RNA id: XM_007254800.3


Basic Information

Item Value
RNA id XM_007254800.3
length 2553
RNA type mRNA
GC content 0.55
exon number 10
gene id mid1
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18642708 ~ 18742642 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGGGCCGAGCCAGCCAGAGGCGGACTGATGGACTGGTCCGCTGTTCCTGAGCTGTTCTCAGCAAGGGAAGGAGGAGTGGCTGCATGGAAAAGCGAGCCTCTACAGACAATGACACAGGCAGACTCCAACGTGCTCCCTCTCCAACTTCTCTGAGCGCTGTGTGGAGAGTGGATAAGAGCAGCCGGAGCTCGGAACGCCAGGGAAAACGCTGAGTCGTTCTTCACCTTTCCTCCCCCTTTCGCTGTGTGTGTGGACGATGGAATTTTAACCATGTGGAAGATAGCTGCCTGGCTTCCCTGGATTTCGCTGACGCCCTCCCCGCTTCGCTCCGCCTGAAAGGATGGACGCACTGGAGTCGGAGCTGACCTGCCCAATCTGCCTGGAGCTCTTCGAGGACCCGCTGCTGCTACCCTGTGCCCACAGCCTGTGTTTCAACTGCGCCCGGCGCATCCTGCTTTCTCACTGTGCCTCCAGCGAGCCCGTCGAGTCAATAGGTGCCTTCCAGTGCCCGACCTGCCGCTATGTCATCGCCCTGAGCCCACAGCGCGGCCTGGACGGACTCAAGCGCAACGTCACCCTTCAGAACATCATCGACCGCGTCCAGAGGGCGTCGTCCGCCACCACGCTGCTTCTGCCCACCAGTGGGCCCAACTCGCCGAGTGACGAGGGGCGTCCTCCGCCTTCTTCTCTTGCCGCCATGACCACCACTCCTTCCCCCGAGCTGGTGCAGTGCCAGTTCTGCGAGCAGGACCCGCCGCAGGACGCCGTGAAGACTTGTGTCACCTGCGAGGTGTCGTACTGCGAGGAGTGCTTGCGCGCCACCCACCCCAACAAGAAGCCCTTTACAGGGCATCGGCTCATCGAGCCCCTGCCCGACTCGCACCTCCGCGGGCTGCAGTGCCTGGAGCACGAGGAGGAGAAAGTGAACATGTACTGCGTGACTGATGAGCAGCTCATTTGTTCCCTTTGCAAGCTGGTGGGCCGCCACCGCGACCATCAAGTGGCGGCGCTGAGTGAACGATACGAGAAACTGAAGcaaaCATTGGACTGTAACCTCAGTAGTCTGATCAAGAGGAACAACGAGCTGGAATCTCTGATGGGGAAACTCATTCAAACCTGCCAGCATGTGGAGaTGAATGCATCACGGCAGGAAGGAAAGCTCATGGATGAGTGTGATCTTTTGATCAATATTATCCAGGAGCGGAGACAGATCATCGGTGCTAAAATCAAAGAGGGCAAGACGGTCCGACTGCGCAAACTGGCGCAACAGATCGCTAATTGCAAGCAGTGCATAGAGCGCTCCTCGGCTCTTATAACTCAGGCAGATCAGACCCTCAAAGAGTCCGACCACGCCCGATTCCTCCAGACCGCCAAGAGCATCTCAGAACGGGTCTCCATGGCAACAGCATCCTCTCAGGTCCTGATCCCGGAGATTAATCTGACAGACACTTTCGACACCTTCGCACTGGACTTTACCAGAGAGAAGAAAATGCTGGAAAGTCTTGATTACCTCACAGCACCTAGTCCCCCTGGCATCCGAGAGGAGCTGTGCACCGCCTCCTACGACACCATTACTGTGCACTGGACATCCGATGATGAGTTCTCTGTGGTTTCCTATGAGCTTCAGTATGCCATCTTCACTGGACAGTCCAATATTGTCAGTCTCTGTAACTCCGCTGATAGCTGGATGATCGTCCCCAACATCAAGCAGAACCACTACACGGTCCATGGCTTACAGAGTGGTACCAAGTACATCTTCATTGTCAAAGCCATCAACCAAGCAGGAAGTCGCAGCAGTGAGCCTGGAACACTGAAGACCAACAGTCAACCATTCAAGCTCGACCCAAAGTCTGCTCACAGGAAGCTAAAAGTGTCACATGACAATCTGACAGTGGAGCGTGACGAGACATCTTCTAAGAAGAGCCACGGTCAGGAGCGCTTCAGCAGCCAGAGCAGCTATGGAGTCACTGGGAACGTGTACATTGACAGCGGCCGCCACTATTGGGAGGCCCTTATTGGAGGAAGCACTTGGTACGCAGTGGGTATCGCCTGCAAGACTGCACCCAAGCATGAATGGATTGGGAAGAATCCTTCCTCGTGGGTGCTCTGCCGCTGTAACAATTCCTGGGTTGTGCGCCATAACAGCAAGGAGATGGCCATCGAGCCCTCCCCCCATTTGAGACGTGTTGGAGTGCTCTTGGACTACGATGCCGGCTCGCTGGCTTTCTACGATGCCGTGGGATCTCAGCACCTTCATACCTTCCATGTTACCTTTACCCAGCCAGTCTGCCCAGTCTTCAACGTATGGAACAAGTGTCTCACAGTCCTAACTGGCCTCCCCATTCCAGACCATCTGGAAGGCGTGGAGCTTGACTGAAATGAGATGAACAGGAAAGTGGACTCAATCTTGAGCTGCTGACAGTTGTTTTCACCAGCTCTGACTATGTTAAGCTATTCCAAGTTCCTCTTCCTATGCACCCTGGACCTGGATCTCATGGCCACTTCCCCTCCTTTtctttaaactgaaataaatgagaGTATTTTTTGAGAA

