RNA id: XM_007259047.3


Basic Information

Item Value
RNA id XM_007259047.3
length 4046
RNA type mRNA
GC content 0.48
exon number 9
gene id vangl1
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16909648 ~ 17020202 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttccaACTCCCTCTTTCCTTCCCTTCCCTTCCCTTTAGTGGGAAGCCGAAAGGCGTCGACACGCTGCTTTAGTTAAAGGCTAGGTTAACTAACCTCGCTATAATAACCGGAGAAAAAGCTTAGGTTAGCTATCCTAGCTAGCTACTGTCGCCTCCTCGCTTTTCTGCTCTTTTCCAGCTTTAAGCATTCTTTCCCCCCTCAATATCTGCCTGTACCGGCGGTGTCTAGTCGAGGGCGGTTCGCTGCTGTTCACCGCGCCGCTGTCTGGAGCAGGTTTTGGCGCTCCAGGCCCTGAGGAGACCGGGGAGTTTCCTACCGCGTCCGCCATTTGTTCTGGTTGTGGGAGGGAGGCTACAGGTAGCCAGGGCTGGGAGTTGGCGCACACACATTTAGAAGTGAGCTAGTTAATGAGGCAGCTGAGGTGTTTTCACTACTCAACGGCATGTcagATTGACGCTTAATGGCTGGGAGCCCCCAGGCTCACGTCCAAGATTGACTCTCGGCAGAGCACAGTCTCCACCAATCTGCTGAGCGAGTTTCGCCTCCTGCCAGATAAAACCGCCCACAAGCTTCCACTACGTCTGCCCAGCCCCAAGCCCAGCAACGTCCAGGACGCCCTCAGCCAATCGCTGGGGCAGGAAAGCGCCAACATGGACACGGAGTCCACCTACTCTGGCTACTCGTACCACTCTGGCCGGTCGAGGGGCTCACACAGGCATGGgGAGCGCAGTCGTGACCGGCACAAGTCCCGCAGTAAAGACAGCAGCCGCTCAGAGAAATCCGTCACCATCAACGCTCCACCTGCTGAGCCCTTGTTAGGAGACCAGTCGATGCGAGGAGAAGAGATGCAGGATGACAACTGGGGCGAGACCACCACGGCCGTCACCGGCACCTCCGAGCACTCGCTCTCGCAAGAAGACATCGTCCGCATCAGCAAGGACCTGGACGACAGCGTGGGTCTGGACTGCAAGCATTACCTCTCCGTCTCCTTCTCCGTCATCCTGGGCCTGCTGGTGCTCCTCACGCCGCTGGCCTTCCTGGTGCTGCCTCACCTGCTGTGGCCGGAGAGACTGCGGGTCTGCGGCACGGCCTGCGAGGGTCTCTTCATCTCCGTCGCCTTCAAGCTGCTCATTCTGCTGCTGGCCGTGTGGGCGCTGTTCTTCCGGCCCCCCCGAGCGGGCATGCCCCGAATCTTCGTGTTCCGCGCCCTGCTGTCCACGCTGGTGTTCCTGTTCGTGCTCTCCTATTGGCTGTTCTATGGAGTGCGCATCTTCGACACAAAGGATGAGGATTATCAGGGCATTGTGCAGTATGCAGTCTCTCTGGTAGACGCTCTGCTGTTTATCCACTACCTGGCCATAGTGCTACTGGAGCTGCGGCAGCTGCAGCCCTGCTTCTCCCTGTGCGTCACTCGCTCTACAGACGGAGAGACGCGCCACTACAACCTGGGACAGCTGAGTATCCAGAGGGCAGCTGTAGCCGTGCTGGAGAACTACTACAGAGATTTCCCTGTACACAACCCAGCTCTACTCACAGCCTCCAAGTCCCGCGCAGCCAAACACCTGGCAGGCCTCAAGGTCTACAACGTAGATGGTCCTGGAGGCAATAACGCAGCAGCAGGTATCGCCCAGTCTCAGTCCCGAGCCATGATCGCCGCTGCCGCCCGCCGACGAGACACCAGCCATAATGAGCTCTACTACGAGGAAGCAGAGCACGAGAGACGCGTCCGCAAGCGCAAAGCCAGGTTGGTGGTGGCAGTTGAAGAGGCTTTCACGCACATCCGCCGCCTCCAGGAGGAGGAGCAGAAGAAGTCCCCTGGGGAAATCATGGATCCACGCGAGGCGGCGCAGGCCATCTTTCCTTCTATGGCCCGAGCCCTGCAGAAGTACCTGCGCACCACCCGTCAGCAGCACTGCCACAGCATGGAGAGCATCCAGCAGCATCTAGCCTTCTGCATCACACACAACATGACGCCTAAGGCGTTTCTGGAGAGCTACCTGATGCCAGGCCCCACGCTGCAGTACGGCCGCGAGCGCTGGCTGGCCCACCAGTGGACCCTCATCAGCGAGGCCTCAGTGACCAGCGGCCTGAAGGAGGGCACTGTATTTCTGCTAAAATGCATAGACTTCAGCTTGGTGGTCACCACTAAAAAGATCCCCTACATCAAGCTCTCTGAGGAGTTCATCGACCCCAAGTCCCACAAGTTTGTCCTGCGGCTACAGTCGGAGACTTCGGTGTAGCCATATATCACAtcttgtcttttgttttgtttgttttttcagtcgCTCACAAGCTATTTTTGTGTTGGGTTGAGATTTTCAAATGTAATGAgtttttcttagatttttttatgtatgtaatatatacatatgaatCTTTATATCacatatttgaatatatttcttttcttttttgtttagttttttttatcagtttgggCAGGCACGTTAAGCAGGATGCACTGTTCTAACATGCTCACGTTCCAAACATGCAAAAGTGTACAAAGACATGCAAATGTAACATGAGAGAATATAGTGCACAAGACTTCTTTTtcacatcctttttttttttaaaacaccagAAACTCTGAACTATCCAGTGGACCACTTTCAAAACCTCTCAAAAAATGGTGGATGGACCCAAAGGATTCTCACAGGAGAGAgatgacaacatttctcttggGTTTTCTCTTTCCTCTCAGCTCAGACGTGGACATgttcaggcaaaggcactgtgAATCAAATCTAACCCCAGTAGACGGGATTTCTCCACTTGTTCGCCACATGTTTCTGTATCAGCGGAGAACCCGCACCTCTCTGCACTCTCAGACCGCTGTACACTCtctgttcactctctctctctctccgtctgcCGCAGAGGTTGTTATAGCAACCGAGCTTTGACTCCACGGGGTTGAAAAACATGAGACATGGTCGAAATGATGACCTTTTTCTACTGTAAGTGTGTATGAACTCTAGCGGTGCTTCTTTTTTATCATCAACAATCACATTGGATCTGTCTCATCACTGATAAAACACAAcataatcacattttattttttgtttttcatttacacattatACCTTTTTTTTGGGGTCAGTATCAATTTAATGTGCCTTTTGTGTCTGCAGCTtttactctgaatgaacactgaaaaaaagccatttaaacagAGAATTCCTTGATGATATCTAAACattgatgatatatatattccttGATGATATATAAACCTCTAAGCCCTCTAAGAAAGAAACTGTTTACATCAGTTTTCATTACAACCTtcataatatttagttttttttaaggaactGAGGGCActtgctgcatgttcagcagttaacaatattcattttcacTTATTAGTTAATGTTTCTCAAATAGTTCCCATACTTAGGTATGggaggtaaagcttaagctaaaatatcagtaaattaattaataatttgagaaaattaaactgtATATTTGAAATGGAAATTAACAAACTatgaacattttataatgttttcatTATAAGCCAATTTtagcaaatatttttaaattgtccagtaaaaaaagtcttataaatatgataagtAGTCAAAAGAGTAATGCCTTTTCTCTGTAATGAGGAtcaaaaggcacagtattctgataatgaccctaTTCAACTTGTGCACATTGTACAGATGTGAGGTGTTGGTGAGTGTGTTGTTAAAGTGGTAAGAGTTTAAATTTAGTGTTCAGCTTGAGAAATGGCAGTTCAATGAGTGGAAACAGTTATTTAGGGTATTTTCACACAGCAGATTAATTTTTGGTGGTGTGGCAGTGTGAAGGGGCTAAGATACACTAAATCTGAGGCAGTGTCATTCTGTCTGAACAGCCAGAACAGAATTCATGGGACGTTTAAatcaaagaaaggaaaaaaggcaGAATTAAAGGCTGAAAATGGACAACATCATTGAGTAAGGAAGGGTTTAGTGGGAGATAATGACCTCATAATCGGTAACAGATCTcgttaatataaaaataaataaaaaaataaaggttatgttcacatta

Function

GO: NA

KEGG:

id description
K04510 VANGL; vang-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140707 lncRNA upstream 49992 16860988 ~ 16861202 (+) True G104144
TU140633 lncRNA upstream 223821 16682740 ~ 16687373 (+) True G104082
TU140537 lncRNA upstream 351213 16555694 ~ 16559981 (+) False LOC103037450
TU140538 lncRNA upstream 351213 16555694 ~ 16559981 (+) False LOC103037450
TU140512 lncRNA upstream 365184 16544256 ~ 16546010 (+) True G104001
TU140739 lncRNA downstream 26570 17046772 ~ 17047740 (+) True G104162
TU140767 lncRNA downstream 113840 17134042 ~ 17138965 (+) False LOC103031769
TU140772 lncRNA downstream 162094 17182296 ~ 17182538 (+) True G104177
TU140779 lncRNA downstream 334227 17354429 ~ 17356491 (+) True G104183
TU140782 lncRNA downstream 393200 17413402 ~ 17417938 (+) False LOC111193547
XM_007259048.3 mRNA upstream 16602 16888386 ~ 16894592 (+) True LOC103035065
XM_007259049.3 mRNA upstream 94699 16803908 ~ 16816495 (+) True LOC103035380
XM_015608321.2 mRNA upstream 112304 16790748 ~ 16798890 (+) True LOC103036216
XM_022674784.1 mRNA upstream 112304 16790748 ~ 16798890 (+) False LOC103036216
XM_022674782.1 mRNA upstream 248849 16628689 ~ 16662345 (+) True LOC111188171
XM_022674787.1 mRNA downstream 29227 17049429 ~ 17060160 (+) True poglut1
XM_007259043.3 mRNA downstream 45200 17065402 ~ 17076913 (+) False timmdc1
XM_022674788.1 mRNA downstream 45217 17065419 ~ 17076913 (+) False timmdc1
XM_007259042.3 mRNA downstream 46989 17067191 ~ 17076913 (+) True timmdc1
XM_022674789.1 mRNA downstream 60999 17081201 ~ 17109560 (+) True LOC103032412
TU140710 other upstream 17471 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 403417 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 452985 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 2218995 14691043 ~ 14692199 (+) True G103561
TU139970 other upstream 2292112 14618635 ~ 14619082 (+) True G103551
TU140760 other downstream 99645 17119847 ~ 17127310 (+) False LOC103031769
TU141369 other downstream 1898858 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 3969071 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 3998836 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 4306990 21327192 ~ 21368253 (+) True G105357

Expression Profile