RNA id: XM_007254805.3


Basic Information

Item Value
RNA id XM_007254805.3
length 1895
RNA type mRNA
GC content 0.44
exon number 13
gene id sugt1
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18860729 ~ 18895531 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCCACAGTTGGGAGTTTGACAGTCCTGATGTTTACATGGCGCTAAGCAGCAGCGAGGAGGGCCTTTCGGTTTCACTCAGAACTTTCTAGACCTTCTTCTTCACCCACGAGAACGGCGGACTCATGGCCAGCGACAGGAGTTTTACTGACAGTTTCATAGACGAGGACCCGAAGCGAGCTCTGCAGGAGCTGAATGTGGCTTTGGGAGATACAGCTGACAATGCAGAATGGCTCTGTCAGCGATCTTATGCACACATTCTGGTCCAGGACTATAACAgAGCAGTCGATGATGCTAAGAAAGCACAGCAGCTTCAGCCTGGTATGGCCACTGCCTTCCTGAGAAAAGGAATCGCAGAATATCATCTCAACAACATCAGTGAGGCTCAGCAGACCTTTACAGCAGGAAAGGCACTTGATGATTCCAATGAGGCTTTTGTAACGTGGATGAAGCTCTGCGAAGAGAAAATGACACAAAGACAAAATGGAACCGCAACTTCGCAGCAAACTGCAGCAGCTCCACATGTCAAACATGACTGGTACCAGACAGAATCGCAAGTCACTGTCACCATCATGGTGAAGAATGCCAAGAAGGAGGATGTTGCTGTCACCTTTGGAGAAAAAGAGTTGAGAGCGGAAATGAAGCTTCCATCTGGAGAGGATTACTGCCTACATATCCACCTTCTACACCCTGTGGTTCCTGAGCAGAGCACTTTAAAGATCCTCTCCACTAAGgtcGAGATTAAGATGAAGAAGACGGAAGCAATCCGGTGGGAGAAGCTGGAGGGGGAAGGCACCCTACCCAGCGTCAAGCACTTCGCTCCCTCCCCGAACCAGTACCCATCATCCTCCCACTATACCCGCAACTGGGACAAGTTGGTGGGCGATATtaaggaggaagagaagagcGAGAAGCAGGAGGGAGATGCCGCACTGAACTCGCTGTTCCAGCAGATCTACTCAGATGGCTCTGATGAGGTCAAGAGGGCCATGAACAAGTCTTTCATGGAATCTGGAGGCACAGTTCTCAGCACCAACTGGTTAGATGTTGGCAAACGGAAAGTAGACGTGAATCCTCCAGATGACATGGAGTGGAAGCAATATTAATTGGACGGTGAATTCGACGTTGAGTGCTGCGCCAGTCTTCACCACATTGGCCCTGACCTTTCCTCcattctttcttgttttctttctttttttttatatttggccAGTCTCTTGGACCCACATGTAATGTTGGAATAACAACTCAGTTTAAGTAGGTTTCAGTTTCCATTGGCAATTGTTTGTTGTTCATAATTAGGTTTTCCGTGTCAAAGAGTCCATTTTAAATGGAAAGTTCCCACAAGCCACTGGACCTAGACTTCTCTTCATCTGTGTCTGGGAACCTGCCCATTAATGTTTTAGAAACACCACACATGCTCTTTTTCTCGTATTGTTTTGGCATGTTTCAACACTTAAAGTGTGGGTGCTGGCTGAATAAATTGTCAACATTTTGAACATCTCTCtcctacacaaaaaaaaataatcttggGTCATTATTCAAAATTTTGTTCAGTGATCAAGAGCCACAACATTACTCGTTTTCACTTTTCAAGCACTTGTGCCTCAAGATATATTTAGCCATTTTTATGATGTACTTAAAGGGGTCATGCTTTACTGAATACAATTACAGacacattgtaaataaattttTCTTGCTCAAAGtgactttcctatttttttccgTATTCATGGTGATTTAGGACAGAAACATCTTCCACAGGTATTTTCTTTGAAAAGCTGGGCATGAGTGATGCAAggcttaaagtggcagtccgtattattttgtttctaaactgaaagtaaaagatgTTTTTCTGAGTAGAGAAGGaataaaaaactgtgtttaatggta

Function

GO: NA

KEGG:

id description
K12795 SUGT1, SGT1; suppressor of G2 allele of SKP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141286 lncRNA upstream 211655 18648215 ~ 18649075 (+) True G104588
TU141196 lncRNA upstream 287196 18569451 ~ 18573534 (+) True G104504
TU141195 lncRNA upstream 287343 18569451 ~ 18573387 (+) False G104504
TU141228 lncRNA upstream 350088 18447789 ~ 18510642 (+) True G104534
TU141192 lncRNA upstream 466664 18384875 ~ 18394066 (+) True G104502
TU141371 lncRNA downstream 34504 18930035 ~ 18930393 (+) True G104658
TU141374 lncRNA downstream 45567 18941098 ~ 18956053 (+) True G104660
TU141384 lncRNA downstream 103004 18998535 ~ 19026586 (+) True G104667
TU141381 lncRNA downstream 131621 19027152 ~ 19029365 (+) True G104666
TU141400 lncRNA downstream 135486 19031017 ~ 19031311 (+) True G104680
XM_022674823.1 mRNA upstream 2367 18827279 ~ 18858363 (+) False LOC103031957
XM_022674822.1 mRNA upstream 2367 18837322 ~ 18858363 (+) True LOC103031957
XM_022674821.1 mRNA upstream 2367 18840973 ~ 18858363 (+) False LOC103031957
XM_015607257.2 mRNA upstream 2367 18848085 ~ 18858363 (+) False LOC103031957
XM_007254803.3 mRNA upstream 52568 18789523 ~ 18808162 (+) True LOC103031642
XM_007254869.3 mRNA downstream 113035 19008566 ~ 19012966 (+) True LOC103024565
XM_007254808.3 mRNA downstream 118875 19014406 ~ 19022921 (+) True LOC103033226
XM_022674828.1 mRNA downstream 137874 19033405 ~ 19050916 (+) True LOC103024880
XM_022674826.1 mRNA downstream 137892 19033423 ~ 19050916 (+) False LOC103024880
XM_022674827.1 mRNA downstream 137892 19033423 ~ 19050916 (+) False LOC103024880
TU140760 other upstream 1733420 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1967007 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2352953 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2402521 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 4168531 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 23529 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 2093742 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2123507 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2431661 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3914548 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile