RNA id: XM_007259049.3


Basic Information

Item Value
RNA id XM_007259049.3
length 1494
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC103035380
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16803908 ~ 16816495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCAGCTCCATTCCCCTGCACTCGCTGACCTGGATCTACTGGATTGCTTATCATGAAGCAGCTCCTGGTGTTCCTGTGTGGGTCTCTGGCTTTGGCAGTAAGCTTAGCTGCTCCAACGCAGCATGATGCAATGATGGCAGatccTCCGGTAGAAAATCCAAAGGCTGATGAAGATTCCCACTACGACTCCAAGTTTGACCGCTGTGATGGCGTTGAGTTTGATGCCATCGCCCCTGATGAGACAggacaaatgttcttttttaaagGTGACCATTTATGGAAGGGTTTCGCAGGCCCCAGTGAGCATGCAAATGGTACATTCCAGGAGCTAGATGAATATCATCACCTGGGTCATGTGGACGCAGCCTTCCGCATGCACAATAAAGAAGAGGAAGCTCAAAAAGATCACGACCACATCTTTTTCTTCTTGGATGATAAAGTCTTTAGCTACTACAACCACATTCTGGAGAAAGGCTTCCCCTTAGAGATCCAGCAGGTGTTTCCTGGAGTGCCCAGCCACCTAGACGCAGCAGTGGAGTGTCCTAAAGGAGAGTGCATCACTGATTCAGTGCTGTTCTTTAAAGGACATGAGGTGTACAACTTTGATATCAAGACTAAGACAGTGAAGAAGAAGGTGTGGGATCACTTGCCCAACTGCACCTCAGCGGTCCGCTGGCTCGAGCATTACTACTGTTTCCACGGCCACAACTTCACCCGATTCCATCCCGTGTCTGGAGAGGTAGTTGGAGATTATCCCAAAGATGCCAGACGCTACTTCATGCGCTGCGCAGATTTTGgtCATGGGGCCGGCCACAAAAAGCCACCCTGTAAACTCGACGCCATCAGCACTGACGACAAGGGCAGGACTTATGCATTTATGGAGAATGTATACATTAGGTTGGATTCACACCGTGATGGAAGCCATCCTTTCCCCATAACAAGATCATGGAAGGAGATTTCAGGACGCGTGGATGCCGTTTTTGCTTATGGTGACAAGTTGTACATTATCCAGGGTAATCAAATCTACATCTACAAATCAGCAGCACATTACACTCTAATAGAGGGCTATCCTAAACCCCTGAAAGAAGAGCTGGGCATCGAGGGACCCGTGAATGCTGCATTTCTCTGTCCAAATCAACATGTGGTCCATGTTATAAAAGGTCAGAAAATGTTGGAAATTGATCTGACTGCAACTCCGAGAACTGTTAAAAAAGAACTTCCAATCACCATTGCACAAGTAGATGCTGCCATGTGTGACACTGATGGTGTGAAGGTGTACGTTGGCCCAGTGTACTACAAGTACCAGAGCCCTACCATCATGGCTGTTGCCAAAATCAGCCCAGCACCCCAAAAGATCTCACCTGAAAAGTTTAGCTGTGAGGCATAGAAAGCTCATATGAATTACAGCAAATGCTAATTAGTTGTAATTCTTTCATTCTTTGTGCATATGGAGTTTCTGcacatgaatataaaaataaactttgtaatttgtaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18977 HPX; hemopexin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140633 lncRNA upstream 116535 16682740 ~ 16687373 (+) True G104082
TU140537 lncRNA upstream 243927 16555694 ~ 16559981 (+) False LOC103037450
TU140538 lncRNA upstream 243927 16555694 ~ 16559981 (+) False LOC103037450
TU140512 lncRNA upstream 257898 16544256 ~ 16546010 (+) True G104001
XR_002650593.1 lncRNA upstream 366276 16433809 ~ 16437632 (+) True LOC111193544
TU140707 lncRNA downstream 44493 16860988 ~ 16861202 (+) True G104144
TU140723 lncRNA downstream 110729 16927224 ~ 16934483 (+) True G104151
TU140739 lncRNA downstream 230277 17046772 ~ 17047740 (+) True G104162
TU140767 lncRNA downstream 317547 17134042 ~ 17138965 (+) False LOC103031769
TU140772 lncRNA downstream 365801 17182296 ~ 17182538 (+) True G104177
XM_015608321.2 mRNA upstream 5018 16790748 ~ 16798890 (+) True LOC103036216
XM_022674784.1 mRNA upstream 5018 16790748 ~ 16798890 (+) False LOC103036216
XM_022674782.1 mRNA upstream 141563 16628689 ~ 16662345 (+) True LOC111188171
XM_007259054.3 mRNA upstream 178324 16611601 ~ 16625584 (+) False LOC103036820
XM_015608317.2 mRNA upstream 178324 16611602 ~ 16625584 (+) True LOC103036820
XM_007259048.3 mRNA downstream 71891 16888386 ~ 16894592 (+) True LOC103035065
XM_007259046.3 mRNA downstream 93153 16909648 ~ 17020202 (+) False vangl1
XM_007259047.3 mRNA downstream 94699 16911194 ~ 17020202 (+) True vangl1
XM_022674787.1 mRNA downstream 232934 17049429 ~ 17060160 (+) True poglut1
XM_007259043.3 mRNA downstream 248907 17065402 ~ 17076913 (+) False timmdc1
TU140514 other upstream 296131 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 345699 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 2111709 14691043 ~ 14692199 (+) True G103561
TU139970 other upstream 2184826 14618635 ~ 14619082 (+) True G103551
TU139893 other upstream 2542369 14260625 ~ 14261539 (+) True G103490
TU140710 other downstream 71901 16888396 ~ 16893723 (+) False LOC103035065
TU140760 other downstream 303352 17119847 ~ 17127310 (+) False LOC103031769
TU141369 other downstream 2102565 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 4172778 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 4202543 21019038 ~ 21028990 (+) True G105312

Expression Profile