Function

GO: NA

KEGG:

id description
K08285 TRIM18, MID1; midline 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141286 lncRNA upstream 33262 18648215 ~ 18649075 (+) True G104588
TU141196 lncRNA upstream 108803 18569451 ~ 18573534 (+) True G104504
TU141195 lncRNA upstream 108950 18569451 ~ 18573387 (+) False G104504
TU141228 lncRNA upstream 171695 18447789 ~ 18510642 (+) True G104534
TU141188 lncRNA upstream 234231 18362032 ~ 18448106 (+) True G104499
TU141371 lncRNA downstream 187393 18930035 ~ 18930393 (+) True G104658
TU141374 lncRNA downstream 198456 18941098 ~ 18956053 (+) True G104660
TU141384 lncRNA downstream 255893 18998535 ~ 19026586 (+) True G104667
TU141381 lncRNA downstream 284510 19027152 ~ 19029365 (+) True G104666
TU141400 lncRNA downstream 288375 19031017 ~ 19031311 (+) True G104680
XM_022674818.1 mRNA upstream 115623 18404506 ~ 18566714 (+) False arhgap6
XM_022674817.1 mRNA upstream 115623 18404507 ~ 18566714 (+) True arhgap6
XM_022674819.1 mRNA upstream 115623 18479079 ~ 18566714 (+) False arhgap6
XM_022674388.1 mRNA upstream 345075 18336145 ~ 18337262 (+) True LOC111193482
XM_022674813.1 mRNA upstream 467465 18192698 ~ 18214872 (+) True LOC103032036
XM_007254803.3 mRNA downstream 46881 18789523 ~ 18808162 (+) True LOC103031642
XM_022674823.1 mRNA downstream 84637 18827279 ~ 18858363 (+) False LOC103031957
XM_022674822.1 mRNA downstream 94680 18837322 ~ 18858363 (+) True LOC103031957
XM_022674821.1 mRNA downstream 98331 18840973 ~ 18858363 (+) False LOC103031957
XM_015607257.2 mRNA downstream 105443 18848085 ~ 18858363 (+) False LOC103031957
TU140760 other upstream 1555027 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1788614 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2174560 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2224128 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3990138 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 176418 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 2246631 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2276396 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2584550 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4067437 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile