RNA id: XM_022674368.1


Basic Information

Item Value
RNA id XM_022674368.1
length 2450
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC103047315
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 27802084 ~ 27808084 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttttctCTTCAGCTACGTCAAACAGCACTTTTGAAGGCCTGGACAACCACGAGGGCGGAGTCTGCAGGACCAAGTCTATGAAGATGGTGCTGCGGGTCGGACAGAGTCCTGAATCAGTTCCTACGAAAGATCATTCCCCCAAACACTCGGATACCGACAACCAGAGCACCTTCAGCAAGGAGGATGAAGTCATCAGTAAAGCTgACCCAGTTCCAGAGAGCGGCGCCGATGGAAAGAGCGGCGAGTCCACGGGTCCATCCAGCTCAGAGATGGTTCTGTTCGCCGGCGTGGCCTCTGGAGTCGTGGTGCTCGTCCTCCTGCTCGTGGTCGGACTGGTGGTTCTGATTCGGCAGCGGCGACACCGTAAACACGCCGCCCAGTGCTCCGGCCCACTTCCCCTTCATACCCTTCCCAAACGAGGCAGCGGCGGCGCCAACAACAACGGCTCAGAGCCCAGCGACATCATCTTCCCCCTGCGCTCCTCCGACAGCATGTACTGCCCGCACTACGAGAAGGTCAGCGGGGACTACGGACATCCCGTCTACATCGTCCAGGAGATGCCGCCACAGAGTCCTGCCAACATCTACTACAAAGTTTGACAGGAACCGTAGGAACCGTTTCTCAGGAACTGTAGGGTTCAAACACTTGCCTCCTGAAATCATGGACATCTCGTTGTAACGGATGCTGTTGGAGGGAGAAGCCTGTTCTTCTGCACCAGTTGCTTGGTTCTCCAGAGTCCTGGTTCAAAGGAACGTTTTTACCTGGTCTTGCGAACCTGGTCTTTCAAGGTTTCCACTCTGGGAACtttgtggaggtggaggtgcaCGTATCTCTTCTCAAATCAAATCAGTGCTTTAGAACTGCCCTTTAGAAGGCAGGCTGAGGTgctaacttgttttttttgtgctcaGGGGAGAACATTGCAAGGTTCTCTAGGTATGAGAAAGACTTAAGAAGATCTAATCAGGGCGAAGATTGTGTGAGACCACAATGCTGGGGGGGGGGAGACAATCGCCCAGGTTTTTCACAGACTGTGTAgaatctttttatttaatttttctacCCAATTTAGCTGAGCCATTGAACCCTTTGGAGAAAgtgccagatccccagctctgatactcCAGCCAATGGATGCCTGGGACTCTTGaggaaaatgagagaaagagagagagagagagagagagagcagaacctAACCATCCattgagagagagcatggcgcCAATCCTGATTACTCTCTCgagctctggctgctgatgccaaatgAGCATGATGACCCTTAAACTTGCGACTAGTTGCGATTCAGTTTGACGCATCTCAATCTCAGACTCAATCAGTTTGGTTAAACGTTTCTTTTCTCAGAAGCAAATCTGAGATGGATGCTTTTAACCCGGAGAGAGAATGGTGCCAACTGCGCTTGCTTTCTCTTGCTCTGGCTGAAGAGTTGCAGTGAATGACCTGAGATTCAAACTCAAAATCAAGCATCCATTTCCACAACTAGAACCTTCAGACTTTAGGACTTTCATGTCATATTTGGGATATTCAATACACTTTCGATGCATCTCAGAGCTGGACGCTGCTAGACCtttgtatgtatgtactgtacaAAGTGTCACAAAGTGTTACGAAGTGTCACAAAGCTTCAGGAAGTGTCACAAAGTGTTACGAAGTGTTACAAAGCGTCAGGAAGTGTCACAAAGCGTCACAAAGGTTACAAAAGGACGTAAAGACTGTTCCTGCATCTCCAAGCTGGTCTAAAGGATGCACAACACATACCAAACTCCTGCTGATTCTCCTCCATATGCCGCTCCCGCGTCGGGGTGCGAGATTTTGCAGCTTCTTTAGGCCGCATGCGGTTCTCGCGCTCGCTTTGGCGGCTTGTCAAACGCTTCGTCGTGAAAGAAAAGCCAGGCTCGACACAAACCCTATCCTTCCCCAACACTCCCGCCcacccctttttttttgtttacttctgtAAATACTACCTAAAACttctttgtttgtatttttacgttttttttttctaaattatgtCTTAAGTTATGTTTTGTATGGATTCATTTTGGAATACTCTCGTGTTAACAAGAAGTCTGGAGATGAAGACGAACCAAGCCAGAAaggaggattaaaaaaaaagaaaaaacgctAAAAAAGACGCTAATGCCGCGGATTTGTATTACTCACGTACGCCGCGAGCAGCAGCAGCGATTGAACAAATAACAAATCTCAGCCTGATCTGTCCAAGTGTTGATTCGTTTGATTGTACACCCAGAGAATGTGCTGTTCCAGCTGGTGGGCGCTGAATGGATTATGATTGTTCGGGGCTGAATGGGCTCGTAATGGCAGCTCGCGCTGCGCGTTAGAGAGTGTTGTTTGGTAAATGCAGACGTTTGTAAGGTTTTGTACGGTTTGAATAAAGCTGGTGGCATATTGGTTTACAACTAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143955 lncRNA upstream 167874 27630943 ~ 27634210 (+) True G106572
TU143943 lncRNA upstream 177383 27583377 ~ 27624701 (+) True G106562
TU143945 lncRNA upstream 191470 27609381 ~ 27610614 (+) True G106564
TU143930 lncRNA upstream 230438 27571336 ~ 27571646 (+) True G106557
TU143928 lncRNA upstream 231893 27569987 ~ 27570191 (+) True G106555
TU144055 lncRNA downstream 18503 27826587 ~ 27826848 (+) True G106636
TU144066 lncRNA downstream 97701 27905785 ~ 27906285 (+) True G106644
TU144068 lncRNA downstream 98872 27906956 ~ 27907211 (+) True G106646
TU144070 lncRNA downstream 104222 27912306 ~ 27914261 (+) True G106648
TU144061 lncRNA downstream 107463 27915547 ~ 27918196 (+) True G106642
XM_022674943.1 mRNA upstream 33817 27759212 ~ 27768267 (+) True arglu1
XM_022674367.1 mRNA upstream 43987 27745088 ~ 27758097 (+) True LOC111193461
XM_022674942.1 mRNA upstream 62986 27729513 ~ 27739098 (+) True LOC103046391
XM_022674939.1 mRNA upstream 197853 27588049 ~ 27604231 (+) True atic
XM_022674395.1 mRNA upstream 1158874 26638967 ~ 26643210 (+) True LOC111193487
XM_007234822.2 mRNA downstream 82634 27890718 ~ 27905645 (+) True LOC103043862
XM_022674370.1 mRNA downstream 185915 27993999 ~ 27999852 (+) True LOC111193463
XM_022674372.1 mRNA downstream 881471 28689555 ~ 28692305 (+) True LOC111193464
XM_022674373.1 mRNA downstream 884760 28692844 ~ 28697096 (+) True LOC111193465
XM_022674374.1 mRNA downstream 893928 28702012 ~ 28702921 (+) True LOC111193466
TU143503 other upstream 2432645 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 2432645 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 3388986 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 3812492 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 3878313 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 206432 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 258268 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 908518 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 1972242 29780326 ~ 29780927 (+) True G107117

Expression Profile