RNA id: XM_015608321.2


Basic Information

Item Value
RNA id XM_015608321.2
length 4485
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC103036216
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16790748 ~ 16798890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTACAACCCTGGTGCTCCGAATGTAAAGTCTTCATCTATTGGTTTAACCATATAATACGGTTTAACCGTACTGCCACATAGCATATGGGTGGTTCATGATTCAGGAACTGAAATGTGTGTTCtaatggtgtgtgtttttttttagactgaAGCAGCATCAGACTGAGTACATCAGTGATGAGCAGATCTTCAGTACGGCAGTCCTACTTTAACCCAAAGTGCTGCATGcggtcttttttttaaaagCTCCGCTTTATAAttgctgaagtttcatattttgctggCTGCAGGAATCACAAACCCGGCTGGTTGGATACTCTCAGAAACCAGTGGGAGGGTCCCACTGTAACAGAATTTAAAGAAGTCGTTAGCTTCTAGTGTGAACAGAAACATATGTGACCTGAGGAAGTCAGGGGAAAACACAAGAATATCATCAAGATCATATGAAGAGCCGGGCCAAGACAAGACATCCTATTGAAGGCTTTACCTGCAACCTAACAATTATGTAAAGAACCAATAtttctttggaaaaaaaacttggacAATTCTCCTTACAACCCAATATGTCGGTTTTTATACTGGTGTCATTTTACCTCCACGCCACTGTGGTGCAAGGCTTCTTTGTGAAaaactgtaacataaaagcaaTTCCAACACACTCAACAAACTTTGTGGCTCTATGCAATAAACAGCGCCTTAGCACCGTACCAGAGAACTTACCCCACCACATAAAAGGACTGGATATATGTCAAAATAACATATCAAAGATAAAGAGCAATGATTTGGTATATTTGTCACATCTTAAATATCTGAATGTATCACACAATGTGCTTCAGGAGGTGGAGGATGGAGCGTTCAGGAGTTTGGAGGAATTGCAAGGTCTGAATCTTGCCTTCAACAGACTTACCACTATCCAAGGGTCATTCTTTCAAAATCTGCATAACCTCACTGTTCTTCGCCTTGACAAAAACTCCCTCAGAAGCATCAGTGCCTCCGCCTTTGTTCCTCTTAAGAGTTTGGTGATGGTGAATTTGTCTGGAAATCATCTACAGAACATAGAAAGACTGCAGCCACTTTTCATGTTACCCAAACTTATGCGCGTGCACATAGGAAGCAATGGAATAACCTCTTTTCAATCACTGAAAATATCAAACACATCCTTAAATCTGAAAGCCTTAGACTTGTCCTGGAATCCTTTGCAAGTCTTCAGCCTCACACAGGATGTCTTCCCTCAGCTTGAGATGATAGACCTGGCTTTTATTAATGAAAGCATGAGATGGGATGTACAGGACAAAAATTATCTGCAAAATGTTTTCAAACTGAACCTAAGTGGGATACACATGGCAACAGAAGATATCACAGCAGTGCTACAAATGCTTAACTCTTCACTGACTTACCTAAAAATTGAATACATGGGAAAAATTAAAGCACAGTCACTCATTAAGGCTGCTTGTCGGATTGACTCTTTAACAGTCTTTCGCTTGCAAGGAAACAACCTAAACTCTATATCAGATCAAGAGTTTAGATTATGCAAACAGCTCACTCTACTGGACTTGCCTAGAAACAATCTCATAAGTATATCAAGTTTAGCATTTTCATCACTTAAAAATCTCAGTAAACTAATACTGTGTCATAACAAGCTAAAAAGTGTTCCTATTGCCATGAGAAATATATCCACACTGGAGACCATAGACCTGAGCTACAATTCCATAAAAGAGTTAAAATGTGTAGATTTTGCAAATCTTAAAAAATTATCAAAACTTCACATTTACAGAAATCCTTTGCATACTGTGGAACTGTGTGCTTTTCAAAATCTGAACAACTTACAAAGCTTGATAATGAGTACAGAAATATTCACCCTAAAAGGTTATTTTACGTCAGGAGTCCAGAAATTAGAATTGCTTGATTTGAGTCAAAATAAGCTAAATTCCATTAATAAAGGAGATTTTAGATGTTTGGGCTATCtgagatatttatatttacaagaTAACCAGATTACATATATCGAACCAGGCGCATTTGAAGGACTAACAAACTTAACTGTACTGAGCCTGCAATCAAACAAGATCACACAGAGCTCAATAAgactttctgttttttctggACTACCAAACTTATTGTATCTTTGGTTGAACAACAACTACATTTCTTATTCCACCCAAACTAGCCTTAGAGAACCACCTTTTGCTTCTCTTCCACACTTGGAGGTGCTAGGGATTTACAGTCAACACCATAAAGGAATGGAAAACATTCCTTTAAACTTTTTGCAGGGATTGACCTCTTTAAATTTGCTTTGGGCTGGAAGTCTTGGCATAACATCCCTACATCCTCACACATTTAAATACACTCCTGGTCTAAGGTTCTTAGATCTGAGCAAAAATGAGTTTTCACTACTCTCTCCAGAAATATTTTGGCCAATCAAACAACTCTACAGGCTTGTCATGGTCCAAACCGGCTTGCAATCCATTGACTTCCTTGTGCCAGCCAATCTTTCTGAAATACGTCTCTTGTTTGTAAGACACAATGCCATATCGGTTGTCAACAAGACTGTAATCGACTTCCTTTCAAAACTGATGTACCTTGACCTTCaagaaaatgcattttcatGTGACTGTACCAATGCATGGTTCATTAACTGGACAATCAATGGCAAAGAAACACAAGTTCTAAATGCAGACAAGTTCCAGTGCAACTACCCTGTAGACCTCAGAGGGAAAAAACTCATGAATCTCGATGTGAACTCATGCAGTGTTGAtgttggttttatttgttttatctcCACTAGTGCTTTAGTTCTTTTGACACTAGTCACTACTTTCTTTTACAACTTCTTGAAGTGGCAGGTCATTTATACATACTACCTTTTCCTGTCCTTCCTCTATGACAGCAAGCATCAAAGAAAGCAAGAGACAAATGGCTTCCAGTATGATGCTTTTGTTTCCTACAACACCCATGATGAACCCTGGGTGATGGAAGAGCTGTTATCAAAGCTGGAGGGAGAGCAGGGCTGGAGGTTGTGTTTGCACCACAGAGACTTCCAGCCAGGTAAACCAATCGTGGATAACATTGTGGATGGAATCTACAGCAGCCGTAAGACCATCTGTGTGATCAGTCGCCACTACCTGGAGAGTGAGTGGTGTTCCAGAGAAATCCAGGTGGCCAGTTTTCGACTCTTTGACGAGAAGAAGGACGTTCTTATTTTGGTGTTCCTGGAAGACATTCCAAACTCTGAGTTGTCTCCATATTACAGAATGAGAAGACTAATAAAGAAGCGCACCTACCTTAAGTGGCCCAAACTAGGAAAGGATACTCAGTACTTCTGGCAGAAGCTGAGAGCCGCCTTGGAAACCAGGGGAAGTTCAGATGAGAATAATAGTGCATTGCAGTCAGCCCAGTAGTTATAAACCGTAGGGAGTAAAAGTTTTCAATTCAAATGGAACTTCAAACTGCGTAGGAAATAGTAAAGTAAAGATGCTTTCATGTTGAATGCGGTAGCTGCACCACTGTGCACTGAACCCCATTGGGTCCAATTGTTTCTTCGCCACCAGGGCAGTGTGGATTGCGGTTTGTTTCCATGCCCATGCCATGCCACTGCCATGCTACCGCTTGCTGGTTCAACTATGACTGCATGCCAAGCCGTAGTGCAGCAGAAAATGCATGACTTGAACTCATGCGACCAAGGAAAAATTGTAGTCCAAACAAGAAAAATCATGGGCGAGAGATACTAGGAGGAAGACAAAGATGCTGTTGCTCGcaccaaacaccaaaacacTGGTCACAGACGTGACATGTTTTCAAAAAACCTCACAATTATTAGCAAGCAATCCTCTGCGTCAGCAATAGCATCGAACAGAGCAGAACGAAAAGCGGAACATCCCTGGCAATGTGAAAAAATACCTTAATGGTTTATCAATGTATAGGTACATGTACAAagtttactgtacattttccATCATGTGTCTTGGGGTTAAACCAACTGGCTCTTATCACAAACAAAATACAACGCATTTAAAACATGTGGCAAatctatttaattatttataaaatgacATTTATTTCCCTATTACATTATTGGTTACATTTACACAGCAGATTAACGTAGCCCAAAAAAGTTCCAGACCAATATCTGAACCAATGTTCATGTATTGAATGAGTATAACAGACTGCAGTCATAATACTTTTATTACTGCATATAAATATGTGCTAATTTAATAGATACAGGAGTCACAAGCATAAGCATTTGCTCCTGTACCATTATGTGCAGCGCCTGCATGCACCTGCAAATCGTAATTGAAAATGTCAGATTCAATTTGTTCCTTGTCATTTACACAGCAATGCAGATAACATGCATGTGTcgcatattttaaaaaataattcacatATTCATacagagataaataaaaacaagattAGACACAGATatgttatttctttttataattattcAATTGGGTGTCTTAATTTTGTTCACATGATTGGATGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140633 lncRNA upstream 103375 16682740 ~ 16687373 (+) True G104082
