RNA id: XM_007260284.3


Basic Information

Item Value
RNA id XM_007260284.3
length 4198
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC103045101
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23282731 ~ 23286928 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGGAGGCaactgttttcatgtctttcatATGTTTCTATTTTTGTGGAGTTGAAAGTTTTACATCTCAGAGACCACCATGTCATCAATGTAATCAGTATCACTTCTGCAACTGCTCTGCTGAAAATCTTCTGCAAGTCCCAATTGTTCCTGCAGACGTTCTCCTCTTGGACGTGTCCTTCAATCAGATTGAATTGATTGAAGAGGAAGATCTGAGCATCTGCACTGAAATGAAAACCTTAAAGCTGCAGAACAACAATCTGAAATGGATCCATGAAGAAGCGTTCAATTCACAGCGTTACCTAGAGGTGCTTGACATGTCCTTCAATCGGCTCGAGCACATTTCTCCATCCTGGTTTTATAAACTTAATTCTCTGAAGCACCTGAACCTTCTGGGAAATCTGTACACAACCATAGGATCTGACCCGCTATTTCAGTTTGCTGGGAACCTACGAACATTAAAATTTGGCAACCCAGCACTGAAACAAGTAAGAAGCAATGTCTTCAGTGGTCTTAGCTGTTTGGATGAGATGATGTTTCTCGGAAGTAATCTGAGTTCCTACAAGATGGGGAGCTTCAAAATGCCTCAACCCATTAGAACAGTTTCACTAAGCCTTTACGATCTGTTTCAAGAAAGCCCAAAACTTGTCTCAAAGATCCTTCAAGATGTTTCCCACCCAGAAACATCACTGACTATTAGAGATGTGCTTCTGAACACAAATGACTCCATGCAACCCTTTAAAGAAGTCAAACATCTGGGCATCACAAGACTTACAATACATAATTTCAGTACAACAGATGAAGGAGTCACCAGTCTATTGAAGGTTATGGATGGATCCCCACTGTCCTATCTTGGTCTTGAGGATATGACCCTCAGAGGCATAGGCAGGTGGGAAAAGGCTAGAAAAACCCACTATGAACGCCTGCAAACCATCTTTATACAAAATGCTAAAATTGAAGAGTTCTACAGCTTCAGCAGTCTGTTCCCATTAGCATTTCTACTATTGAATTTCCAGAAGCTGTCACTGATCAACTCTACGTTTTTCGTTCTGCCCTGTGTGACAACTTTCCTCCTGATAAAAATCCAGTATTTGGATTTCAGCCAAAACCTACTGTCAGACCTGACGATGCGGGAAACTTTATGTTATGGTTTAGGTATTATGGTCCACCTCAACACCCTCAATGTGAGCTATAACTCCTTAAAGTCTCTTCAGCTTATGTCCAAACTGGTGACACGTCTGAGGAAGCTGACATTTCTGGACATCAGTCACAATGACTTTAGGAGAATGCCTCAGAAGTGTGATTGGCCTGAAAGCCTAAGGTTTCTGAACTTGTCTGCCACAAAGCTCTATAGGGCAACACCATGCCTACCGGTGAGCTTAACCTCGCTGGATCTGAGTGAGAACGACCTGACAGTTTTCCACCTCAGCCTACCCAACCTTGTGGAGCTTAATCTTTCAGGAAACAGGTTCCTGCACTTCCCTGATGGAGGAAGGTTCCCCAGAGTCAATGTTCTACTCGTTCAGAGGAATACTCTGAATGTGTTCAACAAGAGTGACCTGATGAGCTTTAAACATCTGCAGTATTTGGAAGCTGGATTGAACAACTTTGTTTGCAGCTGTGAGTTTGTGACATTTTTTAAGGGTGATGTCGACCACCTGGTGACGCTCAGGGACGGTCACGATAATTACGTATGTGACtctccattccctttaagaggtcAGACCGTGGACAGTGCTCAGTTATCGGTCTTTGAGTGTCACATGATCCCTGCGGTCTCCATTCTCTGCTCGATGATCGTCCTCGCTCTAGTGCTTGTTGGTGTGACCTGTCACAAGCTCCATGTGTTATGGTACCTGAAAATGACGGCTGCATGGTTACGAGCAAAGCGAAAGCCAGCGGTGCACAGAGCGAGAGAAAATCTTCGTTATGACGCCTTTGTTTCGTACAGTCAGCGAGACGCAGAGTGGGTTGAAGAAATCCTTGTTCCAAAGCTAGAAAGTGCTCAGCCTCCCTTCGCCCTCTGTCTGCATGAGCGAGACTTCCGTCCAGGCCGTTGGATTGTGGACAATATAATCGACTCTATTGAGAAGAGCCACCGCACTCTGTTCGTTCTGTCCCAACACTTCGTCACCAGCGAGTGGTGCCGCTACGAGCTCGACTTTTCACATTTCCGAATCGTCGATGAGCACAACGACTCTGCTGTCCTGATCCTGCTGGAGCCAATCGCAAAACAGACCATTCCCAAGCGCTTCTGTAAGCTACGCAAAATAATGAACTCCAAGACCTACCTGGAGTGGCCTCAGGAGgaagaaagaagagaggaaTTCTGGTCTAATCTGCAAGCTGCACTGAAAAGGGAGGATTCCTGAACCTTCAGTGAGAGTTCAAAAAGGTTTAACTGTCAATTTGTacagttaagataaaatatggaCAACAAATGAGGAAGGTTTTGTAGATGTGTGAAAATGTGGTTACAGACTTGAGATTctgaaggagattcaccttccatcaagacaatgaccctaaacatacagccaaatCTACAGTAATAGAATAGTTtaaatcaaagaatattcaggtgttagaatggcccagtcaaagtcctgacctaaatcccattgagcttctgtgacAAGACATAAAAACTGCCATTTACAGATGCTCTGCAAATAACCTGTCTAAGCTTATCGGATACGTAgttttttggttcccaaaattttttggagaCGAAGTGTTTCTGGTTCCCATGGGGTAACATTTTTTGGCAGGGGTGCCAAAttaggcacaacacctgttttttcataatttttcagAGAAAACGTTTTTTccgttcccaaaatttttcagaGACAATGTTTTTCGGTTCCCAACATTTTTTCAAAATCTTTGagagacaaagttttttcggtTTCCAACATTTTTTCAAAATCTTTCAGAGACGAAGTTTTTTCGGTTCCCATGGGGTAGTATTTCTTGGCAGGGGTGTCAAATTTGGCATGacacctgttttttcaatttttttcagagacAAAGCTTTTTCTGTTCCCAAAATCTTTCAGAGACGAAGTTTTTTCGGTTCCCATGGGGTAGTATTTCTTGGCAGGGGTGTCAAATTTGGCATGacacctgttttttcaatttttttcagagacGAAGTTTTTTCGGTTCCCAAAATCTTTCAGAGACaaactttttttctatatttttcggAGACAAAGTTGTttcagttgctaacattttttggAGATGAAGTTTTTTCGTTTCACAAGTTTTTCTGATTCCCACGGGGTAGCATTTTTTGGCAggggtgccaaatttggcatgacacctgttttttcagttcccaaaatttttggaGATTAAGTTTTTTCCGTTCGCAACATTTTTTCAAAATCTTTCAGAGAGGAATTTTTTTCCGGTTCCCATGGGGTAGTATTTTTTGGCAGGGGTGCGAAATTTGGCATgacacctgtttttttcaaacatttttttccgtTCCCAACATTCTTTCAAAATCTTTCggaaacaatgtttttttccgGTTCGCAACATTTTTTGAAGTTGaacattttttgtttcacaACATTTTTTGAGATTGACTGGCTGAGTTATTTTTCAAAGAACAACAAGGAGAAATCTCggtctctagatgtgcaaagctggtagagacaaaagCCAAAACACTTGCAGCTGTAACTGCAGGAAAAGGTGGTTCTTGTTTGTACTGATATAGGGGGGGGGCTAAATACTTTTCACGTCACACATTTCAACCACCTTAATGGTGGTTAAAACTTAGTGTTAAAACTTTGTGATTATGTGATTATCTAAGTGTTGTTTGATTACTGATATAAATGGAAATGTTTATGGTTAGTTGATGCCTTCATACTAATGTAAGTAAGCTATTAGAGTACAGCCACAGTACAGAGATGAGTCATCCTCACCTTTAACCACAATGActagtttatttaaatgttgtttattatACATGCTTATTTTAAGTGCAAAATGTCTGACAAACAGACCAGGCAACAACTCAGAGCTTTGCTATAACTGTGTTCCTCTatccaaaaatacataaaccttccagcaagacaatgaccctaaacatacagccagagctacagtggaatgattcagatcaaagaatattcatgtgttaaaatTACCCAGTCAATGTCCTGACCTAAATACATTGA

