340 12851001 ~ 13032506 (+) True sh3pxd2a
XM_007251359.3 mRNA downstream 35340 12851001 ~ 13032506 (+) False sh3pxd2a
XM_022674732.1 mRNA downstream 35340 12851001 ~ 13032506 (+) False sh3pxd2a
TU138581 other upstream 1490943 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 2259598 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3951827 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 4066523 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5639418 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1113404 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1444964 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 1802974 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 1875382 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 3635514 16451175 ~ 16458209 (+) True G104000

Expression Profile