RNA id: XM_022674356.1


Basic Information

Item Value
RNA id XM_022674356.1
length 5667
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC111193458
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22509446 ~ 22517576 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCGCTTTAAAGCCagtaaaaaaaggaagaaggagaaagaaaaagacaagtCAGGAAATAAGCCAACCTACATGATCCTTAGAATAGGTGGAAACAAACAAGCAGAGAAGAAAACGGGGTTCTTTAAAGGTCTTTTTGGGAAAAAGAACGCAGGAGATGGGGGTAATTTCAAGTACCGGAGTACAGTAATGGGCAAAATTGCAGGGGCAACAAACTGGCTTACAAAGAAGTTCCTCTCAAccaaaagaaaacagagaaccCTTGGCAGGGGTCAGGCCGGCTGGGGCCAGTCGAACAGCAAGCGATTTCCTGGGGGTAGTCAACAGGCGAGCATGAGAGGAGCTCGTGGGTTTGACAATTATGGGTACGAACAAGATTTTGATGGATATGACTACAATAACCAGGGTAGAGTAGAAAGAGGTGCATTCAACAGACAGTCAATCCATAGACAACCAAACAGATATGAGGCTCAGTTTGCTACTGTGCAGGGGCATGCACAGCACTATGAACAGTATGAAGAAACAGCTGACTATTATGACATACCATCTCAGGATCAAGGCTATTATGATTTAGAAGAAGATGGATACTATCAAACACAAATGGGCATGCAGAACGGGGATATGTATTATGACGATGGTATGGGTTATGATAACCCATATTCTGCACAAAATCAGATGGCCTATTACCCAGAGGAGATGGGATACTATGGGGAACAGCAATCAATGGACCCGTATTATGATAATGGAATGGAATACTATGATGAGAGCCAGTATCTAATGGAGGATGTGTATGACCCTTACGGAAATGAAATGGAGTTCTATGACGATGGTCAGTTTGATTATTATGACGACTCTCAGGGTTTCTACGATGATCCATATGGTGTGGTTGGCCCAGATGATTTATACATGGATCCATACAGGAATTATGAAGATCCATATCTACAGGACTTCCAGGTTAATTACAGTGAATCAGGAGTTCCCCCACATCTTGAGTCTGCCTATAACATGTACCAACCATATGGTTATGGTATGCAAGATATAATGGATAGTGGGGGGGTTGATGCGCTGTATGGTGATGAGTTTGGTGGTGTCCCCATGGAGCCAGTTGTACTTCAAGGGGACATGTTTCGAGTTCCAAGACCTCAAGTGAAGCTTTTTGGTAAAGATAAGATAGATGTGGAGCTGCCACCACCACCCCCACAATATGAGTTTGAAGAGATGTCAGAGATTCAGTATGAAAATGATCCATATATACCTCAAGGTCCTATGGTTGGGGGGTTTCCTCCCACAATGCAACCACAAGACATGCTCTATCCAGGAGAGCCCCAGATCCCAACACCAACTGCCATGTTAATTAAGCAGGCTAACAGTCCTCAGGGAATGATGAGCCCTACCATGGCACGGTCTCCACATGTGTCACCAATGGCTCAAAGTGGTGCTTATCCTCCATCTCCTACACCAAGCAGGAGGTCCATGGGGATGATGGGCTCTACTGCTCAGAGGCCAATGTCCCTTATGTCAGCTCAAGGCCCCATGCCTCCCATGGCAGATCCAGGTCCCATTTCCTCTATGATGGCACCAGGTTCTATGTACCCTATGGCAGCACAAAGGCCTATGTCCCCTATGGCAGCACATAGATCCATGTCCCCTATGGGAGCACAAATGCCCATGTCCCCTATGGCAGCACAAATGCCCATGTCCCCTATGGCAGCACAAATGCCCATGTCCCCTATGGCAGCACAAATGCCAATGTCCCCTATGGCAGCCCAAATGCCCATGTCCCCTATGGCAGCCCAAATGCCCATGTCCCCTATGGCAGCACCAGGTCCTATGTCCCCTATGGGAGCACTCGGAGGATTTAGGGAGCCATTAATGGATGCAAGACTTTCTCCTGTACCGATGCGACGACAAATCCCTCCTGGATCTCCACAACTCTCCATGCACCCTTCTGGAGGATTTCCTGGAAGACGAAGCCCCTCACCACAACCCTCTATACGTCAATTTGGAGCTAGTGGAATGCCCCCTTCTCCAACACTAAGCAGAGGAATGCCATCGCAAGTTCAACGTCCCGCTTCTCCTTTTGGACGAAAAAGAGGAAGTCCACCTGCCTCCCCAGCACTCTCCAGAGGTTTCCAACCTCAAAGTTCATTCATAGAGGCAACACCATCCCCCCAGCCTATGCCTCACCATATGGCCCCACGAGGAGTATCTCCTCGTGCTAGCCCTCCTGCTTCCCCCCGTGCTTCCATCCGCAGACGAAGTCCACCACTTTCGCCACGTGCTTCAACAAGGAGAACCAGTCCACCTTCTTCCCCTACAATGGCTCGTCAACCATTTGGTGCCAGGAAGCTTCAGGGTTCACCCTCTCCTCCTAGGCGAGCAAGTCCTCCACCCTCCCCACAGATGAGCATGCATCCTTTGGCCAGTCTTCAGCAGAGGGATCCTGGTAGGCCACAATCCCCATTTGTTGCTCAGAGAGCATCACCTACTGCTAACAGAAGAAGCTTGGCAGTGGAATCTGAATCTGCACGACCACCATCTCCAAGTGGACGTAGACCAccctctccatctctgtctcGAAGGTCTACCCGTCTTGCAAGGGATCCACCTCCTTTTGGATCCCCTGGTGGCCGACTACGTGGAATGGGGCGTCCCAACATTCCTATGGGAGCTGTAAAACCCTCTCCTGGTCGAATGAGTCGGCGTGGTCCTCCAACACAAAATGTACCTCCTTTTAGAACCTCCATACGCAGCAACAGGTCAGTCATGCCTCAGGACTTTACATCCTCCCCACAGCTCTCAGGCCAACACCCTGGGTTTGCAATGAGGGAGCAGAGGCGCTTTATTCCCCCAGGTACTCCAGGCCCCACAAGGAACCCACAAAGACCAGTTGGTCGTGGCCGTCCTCTTATGGCCAGACAGTCCATGAGGCAGGCACCTCAATCACGACAACCTTCTCTAAAACGCATGGGTCCTCCATCACCCCAACCTTCTGTTAGGCATCTTTCTAGACCAACGTCTCCTCACCCCTCAATAAAACATGGCTCACCATTACCAATGCGTGCCCCATCTCCTCGCGCACCACTTTCCCCTCTCCTCTCAGGTGGTTTACCAAATTTGCAGATGTCTGGAGTACCATATTCATCTCCCTACCCTGTTGGGGTGGAGCCAATACTTGTGGGACCTGACCAATTTATAAATGTGCCACAATCTCCTGTGCTCACAGACACTCTTCAAAACCAAATGATGCCTCAAGGCTATACCTCACCAATCCAGCAGCCCATGGCATCATATCCTCCTGAGATCACAGGTATAGAGCAGTTTCCTGGGCAGCCACTTCCACCACATTTATCAAATGCTTTACAAAATCAAGCTTTACGTGAGGCTTCCTATACTTCAGTACTGCAACCTGGACTAGCTCCACAAGCTCAAGAAATTCCTATAATACAGCAGTATCCAGAGCAGATTGCATCTCCTGTTTTATCAAATGCTTTGCAAAACCCTCAGGTCCGTGGAGCCTCATACACTTCTTCCCTGCAAAGACCAGGCTCTCCATATGCAGAAGCCGTACAGCTTCCTGGTCAGCCATCATCCCCAATGCTTTCTAATGCTTTAGAAACCTCTAGTCTTCGTAGTGCTTCATTTGTTTCACCACTGCAACCACCCATATCCCCATATGCTCCCGAAATGGAGGCTTTTCCCGGTCAGCCTGTGTCTCCAGTACTGTCATCAGCTATTCAAAATCCTTACCTTCGTAATGCCTCATACACATCACCACTACAGATGCCTCCTTCTCCATATTCACAGGTGATGACAGAATATGATTACATAGAGGACCCAGGTCCTGGTCCTCAACTCACAAATGCTCTACAAAACCAAAACATCCGAAATGCGTCATACCGAACACACTTACGAAGGAGAGGATCAAGATTGCCCCCTGGTTATGGTCCAGGGGGATCACCAGCTCTGTCAAATGCTTTACAAAACCAACAAATCCGCAATGCATCTTATCAAACACAGCTAGCTTATCAAAGGGCCAACTACCCCTATGCTCCCATGGCTGGTTACGGTCAGGATCCTAGGAAGTCTCCTATTCTGACAGATGCTCTACATAATCCTCAAGTCCGTGGTGCCACCTACCGCCTCCCAGATGGCACACTGGTGCATGGAAATGAAGTGATACCTCCATCCACCTCACCAATGCTTTCGAATGCACTACAGAATCAACAGCTACGACAGGCGTCATACAGACTTTCAGATGGAACTGTAATAGGCGTACATCCCCAGCAATCCCTCTCGCCCAACCTTTCGAATGCCTTACAGAACCCAAACTTAAGACAAGCTTCTTATAGACTCCCAGATGGAAGTATAATTATGGACCCCCGTCAACAACAGCCCTCATCTCCAAATCTGTCAAATGCTTTGCAAAATCCAAACCTAAGAAATGCTTCCTACAGACTTCCAGATGGGACAATAATTATGGCAGATCAGCAGCCAACATCTCCCAACTTGTCACGAGCACTTAGAAATGAGAACATTCGAAAGGCATCTTATAGGCTGCCTGATGGGACAATAGTGTTTGCAGAGCAAGAAGTTGAGCCAACTTCTCCACTTTTGTCTAATGCACTTCAAAATCCAAACCTCAGAAATGCATCTTATAGATTGCCTGATGGCTCCATCATTTATGGACCGCCAAAACCGACCTCCCCAAATTTATCAAAAGCTCTTCAGAACCAACAAATGCGAAATGCTAATTATAGATTACCTGATGGTTCTATTATAACCACACAGGTACCAACCTCCCCAAATTTAGGAAATGCCCTTCAGAATCAAGCCATTCGTAGTGCTGCCTACAGGCTACCTGATGGCTCAATAATCAGTGCTCATCCTGTTCGGCAGCCAAATTTGTCTAGTGCTCTCAAAAATATAGATCTCAAAAGTGCTTCCTATAGGCTTCCAGATGGATCTGTCATTTCCCCAAGTGCTATGTATCAGCCAAGAAGTCCCAACATTTTAAGTGCCTTGATGAATGATGACCTTCGCAATGCCACATACACACTACCCGATGGCTCTGTTATATCAGCAGATCCTCGTAGGCATAGAAATCCACAACTTTCACAAGCCCTGTTAAACCAAAATCTCAGAAATGCTAAATACCGTTTACCTGACAGATCCATCCTCACAAAAGGCTTTGCAACCTCACCTCACCTCTCTGATGCTCTGATGAATGCTGAACTCAAAAAGGCCAGTTATCAGTTGCCTTCAGGAATGTGCACTGTGACAAAATCTGGCTTGATCATTGGGCCAGATGGCAGGTATGCAGTGGTAACCCCACAGAGGAAAGGTCCTGAGGACCACTGGGCccagaatgagagagaaggaCAAAGCGCAGAAGATATGTGGGCATCAGAGAAGGTTCTGCCTCATGGTACAGTGCAGAATCTTATCAAGTGGTCTGTTTATCGTGATGACAAAATGGACCACCTTACACCCCCACCCTTTGTCCCTGGGTCCAAGGAGGCACAAGTACACTGGGTCCCAGATCGGCAAGGCGAGCCCACTGGTCACTGGTATGACAAGATGTACTCTGTAAGGAGTATGCCCACTATGAGATAccgagagaaaagagaaggtgATGGACTTGAGGATATGACACAGTTGGCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142690 lncRNA upstream 18704 22488238 ~ 22490742 (+) False G105581
TU142692 lncRNA upstream 18704 22488238 ~ 22490742 (+) False G105581
TU142693 lncRNA upstream 18704 22488238 ~ 22490742 (+) True G105581
TU142689 lncRNA upstream 42647 22409426 ~ 22466799 (+) True G105580
TU142655 lncRNA upstream 252869 22256272 ~ 22256577 (+) False LOC103046939
TU142733 lncRNA downstream 23597 22541173 ~ 22542665 (+) False LOC103045705
TU142768 lncRNA downstream 174075 22691651 ~ 22692463 (+) True G105645
TU142777 lncRNA downstream 188924 22706500 ~ 22706805 (+) True G105654
TU142793 lncRNA downstream 261694 22779270 ~ 22791181 (+) True G105668
TU142896 lncRNA downstream 407541 22925117 ~ 22928356 (+) True G105760
XM_022674890.1 mRNA upstream 29018 22313226 ~ 22480428 (+) True LOC103046323
XM_022674355.1 mRNA upstream 225993 22255085 ~ 22283453 (+) True LOC103046939
XM_022674390.1 mRNA upstream 575051 21926349 ~ 21934395 (+) True LOC103035679
XM_015602212.2 mRNA upstream 893010 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA upstream 893010 21611572 ~ 21616436 (+) False LOC103037976
XM_022674357.1 mRNA downstream 7681 22525257 ~ 22588961 (+) True LOC103045705
XM_007260273.3 mRNA downstream 75062 22592638 ~ 22599854 (+) True alkbh5
XM_022674892.1 mRNA downstream 83634 22601210 ~ 22616958 (+) False LOC103042026
XM_007260274.2 mRNA downstream 83635 22601211 ~ 22616958 (+) True LOC103042026
XM_022674891.1 mRNA downstream 86351 22603927 ~ 22616958 (+) False LOC103042026
TU142415 other upstream 1141193 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 1480456 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 1516634 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 3586243 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 5382136 17119847 ~ 17127310 (+) False LOC103031769
XR_002650601.1 other downstream 292503 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 1398059 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 1469631 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 1893632 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 2844168 25361744 ~ 25369439 (+) True LOC111193563

Expression Profile