TU140537 lncRNA upstream 230767 16555694 ~ 16559981 (+) False LOC103037450
TU140538 lncRNA upstream 230767 16555694 ~ 16559981 (+) False LOC103037450
TU140512 lncRNA upstream 244738 16544256 ~ 16546010 (+) True G104001
XR_002650593.1 lncRNA upstream 353116 16433809 ~ 16437632 (+) True LOC111193544
TU140707 lncRNA downstream 62098 16860988 ~ 16861202 (+) True G104144
TU140723 lncRNA downstream 128334 16927224 ~ 16934483 (+) True G104151
TU140739 lncRNA downstream 247882 17046772 ~ 17047740 (+) True G104162
TU140767 lncRNA downstream 335152 17134042 ~ 17138965 (+) False LOC103031769
TU140772 lncRNA downstream 383406 17182296 ~ 17182538 (+) True G104177
XM_022674782.1 mRNA upstream 128403 16628689 ~ 16662345 (+) True LOC111188171
XM_007259054.3 mRNA upstream 165164 16611601 ~ 16625584 (+) False LOC103036820
XM_015608317.2 mRNA upstream 165164 16611602 ~ 16625584 (+) True LOC103036820
XM_022675042.1 mRNA upstream 189713 16576843 ~ 16601035 (+) True LOC103037127
XM_022674781.1 mRNA upstream 216315 16555748 ~ 16574433 (+) True LOC103037450
XM_007259049.3 mRNA downstream 5018 16803908 ~ 16816495 (+) True LOC103035380
XM_007259048.3 mRNA downstream 89496 16888386 ~ 16894592 (+) True LOC103035065
XM_007259046.3 mRNA downstream 110758 16909648 ~ 17020202 (+) False vangl1
XM_007259047.3 mRNA downstream 112304 16911194 ~ 17020202 (+) True vangl1
XM_022674787.1 mRNA downstream 250539 17049429 ~ 17060160 (+) True poglut1
TU140514 other upstream 282971 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 332539 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 2098549 14691043 ~ 14692199 (+) True G103561
TU139970 other upstream 2171666 14618635 ~ 14619082 (+) True G103551
TU139893 other upstream 2529209 14260625 ~ 14261539 (+) True G103490
TU140710 other downstream 89506 16888396 ~ 16893723 (+) False LOC103035065
TU140760 other downstream 320957 17119847 ~ 17127310 (+) False LOC103031769
TU141369 other downstream 2120170 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 4190383 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 4220148 21019038 ~ 21028990 (+) True G105312

Expression Profile