Function

GO: NA

KEGG:

id description
K10159 TLR2, CD282; toll-like receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142943 lncRNA upstream 30915 23179282 ~ 23251816 (+) True G105804
TU142941 lncRNA upstream 47679 23178637 ~ 23235052 (+) True G105803
TU142940 lncRNA upstream 127943 23154435 ~ 23154788 (+) True G105802
TU142939 lncRNA upstream 129919 23152578 ~ 23152812 (+) True G105801
TU142934 lncRNA upstream 140830 23141394 ~ 23141901 (+) True G105796
TU143025 lncRNA downstream 103805 23390733 ~ 23397862 (+) True G105872
TU143036 lncRNA downstream 124355 23411283 ~ 23412044 (+) True G105879
TU143048 lncRNA downstream 158946 23445874 ~ 23453226 (+) True G105891
TU143074 lncRNA downstream 207147 23494075 ~ 23496556 (+) True G105906
TU143125 lncRNA downstream 293227 23580155 ~ 23583983 (+) False G105940
XM_007260264.3 mRNA upstream 462635 22810079 ~ 22820096 (+) True LOC103038624
XM_022674898.1 mRNA upstream 508524 22762438 ~ 22774207 (+) True LOC103039247
XM_022674896.1 mRNA upstream 593643 22671713 ~ 22689088 (+) False LOC103041008
XM_022674897.1 mRNA upstream 593643 22672164 ~ 22689088 (+) True LOC103041008
XM_022674893.1 mRNA upstream 651017 22619030 ~ 22631714 (+) True LOC103042343
XM_022674906.1 mRNA downstream 5265 23292193 ~ 23305156 (+) True LOC103044794
XM_022674909.1 mRNA downstream 26704 23313632 ~ 23373618 (+) False prkcb
XM_022674908.1 mRNA downstream 26706 23313634 ~ 23390445 (+) False prkcb
XM_022674907.1 mRNA downstream 26715 23313643 ~ 23380719 (+) True prkcb
XM_007260282.2 mRNA downstream 113343 23400271 ~ 23410018 (+) True cacng3
XR_002650601.1 other upstream 462635 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 1914478 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 2253741 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 2289919 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 4359528 18919060 ~ 18923203 (+) True G104656
TU143216 other downstream 628707 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 700279 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 1124280 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 2074816 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 2074816 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile