RNA id: XM_022674361.1


Basic Information

Item Value
RNA id XM_022674361.1
length 2112
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC103025458
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25423712 ~ 25449279 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGTGGAGATGTTGGAGTTACGTTTTAAACTAGTTGGAGCAGCTGCTCCTCTTGTTGCTGAAGCTGGTGAAGATCTGGTTCTGCCCTGTTCTCTCCAACCCAGCTTCAGTGCTGAGGGCGTGATCGTGGAGTGGATCAGACAGcatgagacagacagacaagttcATCTGTATGAAGATTATAAAGACAGAAATGATAATCAGATGGAGTCTTACAGAGGGagaacagctctgtttaaagaaGAACTGAAGAAAGGAAACGCCTCACTGAAACTCTCAGCACTCCAACCTTCTGATGATGGAGCTTACAAGTGTTTAATTAGATCATTCGACTGGTATGATGATGTGACTCTGTATGTTGAAGTTAAAGGAAAAGGATTTCATGGTTGGAAGATTGCCATtatctgcatttttgtttttgctgttattTTAACTGCCTTTATAGTATACATCTTAAAagATAAATATTCAAAAAAGCAGCTCTCTCCTACACAGTGCTCAGTTATAACCTACATGCGTCTCCACACCGAGAATCCCCGCAAAGAGCTGGACCTGAGCAAATTCAACACATCAGAGGAAGGATACAGGAGACTCATTCCAGCTGTATCAAACTGCAGGAAGGCTCAaTTAGCTGGCTGTAATCTCACTGAGCAGTCTATTGAAACCTTAAGTACAGCTCTACAGTCAGGAAGCTCcaccctgaaagagctggacctcagtaacaacaACCTCCAGGGATCAAGGATGGAGAAACTCTCTGCTGGACTAAAGAGTTcaaactgtaaactggagataCTCAGATTATCTACCTgtaaactcagtaaacactCATGCGAGTATCTGCAGTCAGTTTTACAGTCAGAAAAATCCTCACTGATAGAGCTGGACCTCACTAACAACAACCTGGAGGATTCAGGAATGGAGAaactctctgctggactgaagagttcacattGTAAACTGGAGATACTCAGACTAGCTTTGTGTAATCTTGGGGAACAGTCCTGTGAGAGTCTGGGATTAATTTTAAAACTGGAAACCTCCTCCCTGAAAGTGCTGGATCTCAGTAataatgacctgcaggattcaggagtggagaaACTCTGTTCTgaactgaagagttcacactgtaaactggagataCTCAGGTTATCTGGTTGTATGATCACAGAGAAAGGATGTTCATCTCTGGCGTCATCTTTGAGTTCAAACTTGAAAGAAATAGATCTGACCTACAATAACCCAGAAGGGTCTGGAGTGAAGGAGCTCTCTGCTAAACTGGAGGATCCACACTGCAATCTCAGCACACtcaggtatgtgtgtgtatgtgtactgTTTGTGTTTAAGACACTTTTAGTCAAATTAGAGAGCTTGATGAGTGAGAATATGCTTATTTGGCTTTCCACCATGAGAGCTCCATTACTTCTCCATTACTTCAAATGCACTACCATTGACTTGTACTACCAATACATACTGCTACTGTTTAACATTTCACATGAATGaatagtgtgaaaaaataaCCTGGAAGAGAGCAAGAGCGAGAGAATTATTAGACTAGTGGTCGACAATTTAATTTGCccgggaggaatgtaaacaaaagctcgaaAATAAGGCTGCAACATTGTTCTCACCAAGAAAATCTTACCCTCCTGCCATCTGTAAAAATCTAAGCCAAACACCTAATTAACGCTCCACATGGCTATTTTATTCAAAGTCAAGCTTGTAATGGGTGGATAcagacagaacaagaaaaagtgacCAGTTTTTGCAAACTGTGTACAACATTTTCTGGACCAAGAGTCAAGGTTGAGACCAAGGTTCCCAAAGGAACCTGAACAGATCCCATTCCCTCTTCAAACACTGCCtatcttttaaaatatatatcacataAGACTGAACATTAAACATCTAGGCTAGTAAGGTTtttaagtttaatgtttttatttgtaaaatcaAGAGATCAATAAACCAATATTTGTACTGTAAATTTAGATCTATGAACACagcaaattatataattttcctCTATTTTCTAACACACTGCTGCAGAGCAAGAGATTGTCCTCCCAAATATCATTTGCAGGAACTTCCTGTTGTTGCACCTGTAAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143502 lncRNA upstream 20800 25360085 ~ 25402912 (+) True G106255
XR_002650605.1 lncRNA upstream 21907 25400917 ~ 25401805 (+) True LOC103043670
TU143509 lncRNA upstream 54273 25361744 ~ 25369439 (+) False LOC111193563
TU143513 lncRNA upstream 54273 25361744 ~ 25369439 (+) False LOC111193563
XR_002650604.1 lncRNA upstream 59391 25361871 ~ 25364321 (+) False LOC111193563
TU143544 lncRNA downstream 2858 25452137 ~ 25542268 (+) True G106274
TU143542 lncRNA downstream 6841 25456120 ~ 25548983 (+) True G106273
TU143521 lncRNA downstream 9536 25458815 ~ 25556234 (+) False LOC111193565
TU143519 lncRNA downstream 13228 25462507 ~ 25570821 (+) False LOC111193565
TU143520 lncRNA downstream 13228 25462507 ~ 25570821 (+) False LOC111193565
XM_022674930.1 mRNA upstream 1454 25419540 ~ 25422258 (+) True LOC111193564
XM_015607967.2 mRNA upstream 37412 25382872 ~ 25386300 (+) True LOC103023109
XM_022674360.1 mRNA upstream 48880 25372806 ~ 25374832 (+) True LOC103022503
XM_007232254.3 mRNA upstream 321139 25076936 ~ 25102573 (+) True slitrk6
XM_022674918.1 mRNA upstream 1308251 23970691 ~ 24115461 (+) True gpc6
XM_022674362.1 mRNA downstream 35564 25484843 ~ 25519366 (+) True LOC111193460
XM_022674931.1 mRNA downstream 70392 25519671 ~ 25556012 (+) True LOC111193565
XM_007239760.3 mRNA downstream 290948 25740227 ~ 25759643 (+) True ube2f
XM_022674933.1 mRNA downstream 314568 25763847 ~ 26023673 (+) True LOC103038099
XM_022674393.1 mRNA downstream 626419 26075698 ~ 26078799 (+) True LOC111193484
TU143503 other upstream 54273 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 54273 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 1010614 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 1434120 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 1499941 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 2565237 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 2617073 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 3267323 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 4331047 29780326 ~ 29780927 (+) True G107117

Expression Profile