RNA id: XM_022674788.1


Basic Information

Item Value
RNA id XM_022674788.1
length 1585
RNA type mRNA
GC content 0.49
exon number 8
gene id timmdc1
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17065402 ~ 17076913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCGCTGCAGGAGCCGCTCCGCGTGTGTTGACTTTGTGGAGGAGGATGAAGGAGAAGTGATTTATCAGCCCGCTGGAGCGAGATGCACCCAGAGCGCCCCTTTCCGTGCACGCCCGAGTGCGGGGTGAAGGCGACAGACACGGCCTGCCCCAGGGCCTTTTACACCGGACTGCTCTGGGAGCTTTTCAGGTTCACCTTGCCCAGAGTGCACGCGGCTGAGAGCGCAGATACTCAGACTAACACCACCCTGCCCAAACATGTGGGCAGACCGGAGTTTCCTGACACGGGATGGGACCGCATTAAAGACCTGATCCAGCCAGAAACTGGACAGCGGTACTCAGAGGAGCTGAAGAACGTGGTGAAGAGCGGGATAACAGCAGCTTTGGTGGGAATGGTTTACGGAGGCTTGCCAGCAGGGCGCCACGCCCGCGAGAGATACATCCAGCTCAGCCAGGCGGAGATCTTCAGGAACAGGGCGGATGCAGTGCGTTCGGCCCATAATGCAGCTATCCGAGGATTCGTGAGGTACGGGTGGAGGTGGAGCTGGAGGATGGCTGCTTTTGTGACTCTTTTTAACTCTGTCAGCACCGGCCTCTCTGTGTACAGAGACGAAAACGCCATGAGTCACTTCGCTGCAGCGGGAGctGTGACTGGGGGCGTGTTCCGGATGAATCTGGGTCTCAGGGGACTGGTGGCAGGAACCATTATTGGAGCTGCTTTGGGTGTGCCAGCTGGAGCGTTGATTATCGGCCTACAGAAACTGGGTGGAGAGACAATGCGAGAGAAAAGACGGCGAGAGCGGAGAGAACTGTACGAGTTGAAGGTGGCTGAATGgaACGCTCGTTTACAACTTACAGACAGCGTGATTGATGAAATAAGTGGGAAGGACATGGATACTGACCTTCAGCGGATTGAAGAGTTGCTTAACCTGCCTAGAAATGAAGATTCAACCAAGTCTTCTGAAGGCCATTGACAACGAGCCTGACTTCAGTGATGGACAGTGACGGTGTTAGGCTTTAACACATTACAGATTTTATCACATGACATTTGCTTCATGACTCTTCATATGGTGAAATACACTGTATGGATTCACCATTAACATCATTATTTCAGATGTCCCATTGCCACATATGTAAAAAATCAAGCACCTGGCCATACAGTCTCCTTTACGGACATTACTAAAAGAATATGTTTATTCCTCCTGGATGTTTCACAAAACTCACATAAAGTTACAGAACGGGGTCACCAAGTGCTAAGGAGCAAAGTGCAGAAAAGTCTTCAACACTCAATACCTGCAGAGTTCTAAACCCTCTGCAAAAAGGGGACTGACTCCACACTAAAGCCAGTGGATTTATAATGGGAAGTCATAAAAGCTCTGTCTGTAGTAGTCCCAGTATTAACCAGCAATAAACCCCTGCTGGTTTATTATGGCCCTCATGTGTGGAAGGTTTGATGACTGTGATCCTACATGTGTGTTTGATGGAAATctcaaatataatttattttatattgtgtctGAACGTGTTTTAAGAACATTGTAACACTACAAAGATCACAAAATAATCAAGAGCTGGGTTAAACACTG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140739 lncRNA upstream 17679 17046772 ~ 17047740 (+) True G104162
TU140723 lncRNA upstream 130936 16927224 ~ 16934483 (+) True G104151
TU140707 lncRNA upstream 204217 16860988 ~ 16861202 (+) True G104144
TU140633 lncRNA upstream 378046 16682740 ~ 16687373 (+) True G104082
TU140538 lncRNA upstream 505438 16555694 ~ 16559981 (+) False LOC103037450
TU140767 lncRNA downstream 57129 17134042 ~ 17138965 (+) False LOC103031769
TU140772 lncRNA downstream 105383 17182296 ~ 17182538 (+) True G104177
TU140779 lncRNA downstream 277516 17354429 ~ 17356491 (+) True G104183
TU140782 lncRNA downstream 336489 17413402 ~ 17417938 (+) False LOC111193547
TU140788 lncRNA downstream 405211 17482124 ~ 17485186 (+) True G104190
XM_022674787.1 mRNA upstream 5259 17049429 ~ 17060160 (+) True poglut1
XM_007259046.3 mRNA upstream 45217 16909648 ~ 17020202 (+) False vangl1
XM_007259047.3 mRNA upstream 45217 16911194 ~ 17020202 (+) True vangl1
XM_007259048.3 mRNA upstream 170827 16888386 ~ 16894592 (+) True LOC103035065
XM_007259049.3 mRNA upstream 248924 16803908 ~ 16816495 (+) True LOC103035380
XM_022674789.1 mRNA downstream 4288 17081201 ~ 17109560 (+) True LOC103032412
XM_007259037.3 mRNA downstream 36397 17113310 ~ 17117221 (+) True LOC103032094
XM_022674790.1 mRNA downstream 42952 17119865 ~ 17138973 (+) True LOC103031769
XM_007259035.3 mRNA downstream 65620 17142533 ~ 17149608 (+) True chst10
XM_007259034.3 mRNA downstream 106100 17183013 ~ 17199615 (+) True lonrf2
TU140710 other upstream 171696 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 557642 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 607210 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 2373220 14691043 ~ 14692199 (+) True G103561
TU139970 other upstream 2446337 14618635 ~ 14619082 (+) True G103551
TU140760 other downstream 42934 17119847 ~ 17127310 (+) False LOC103031769
TU141369 other downstream 1842147 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 3912360 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 3942125 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 4250279 21327192 ~ 21368253 (+) True G105357

Expression Profile