RNA id: XM_022674835.1


Basic Information

Item Value
RNA id XM_022674835.1
length 3438
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC103036301
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19425383 ~ 19457166 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGAGTACTGCGCAGACTCAGTTGAGTGACTACCAACCTAGCTAGCAACAGCAACCCAACCACAGAGCAGGCTGGGATTAGGGAATAACCTGATTGCACAAAGAGAAAACGCTTCTGTTGTAGTACACTGTACCTGCTGCACCCGCCATGGCAAATCGTAACCTGAAGCCGGTGAATATTCAGAATAACGCTCCGTCCCCCAAGCCTGGAAACCCAAAGCGCACCACGGACTCCCCGTCTGCAGAGCGCTCGCAGAAGATGGAGGCCGCCGCGACGCCATCACCTAAAGTCTCCAGCCCCCCTCCAGAAGCTGAAGGAGAAAGCGAGCCGCAAGAAGTGACcctggacctgaagagcttcAGGAGACCTGGAGAAAAAACCTTCACACAGAGGTGCAGACTGTTTGTGGGCAACCTTCCTACAGACCTCACAGAGGACGACTTCAGAAAGCTGTTCGCTAAATATGGCGAGGCTAACGAGGTGTTCATCAACCGAGAGCGAGGATTCGGCTTCATCCGGCTGgAAACCAGAACATTAGCAGAGATCGCCAAGGCTGAGTTGGATGGCACAGTTCTGAGAAACAGGCCTATTCGCATTCGCTTTGCCACTCATGGAGCTGCACTCACAGTTCGAAATCTCTCACCAGTGGTTACCAATGAGCTTCTAGAGCAGAGTTTTGCACAGTTTGGGCCAGTTGAGCGGGCAGTCGTAGTAGTAGATGACCGTGGAAGACCCACAGGCAAGGGAATTGTGGAGTTTTCTAATAAACCTGCTGCAAGAAAGGCTCTTGATCGGTGTGTTGAAGGTGCCCTTCTACTTACCACTTCCCCCCGTCCAGTTGTTGTAGAACCAACAGAACAGTTTGATGATGAAGATGGCCTTCAAGAGAAGCTGTTGCAAAAATCAGCACAATATTACAAGGAGAGGGAGCAGCCGCCACGCTTTGCTCAGCCAGGAACCTTTGAATTTGAATACTCATCTCGCTGGAAGGCGCTTGATGAAATGGAAAAACAGCAGAGGGACCAGGTGAACAGGAACATCCAAGAAGCCAAAGAGAAACTAGAGGCTGAGATGGAGACAGCAAAACATGAGCACCAGCTCATGATGATGAGACAAGATCTCATGAGGCGTCAAGAAGAGTTGCGCCGCCTGGAGGAACTAAGAAACCAAGAACTGCAGAAGCGCAAGCAGATGGAGATGAGGCATGAAGAAGAGCGGCGTAGACGTGAGGAGGAAATGATGCGCCACAGAGACCAGGATGACATGAGGCGCCAGGATGAGATGAGGCGCCAAAGTGACGGTTTTAAGCCTGGCTTTATGGATGGCAGAGAACAGGATATGAGAATGAGTGAAATGGGGGCGCGTGGAGCCATTAATATGGGAGATTCATTTAACCCCGCCACTGCTGTTAGTGGTAACCAGGGCCCTACTCAAATGATGGGCATGGGAATGTCAGGCCGGGGTGGAGCCATGGGGCCTGAGGCATCAACAAATATGGGGGCACCCCTCATTCCTGATAACGGAGCGATGCGTAATGAGAGGTTTTCTAAGGGAGGACCTCCGCAGATGGGTTCTCCCATGGGTGGTCGACCTGGTGTTGACTCTCCCCAGCAGCAGCAATCGCCTGTGATGGGTGGTGCAGGCCCTGTGCCCAGTATGGGTGGTCAGGGTGGCTTTGGGCAAGGAAACCCAGTGGGGGGTGGCTTTGATGGGCCCAACAACAAACGTCGTAGATACTAAGTTCACTTTTGTTCACCTTTATTATTGTGTGGATCAGTTTTAGACCCAGAGCATCCCTTGTCTTGCTTGATACCAGCTGACACATTCTTACGTCCTCAGTGGCACTGCTTTCTGACCAGCGCCAGCTTTTGTCCAGTGACCCAGAACCTTGACACATAGCATGAGCCAGGATTAACGATAATGTGAACCAACAAATCTGTTTATTGCCTTAATTGTGATTGCATTTAAGAGGGTGTCAGACTCTTGATGGTCCACAGTGCACAGGTTGACTGCTTTTCCTTCGCTTCACACATCTGATTATTGCTGAGCATCTTGTGTAATAAGCTCATCAGTTGTGTTAGATGTGGTAAAGCTGGGATGGTACTGCACTGCACCTAGAACCTAGAATTTGACACTTCTGCTATAGGTcatgtgttgctttttaagcATCTCTTTGCTGAGATAGACATAGTCTCTCttgtctttttaaaatttgCCTGATTTTGTGGGAATTTAAAACTTTCATATTGTCGCTGTCATACAAAAACATTATCTCTCTTGTTCTTCAATGATGAATGTTTCTGTTATTTATCATTATAGAACCATTTCTACTGTTGGTTTAGCCATCATTAAAAACTTACAATGTATAGAACAGCTggcaaatttaaataatgtcaAGCATAAAGAGGCAagagtttttttgttcaatagCGACAATACATTATTGCTCCTGTTTGTGTGGTACCTTTGATCCATGTGGCCCATATTCTTTAGCTTGgcaaaatggtttaaaaaaatattttaaatgtctatttattttttttttagttttttgtttgatttcttttgttttcattgtctgtctttaaaaaaacagtgtttgggAAAGGGCTGGACAATAACTGTTCAAGCTTCTATGTTCAATGTGGGTGTTCTAGGCAGTTTTTCTGTGGCAAATTATATCACGTACCAAAATTAAGAAACTtaatttcttaactcttaaatttcttaaaattagaatattaagatactttatttcagtaattcagttcaaaatgtgattcatattatatagatgtattacacacatagtgatctatttgcccacactgccaataaTACCAATtagtatataatattcaaatttttttgagacactaattttGAGTTtacattggctgtaagccataaataacaatgaaagaattaaaagcttaaaatagataactctgtgttatacatctatataatgagtttcacattttgaactgaattactgaaataaatattctcatttttttatatttacttgtaATTTGTGGCCATACCGTCCAACCCCTACTATTGGCCAATATTGTCCAGCCCCTACATCTACTTTGGGGAAGTAAAGAATAAGagtttcattttctttattttatccaAGTCCCATGTCATCAGGTAAATGTTTTTAGTTCAGAGACTTGTTGCTGCTCAGCAAAGCCACACTACAATATCACTTGCACAACACCTGCAGTTACTGTGACAATATGTTCAATACCTTTTTTATTCTAGTGCATCTCTTGTATTTGAAATGGATAGTGATGGTTTGCCTGTGTATGTCATGTAGAACGTGCATGCCTTctagcagtattttttttttcagtgaagttttgaATGTTATTGAGTTGTTCTGCTTTCTCCTAAATTGCAGTCCtttgaaataaaaatgcttACCAACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016363 nuclear matrix cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K24993 PSPC1; paraspeckle component 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141465 lncRNA upstream 102153 19323008 ~ 19323230 (+) True G104729
TU141444 lncRNA upstream 219669 19205426 ~ 19205714 (+) True G104712
TU141436 lncRNA upstream 274421 19147704 ~ 19150962 (+) True G104706
TU141432 lncRNA upstream 305117 19118654 ~ 19120266 (+) True G104702
TU141402 lncRNA upstream 394110 19031017 ~ 19031273 (+) False G104680
TU141550 lncRNA downstream 87001 19534034 ~ 19534314 (+) True G104798
TU141551 lncRNA downstream 87423 19534456 ~ 19536048 (+) True G104799
TU141564 lncRNA downstream 96670 19543703 ~ 19558989 (+) True G104809
TU141571 lncRNA downstream 113000 19560033 ~ 19560591 (+) True G104811
TU141629 lncRNA downstream 243067 19690100 ~ 19690589 (+) True G104841
XM_022674834.1 mRNA upstream 6004 19413020 ~ 19419379 (+) True LOC103025817
XM_022674389.1 mRNA upstream 14170 19409307 ~ 19411213 (+) True LOC103035666
XM_022674833.1 mRNA upstream 116147 19168883 ~ 19309236 (+) False LOC103025512
XM_022674832.1 mRNA upstream 116147 19246922 ~ 19309236 (+) True LOC103025512
XM_022674829.1 mRNA upstream 357896 19057398 ~ 19067487 (+) True LOC111193549
XM_007254821.3 mRNA downstream 35593 19482626 ~ 19532872 (+) True LOC103036999
XM_007254874.2 mRNA downstream 115646 19562679 ~ 19576104 (+) True LOC103026133
XM_007254830.3 mRNA downstream 131256 19578289 ~ 19591937 (+) True LOC103040050
XM_022674839.1 mRNA downstream 147276 19594309 ~ 19607808 (+) True LOC103034347
XM_022674838.1 mRNA downstream 176395 19623428 ~ 19648111 (+) True LOC103026741
TU141369 other upstream 502180 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 2298073 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2531660 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2917606 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2967174 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1542240 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1572005 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 1880159 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3363046 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4468602 23915635 ~ 23923771 (+) True G106017

Expression Profile