RNA id: XM_007260274.2


Basic Information

Item Value
RNA id XM_007260274.2
length 4171
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC103042026
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22601210 ~ 22616958 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCCAAGCCCCGCCCCTGCGTGCTCGCTCTGCTAGTTCACAATAGTGGCCGGAGCGACGGAAAGAATGGAGTAGAGGAGTAAAATAAAGCGCTATTAAACGAGTTTAACCTGTGAATACAGAGCCGGACAGTTCAGTATGAGCGGCGGGGGAGTTTGAGGGAGACGGCTGAGGGATGTATTATTCAAGTAAGAGGCGGGGGGAAGATGGAATCGCTGCCATCATCGACTTCCTCCTGTCAAATGCCAGGCTGGTGCTTGGAGTAGGCGGGGCTGCAGTGCTGGGAATCGCCACATTAGCTGTGAAAAAGCTGATAGAACGTGCCGGCCGGCCTCCTGATGATGAGAAGCCTGATAAGAAGATGACTGACAGCTGGGAAGAGCTTGGTCTGGTTGGTGCCTCGCCCAAACTCCTACGGAAGGGCATTGAGGGCGTGGTCATGAAACAGATCACTGCAGCAACCAAGAAAGCAGATTTGTCTCAGCCAGCTCCACTGCCCCAGCCCCAGAAGAATGAGGCTGAAGCCAATCCTCGTCGCAGGCGGATGGACCTGTGTGTGCTGACCTTTGCAGACCGCCTGCAGCAGTATTACCGTACGCGCGTGTGTCTGCCCGCTGATGAGGTGTCCAGGGCTAAGCAGCGTGCTCTGGACATCGCCACAGAGATCCACGCCTTCCTGCACTCAAAACACGCCGACATGCCTCTGGGAGAGATGACTTTAGGGGGATCGCTGCTCGATGACCTGCAGGTGGTCAAAGCAGATCATGCCTGCCTTCTAATTCCGCTGCAGCTGGAGTCTAGTCTCTGGACCCCCATAGCAGGAGAGGACACTTTCTTGGGCCATCCTCAGTACTGCATGGTGCGGCGAGAAAACCTCGAGTATTTCCCCCGTGGGCGGAGCTACTGGGACAGACACCTCCTGGGCGGGTACCTTTCATCCCGACTTGTCGCAGAGCAGCTTGGCAAGTCCATAATGGAGTCAATGAACTGGCCGTCATTGATTGGAACGCTGGAGTGCGAGGTCCGGCCAGTTCTCGGCTCTCCAGCGCTCAAGTTAGAAATCCGCAGCCTGAGCGAGAACTCCAGCGACGACGAGGAGAAGCTGTTTATCAGCGTGCTGCCGATGGTGCGCCTGGGGGAGATGACGTTGGCGGCGCAGCCAGAGATCACCGGCTCCTTTGACTACGTGTGGTACCAGAGCCTGTACACCAGCGAAACGGCCCGATTGGCCAGCCTCGACCAATCAGGTGGAGGATCAGAGGTCCGAAGAAAGTGCCTCAAAACGTTAAAAGCCGTGTGCCGGAACTGTCCCGCTCTCCACAGGCTCACGGGTGCACAGCTAAGCAACGTCATTCTACACATGAGTGAGAAAGAATCTGACTGGTCCGAATCGGCTTTTGCAGATCGGTTCCAGCAAGCCATTACAGAGTTGATCGGCTACTTGGAGATGGGGGTCCTGCCCAGTTATTTTAAGCCTGCTGTCAACCTGCTTCAGGGCTTCAGTGAGGACGACATTGACGAGATGGGCTTCATGCTCTACTGTGCTGTCAGCGAGCCGGAGATACTGCTAATATGAGCTTCCTGAGTACTACTAGAATGCATGGAACTGTATCATCGCTGTTGTATTGTCCTATTTTATCTGCCCTATACATTGTGTGGACTTTCGATTAAGAAAATGGGCCGACAGAAATGGTCTGAAATGGCTTTCACTAAAATCTTTTATGTTAACTAGCATTAAACTTTCCCTTTTCTCCTGAATACAAAAGGAGCAATGAGATGTTTTCCACAGCGATGATATGTTCCATGTGTCTTGGTCAAATTCCACTGATCCAAATTCCTTTCACATTTAATGGTAGAATTGGTCATGGTCATGCAGAGTGAGTTTGGCatgaatctcttttttttttttcttgatttgattttttttgtttttgtctcccCATTTAGAATATTAGGTTTTGCTGTGTTTCTGTCTTTATATCTGAAATCTGTTTTAAACTTTAGTTTAAATTTCAGTTAATTCAGTCAGTGTTAATAATCGAAATAATAGGGCCATACTACAACACAAATATAGCTATTTACTATAAAACCCAGCAGTGAAGGTACGTGTATTTTTGCACCCTGACCATCTACATaaacatttttgcatttaggccaCAACCTTCTCTAAAACTATCTGTGTCAGTCATTAGACAGTAAATTTATGTCTTGTAATATCAATCTCAGTAATGTATCATTTAGAAGCATTAAGCTTTTTAGACAACCATTTAGCATTATGAACAATTCTCTAGTTCATTAATTGTGGTGTGGTATCATAAAAGTCAGTGGAattttttaaattgcacataAATGCACCCAGGCtgcttttaaaacagatacaaatccaatcactCAGACTACTTTAGGAGGTGGTCTTATACACATTTGAGCCACATGTTATAGTACTGTACAGTATATGCAATTGACAACCAGATCTCCTCCCAGTAAAACCAAAACACCATTCAGCACAGTAATCAGCTGGAGATGCATGAaactaataaatgtaaatgcatgtgCCTAACAtctagtatctggattgtatcaTATGAGTCACATGAAGTGATCATGTGTATGGGGGTCATGGGTGTTGTTctaccacacagacacacacaggctaTTAAGTGTTAATCTCATCAAGTGACGAAATCAGTGGACAGATCTCAGTCCTGATAAAGTCCTCCTACTCTGTGCATTTTGGAGGTTTGGAGCTGATTAGTTCAGAAAATAGCAGAGAACATGCAGGACCGGGGTTTTCCAGAACCAGCTCCAAGTGTGTTACTGGCACAACATGTTTCTGTTGAAAAGCATATTTAAGAAACCTTTGATATagtgttattatattatcaacTATGCAGTGAGCGAGGTAAAGTATGAATGCTAGACACTTATTTAGCAGGTATATGTGAGTTCTGCATTGCCTTTAATTTGTATTGTTACACAAGTGAATATATACATTACATTGAATTTAATGGGAATTTCATTAATGGTCATTCAGAGTGGATTTGGTGTGAAATGGTTTATTAAGCACATTTCTAACCATTTCTTGAATTAATAACTGTTGGAAAGGAGTTTTCAGAAGCAAACCTCCTCACAGCAGGTCAACATTATTTACTAAAcgcaaacatttatttttatattccaaATTTCTGCAGACATTTAATATTCCTCTATCCACAGTATAATTGGAATaaatcatagaaggcattatcacccacagtggacagcatagtttgtggtaatgatcgtgattGGCAGCTTCTGGCttaaattgtccatgcaaacaggcAAGCTAGCATTCTAGCATTCAGTGCGGATCATACACCCACGTACCGTACAGGCTTGGcatttggcatgtctgtgtaaaacattgttttcacATGTGAATTCTTGAAAAATTACTGTACACATTTGATTGAATACAATCCAAATACTAATTGCATGAAGTTACCAGGTGTAAAATTTCTTACTTGATTTATAATTGAGTGTTTCACACAAACTTACTCTGAATGACTTTCTTTACCTCTTGATAATTTATTTACCATTTATTTCTGTAGAAGTTTTGCTAAACAGTGGAATTCCCCTTTAACCTCATGTCATCAGTGGCAGCAGGCAGATTGGCCTTTGTGTGTATggtgtctctttctttctattctcTTTTCCCCCAGTCTGTAATCTGTTGGTCTATACTGGGCTGGTTGTAGCCATAAATGAAGCTCTAATTACCCAGCAGCACTTTATGCTTAGCTTGACACATATATATTAGGGAGCTTTACTGAATGAATCTTCATCTCCTCTTGGAAgcatgtttgactttaaaaaagcaataaagcGAGACTGCAGTTCATTCTCTGATTTTATTTGGATGGACTTGATGGATGGCTTTTtgtttcttgctttttttttttttttttttttttttttttctcctgcagACTACTGAGTGTATTTCTTCTAATGGAAAAACTGAGCGTCATGGTAATAGTGTTTTGGTTGGAGGGGTGGATGTGAGTATGTGTGAGTGTTGGacacagtctgtcagaatataCAAAATTTTGATGAGGGTGTGTGAAATTATTTATAATCAATCCTCATCTTTGTGTAACGGTGCCTAAATAAAGAGCTTATTTCAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142733 lncRNA upstream 58546 22541173 ~ 22542665 (+) False LOC103045705
TU142690 lncRNA upstream 110469 22488238 ~ 22490742 (+) False G105581
TU142692 lncRNA upstream 110469 22488238 ~ 22490742 (+) False G105581
TU142693 lncRNA upstream 110469 22488238 ~ 22490742 (+) True G105581
TU142689 lncRNA upstream 134412 22409426 ~ 22466799 (+) True G105580
TU142768 lncRNA downstream 74693 22691651 ~ 22692463 (+) True G105645
TU142777 lncRNA downstream 89542 22706500 ~ 22706805 (+) True G105654
TU142793 lncRNA downstream 162312 22779270 ~ 22791181 (+) True G105668
TU142896 lncRNA downstream 308159 22925117 ~ 22928356 (+) True G105760
TU142931 lncRNA downstream 510997 23127955 ~ 23128154 (+) True G105793
XM_007260273.3 mRNA upstream 1357 22592638 ~ 22599854 (+) True alkbh5
XM_022674357.1 mRNA upstream 12250 22525257 ~ 22588961 (+) True LOC103045705
XM_022674356.1 mRNA upstream 83635 22509446 ~ 22517576 (+) True LOC111193458
XM_022674890.1 mRNA upstream 120783 22313226 ~ 22480428 (+) True LOC103046323
XM_022674355.1 mRNA upstream 317758 22255085 ~ 22283453 (+) True LOC103046939
XM_022674893.1 mRNA downstream 2072 22619030 ~ 22631714 (+) True LOC103042343
XM_022674896.1 mRNA downstream 54755 22671713 ~ 22689088 (+) False LOC103041008
XM_022674897.1 mRNA downstream 55206 22672164 ~ 22689088 (+) True LOC103041008
XM_022674898.1 mRNA downstream 145480 22762438 ~ 22774207 (+) True LOC103039247
XM_007260264.3 mRNA downstream 193121 22810079 ~ 22820096 (+) True LOC103038624
TU142415 other upstream 1232958 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 1572221 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 1608399 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 3678008 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 5473901 17119847 ~ 17127310 (+) False LOC103031769
XR_002650601.1 other downstream 193121 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 1298677 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 1370249 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 1794250 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 2744786 25361744 ~ 25369439 (+) True LOC111193563

Expression Profile