RNA id: XM_007254841.3


Basic Information

Item Value
RNA id XM_007254841.3
length 5368
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC103043041
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20081882 ~ 20145614 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTGTTAACTGAATCATTCAATGTGTTTGTTCATATGAATCGGTTCGTGGAAGTGAATCATTTTTGTGAACCGACTCCGCGCATTGGTGGGAGCAGTCAGAAGCGGCGGAGCGGAGCTTTACCGAAGCCCGACCCGAGCTGACGCGGAGTCAGGTGGAGCGCGGGCGGCAAATCAGTTGGTATCGCCGCCGGATCACGGCCGCTGTCAGGCGGGGAGATGAGGAGACTGTTCGGACCTTCTCGGAGTCGGGTTGGCTGTTCGCCGCTGTGGGTTAATTATccgtttgtctgtttgttttctcGGTTCTTATCGCCGCGTTAAGTGACGTTTTCTCCGCCGATACGGAGAGTCTTCGGTTCTCCCgagtttctgtctctctgtcacggAGGAGCTCCGCGGAAACACCGGGCAGGAGAGATTAAAGCTGGAAAAGCTGAAACCGGAGTAAATCTGATGGTTCCGGAGGAGGCGCGCGGACCCGGTGAGGAGCTCTGAGTCAGAACCCCGGCAGgaCTGCAGAACTGGTGATTGAGGAGCGATGTTGCAGCTCCTGCTCGTGTCGCTTTGCTGGTCCACTATTGCCGGAGTTCCCCAGGAGACCTCACACTCTGCGCCCCCCCAGGGAGATGCCACTAGGCCCTACATCCATTACTGCCGCTCTCCAAGCATGGAGACCTTTACTTGCTGGTGGCATCCCCTTGACAACGGTTCCCAGGGTGATGACAACGTCACCTATAGCCTCATGTACACCATTGGCAAGGAGCCTCCAAAAGAGTGTCCAGATTACGTGAGCGGTGGACCGAACAGCTGTTACTTTGACACAGCGCACACCCTGGTCTGGCAGGTGTACTGCATGAAAGTGACGGCACACAGCCTCAGCGGGGTGTTCAGCTCTGAGGAACACTGTTTGGACGTGGCTGATATTGTGGAGATCGATCCACCCTTTAACCTCACCTACACTTTGATGAACATCAGTGAGGATGAGTCGGGTCGCACCGCGGTAGTGTCCTGGCAGTACCCCATCGCCCAGCATGTTCACATAGGGTGGATTACACTCATCTACGAGCTGCGGTTCAGACCACTTTCAAAGCCCAATAAGTGGACGGTCAAAGAGCGTCTACGTGAGCCTcatctggagctgctggacttGCCGGTGGGGAGTTACGAGGTGCAGGTGCGCTGCCGCTCAAACAATAACCACCTATGGAGCAAATGGAGTTCACCTCTTACCATCAATATTCCAGCCAGACACTtaccagATCGCATGCTGTACGCTCTTGTGCTAGTAAGCGGCATTGGAATCACGACTTTGCTCATCATTGGCTTTGGGGTCATTCCACGAGGAAAGAGGATTAAAGCTTTTCTCCTGCCGCCCATACCCAAACCACGCATCAGAGGAATCGATCCCATGCTTCTGAAGGGGAAGATGGAGGAGATCAATCGTCACTTCTCTCTACACGGCTACAAGCCTCCACAGTACTGCGAGGAGACGTGGTATCAGGTCAGCATGGACGACGGTCTCTCCCCGTCTCAGCCGAGCCCACCATCCAATCTGAATAAAGAGCAACATTACAAGAATACCTCCTGTATCCAGAGCCCCGCCTACCCTTACCCAACTGAACTTAACCAACAACTACTTCACACCACTGACAGCCCCAATGCCAACTGCCAAGGCCCCGCCTACTTTAGCAAAGAGGCTTTAGAAGTGGCCCTGCCCCCAGAGAGCCAGCCGTGGGCGTGGCCAGCATCAGGCAACACCCAGCCAGAGCTGGTGTCGTTTCCAGGTATGGATTACAGCATGATCCTGAACCCCACCCCCATAACCGCCGGCACTCCGCCCACCCCGCATGACTTCTACACTTGCGTCAATGGAGTAACTCCCAGTGGGGCCGTGCAGTTGGTGCCCTGCGTTTCGAACCCAATCAAGGGCTCCCCGTATTTTCAGCTGAGGGAGGACATGGAGGAGGACGCGGAGAAGAGCAGCCAGTTGGTGGTCTACTTGGAGAAACAGTCGGAGGCTTCGGCAGGGGGTAATGGGGGTAACCAAGGAGAGACGGAGCAGAATGAATTCGCTGTGCCTTTATTACCCCACCTGACAGATAGAAGCTAAGCATTGTGCTGATGTCATACACATGACACATGAGGACAGTGTGCACACTAAAggactttatatatatatatataattatatatatatatatatatatatatacgcactTGCAATGGACAATCGCtcgttctgtcttaaaagtataGCCTGCTGCACATGACTACACAAGCACATACATATTCACACAGTTTGACTGCATTGAATTGACTTGAATTGCATTGAATTTCACTCATCGTCAAAGAAATTGTTGCAAAAAAgtgttgcacccagaaggaagtgtcagacTGCACTGCTGTATGTAAGAAAGATAAAGGTAAAGATTTAGACTGAAGTGAACAAGCCATCAAGCTGTCAGCGTGTCTTTGTTcgtatcataacgacaggaaaagtacgcCTTGCACGGCTTGTGTCACTGAATGTGTCTGACTGCtcactgttgtcagggttctaatGATTCATTGGAGCACCagtttttctgttgccaagatagaaataCACTAGAAagttacctgaacacacctcatttcgagAACACTACTCCCATCGGCGTAGATGTAAGCACCACTGCACCATCATAAGCACCATTGCAGTTTAAACAATACAGGcacaaggtgtaaaaatagattgttgttgatggggtgtaagatagcaatgagcatcgcaacatgCCTTGTGCAAGGTGTAAGATGGGGcccatggagttgtagaggtgcGATCATCCATGAAATAGAAtttgtgtcttcaaggcaagctcttgagatggcagcagtatgtggacaagcattgtcctgttgaaatagaAAAGGTAGGCTCAATGTCGGGCTCTTGGCTAATTTGGGCTAATTGTTAATCTTGGGATATACCACAGAGCCTCCACATACAGATATGACTGTCATCTCcatctcatttaaaacaaatgccAGAATTAACAGTCTTTACTGAAGGTAACCCACTGTAGTCCGGCACATCTACGCACCATGTTTCATTCCTGGGGTTGATTCCTTATGGTTGCAATCACATTTAGATGATAACAGTACGTTCACACTGCAGCGATGCGAAGCGTTTTTCATTTTGCCTCCCACTGTTTTCCATTGAGAGTGGCGCCAGTGTTGCAAAGAGGACTCTGGGAGCAGTAGCGGCGCGAACGAGGCAAAGCAAGCGGCAAAAAGTTAGAGATATTTTCAACTTCATGCGAGAtttgagaaaatgtgaaaaagctgATTACAGCTATTTCAGGCTTTACTGTGCTCTATGAAAGCCCTCTGTATGATTACAGAGACGGATGAACAACTGTTCCTGAGTTGGATTTTTTAGCAGGTTCGGTGTTTCGTTCGAACACAGCTCTTAACTACAACTCTGCACATTCCTGCTGGTTGCAGATAAACTTGCATGCTCTTTTAGGCACCAGCCCCGACAGCTGCGCCTCTGCATTGTGAATgtggtgtaaatatattatacatattttaatggagCTAAATAAAGGGCCATTTTGGTGGAAAACCTGTTAAAcactgcaaaagacttgagattaTGGCAGAAGTTGACcttgcagcaagacaatgaccctaaaaatacagccagagctacagtggaatggtttagaaaTGCCCAAtcaaaaccttaacctaaatcCCAATGAGCATCTGTGGCAATTGCTGATTGAAGACGCTGTTCAATCTGACTGAGTTTGAGTTATTCTTTAAAGATCTGACGATGAGTGTGTTATGCACATTTGAGTCAATGCAACGTCACCCTTTTTTCAAGAACactctcacgcacacacacaaacacactcacatatagTGTATATGCAGATAGTACGCACACACTAACACCAGAATAATGTGCTCGACAATGAAGAAATACTGAACTCAAGGATTATCAATGGGTTGATTCTGTTTGGACATTGCTTGCCTGAACACTACAGACACGCTACACGGTACAAACTCTACAGATCAACCTTCCTCCCCCTTCTTCGTCCTCTTCTGCCAAATGACGGTGCAATGGACACTAATTCTAATTCTCTCAACGTTCAGTTGAGCTGATTATAGTTTTTCAGCTGAGGACTAGAGGCAGACTCTCGTCGTCACCGTGTTGCAGTTTCTACATTTCTAACTCCAAACTGAACCAAACCAGAAAGTCAAAATCATAGCAGGAAGGAATACAGAGATCTAAACGTACAGATCTGAAGACAATCAGAAGGACAAATTATATTAGAAAACAGAACTGAAGTATGTGATTCCTCCTATAAACTGTTTTTCTTAGCCACTGCAGATGTCTATACAAAAGAGGACCTCCCAGCTCTACTTACTGTGATCACTGTGATCCTTTATCCCTCcagcaaacacacatacatacatacacacgtCGTTATTTTCCATTGTTTCTCTGTTAATTTTGGACAATAAGTAGTTCTGAGGTACAGCCATCATTACCACAAGCGTCCATGATCCATAGCAAAGTTTTAGGAAAACGTCTTTACAGAACGCGCATTGAAAAAAAAGTCATGTTCAGTCTAGTGAGAAATTGTagcaaacaatgtaaaaatgttcaaaattaaTGGTTAAAAGGTTTATCAGTATATAGAGTttttatagagttttttttttagagtttggATATCACAGTACAGTATGAGTTTGGTACAGCAGACAACAAGCAATAAGTAACAGTTTGTTCCATTTCATATAGTCGTATAGTGCCCCCCTGAGGTGGTTTGTAGAAGCAAGAGTGTGTAAATTATGCATATACCAATACAGAGCTTTGAAAAACTATTTATACCAtttaaacttttccacatttcttcatgttATACCCACAAATGTGTATGTTATGGAATTATGTAATGATACAtagttttttaaacttttaataaacagaaatctTAATAATCTGCATACTCTGATACCCCAAAATAAAACCAGTGTGACCAGCTGCCTTCAGAAAATACCTAAACAGTACCTAAATAGTAAAGAAAGTGCGcctgtgtgtaatttattctCAGTATAACCacagctcaaaaagaagaagGAGTATGGCACAACTGCAAACCTTCTTcactctgaaggagctgcaggtGGGAGaattttccaacaggacaacTAATAATCATGTACTTTATAAATTTGGCCTTTATttaagagtggcaagaagaaggCTACATTTAAATGCAAGCCACAAgcagtaccatataaaacacagcaaacatgtgaaaGTATGTTCTctctggtcagatgagacccgattgcaagacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141780 lncRNA upstream 73111 20001316 ~ 20008771 (+) True G104950
TU141781 lncRNA upstream 79493 19996579 ~ 20002389 (+) False G104950
TU141774 lncRNA upstream 134441 19946843 ~ 19947441 (+) True G104944
TU141732 lncRNA upstream 218463 19813383 ~ 19863419 (+) False G104921
TU141728 lncRNA upstream 219107 19813383 ~ 19862775 (+) True G104921
TU141880 lncRNA downstream 57021 20202635 ~ 20202939 (+) True G105007
TU141882 lncRNA downstream 57580 20203194 ~ 20205750 (+) True G105008
TU141891 lncRNA downstream 92236 20237850 ~ 20238248 (+) True G105017
TU141892 lncRNA downstream 97291 20242905 ~ 20243355 (+) True G105018
TU141906 lncRNA downstream 135100 20280714 ~ 20281486 (+) True G105032
XM_007254834.3 mRNA upstream 197391 19878775 ~ 19884491 (+) True prss23
XM_007254831.3 mRNA upstream 259862 19799593 ~ 19822020 (+) True ccdc81
XM_022674841.1 mRNA upstream 259863 19799599 ~ 19822019 (+) False ccdc81
XM_007254832.2 mRNA upstream 283691 19792874 ~ 19798191 (+) True hikeshi
XM_007254833.3 mRNA upstream 290278 19780955 ~ 19791604 (+) True eed
XM_022674858.1 mRNA downstream 7791 20153405 ~ 20165191 (+) True dusp27
XM_007254843.2 mRNA downstream 24312 20169926 ~ 20197233 (+) True LOC103043852
XM_015607259.2 mRNA downstream 93031 20238645 ~ 20242346 (+) True LOC103045165
XM_022674856.1 mRNA downstream 112576 20258190 ~ 20270628 (+) True LOC103045776
XM_007254850.2 mRNA downstream 112748 20258362 ~ 20270628 (+) False LOC103045776
TU141369 other upstream 1158679 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 2954572 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 3188159 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 3574105 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 3623673 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 843659 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 873424 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 1181578 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 2664465 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 3770021 23915635 ~ 23923771 (+) True G106017

Expression Profile