RNA id: XM_007254808.3



Basic Information


Item Value
RNA id XM_007254808.3
length 2963
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC103033226
representative True

Chromosome Information


Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19014406 ~ 19022921 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AGAGGGTACTGTGTAAGTATAATCAAGCACAGACTTGTTCAAGGAAAACAGTACAGAGTTGACTGTTGAGAGTCAGAAGTTTATTATCTGCTTTTATTTGGGTTTAAGACACTGGAGGTGTTATTTACAGTGCGGGTTACAGCGCTAACAGACCCTGACTGACTGTAGCTgagctgtttttactgtttgtcaggagatttttactttattacctCAGactgagagaagagaaaagaggaaaagtgTAGAGATGGTTCATGAGGAGCTGTTCGCTCGTCTGAATGAAGCCGGCTATAAGAACTGGTTGAAAGCAGGGTACTGTCTGCTGAAGGTGAGGGACGGGCTGTGCGGATATGCGGACACTGAAATGCTGAATTTTCACCGATCTGTGATCAGAAACAACCGCAACTTACAGAGAGAACAGCAGTGCAGGAGCAGCTGCAGACCCAGAGGAACACAGTTTCAGCCGGCTTGTTCCATCTGTACTGAGTGGCAGAGGGAAATCTTAAGGCACCACACAAATCCTTTTGGTATGATTAACTGGGGAAACTGCAGACCCTGGCTGTGGCCCACGGAACCTTGGGAAGTGGCAAAGGCTTTCATGCCACGGGGACTAGCCGATAAAAACAAAGCAGAGCAGTGTGATGCTGCAGCACTTCTTAATCTCCTTAATTTCTGTGACCACTTCAGCTTCATCAACCAGAGCCTGGTTATTGAGgTGATTCGCTGTAGGAATCACCTCATGCACTCCTGTGAGATGCTGGTCTCAGATCAGTGGATGTCCCACTTTCAGAAAAGTCTACAGCAGCTGCTACTACAACTACGCCATGTTCCCGAAGTGGTTGCAGCAGGCCAACAGATCGAGGAGATGCTGTCTGTTGATCTGTCTGTGCATGTGCCTGGGGTCGAGCATGTGGATGGACCCCAAATGGATGGAGCAGAATTAGATGGAGTAGAGATTGAATCTATCAGCCACTGGGAGACAGAACTGCTTAAGGAAAGTCTGAAAGACCTGTTATACACTGATGAACTCGATGGGAGACTCATACCTGCGgATCTGAAGAAAGTGCAGAGCCTGCATAGATTTTTAAGATCCCACAAGGACCTGGAGGAGCAGTTCAGAACAGAACTTCAGAGTGTGCAGGTGTTGGAGGAAGAGCTGCAGAGTAGCATAAATATGGAACAGTGATTGCActattcaaattatattttgggtatatttgtaaaatgtttgttttcttttttgcataaATTGTCAGATGTTTGCATGTTCTTTGATTTAAACTGTCATGTTTACTCACCAGccaaaaacatctttatattcAGACTAAGctgtaaaaaacagtttttaattcCGTTTTGGTATGACCGGTGTTAGGGGCCACAAAAAGTAAAATAGACTTTAAGAttgcaaatatttaaaatggctaatattttaataattactttAGTAATATTTTGGGAATACACTCCTGTTCCACTTTATGCCTTCAAATATATAAGCTCTATAACCTTGTGGtaaaacaaacaggaaaatatgtattgtaatatgtaatatgtttcTTTGTATTAAGAAACTccttcatttctcattttgtccGTTATTTCTCCTACAGTCCCTAAAGTGCTGCTTGGCCCTGAAGATGCAGCAGGATTGTACACCAATCTTAGTCAAATATAATCTAATGCtaggttcacattacaagccacattgatcaaattcgattttttttctcagatcgGATTTGTCTATCTTGACAATTCACAAACataagtgagctgtatctgtgtggaatgtgaacaaatctgtccctacTACAtttcacatgcgcacattgatacatgTATAAACTTCActttcttcaccaacaacaaaaaaaaacatcatatttgagagacgactcgtagctttataaagggaaatggatgctttagcagctcatatgtggagcatcttttgctggagtggagagaaacagcagacagctggtctgaagtacatgttcaggtcgaggaggagaaaaaaggacaggctgtttgcttttgctgtttttgcagccttagctgcacagctgcagcaAGAGATGTGTGATgtgtacgagagagaagcacgtagcaaataaattctgatttgaccgttcatgtcgcatgtccatggatcagatatgtatccgatttaagaccacatatgaaagtgacacatatgaaagtggcacgttcacacagccaagaaaaaaaatggtctgAGTCACAAATaagatttaagtcacttcaacctggtaatgtgaatgtagcctaaaagataagtacaataaaaaaatattttgaaaaagaTCGTCATCAAATTGGTTGGTTTTTCATCACTTGAAAGAAAAAGCTGCaataatattttctattttttcagatattttatttctatatataaaattgttttttttgtattgcatATCGGATTGCATGTAATTTATAAATGTTAGCATGTTCCTTGATCTTCAAAGTTTTGATCCATTTTGTAAACTGCTACATTTACTCACCAGCCTGTACAGTCTTTATATGCATGGCTAAGCTATAAAAAACAACCAGTTTTTAAtagatttagggtgtgttttaGGGACTTTGAGaataaatagagaaatagagaataTTTTGCAAATACAGacataaaatgacaatattaaagTTGTATAGCTACCAGGACAAATCACAATATTGTGATCATAGGGTTAACAGAAGACATCAACAGCagtttgtgaataaaataagaatGCTGAAATGGTTGTCTTACTTTTTCCTGTTTAACCACATGCCGTCTTTAACTGGCACAAatctacagtgctgtgaaaaagtctTTGTCCctacatgatttatttttttgcatgtttgtctttCTTAAATGATTTAGATTGGACAAAGTTAAATATTagtcccttaaaaataaaatccatttgcatttaaaaactgca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141374 lncRNA upstream 58353 18941098 ~ 18956053 (+) True G104660
TU141371 lncRNA upstream 84013 18930035 ~ 18930393 (+) True G104658
TU141286 lncRNA upstream 365331 18648215 ~ 18649075 (+) True G104588
TU141196 lncRNA upstream 440872 18569451 ~ 18573534 (+) True G104504
TU141195 lncRNA upstream 441019 18569451 ~ 18573387 (+) False G104504
TU141381 lncRNA downstream 4231 19027152 ~ 19029365 (+) True G104666
TU141400 lncRNA downstream 8096 19031017 ~ 19031311 (+) True G104680
TU141402 lncRNA downstream 8096 19031017 ~ 19031273 (+) False G104680
TU141432 lncRNA downstream 95733 19118654 ~ 19120266 (+) True G104702
TU141436 lncRNA downstream 124783 19147704 ~ 19150962 (+) True G104706
XM_007254869.3 mRNA upstream 1440 19008566 ~ 19012966 (+) True LOC103024565
XM_015607258.2 mRNA upstream 118875 18860729 ~ 18895531 (+) False sugt1
XM_007254805.3 mRNA upstream 118875 18860730 ~ 18895531 (+) True sugt1
XM_022674822.1 mRNA upstream 156043 18837322 ~ 18858363 (+) True LOC103031957
XM_022674828.1 mRNA downstream 10484 19033405 ~ 19050916 (+) True LOC103024880
XM_022674826.1 mRNA downstream 10502 19033423 ~ 19050916 (+) False LOC103024880
XM_022674827.1 mRNA downstream 10502 19033423 ~ 19050916 (+) False LOC103024880
XM_022674829.1 mRNA downstream 34477 19057398 ~ 19067487 (+) True LOC111193549
XM_022674833.1 mRNA downstream 145962 19168883 ~ 19309236 (+) False LOC103025512
TU141369 other upstream 91203 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 1887096 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2120683 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2506629 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2556197 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1966352 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1996117 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2304271 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3787158 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4892714 23915635 ~ 23923771 (+) True G106017

Expression Profile