RNA id: XM_022674373.1


Basic Information

Item Value
RNA id XM_022674373.1
length 1053
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC111193465
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28692844 ~ 28697096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCAGGAACAGCAGGAGTTTTTGGAGAGCCTTGTTTCCACGCTTCAAGACGGACAGCCGCTGGTATTACCCTCATTGATGTCTTCCCCCTGTGAATATGATGGGGAACACGGGACCTGTGAGGGCTTCATCATGCAGTGCTCCCTCTACCTCGACCATTTGTTGTGCCCTACCCTTCCAGAACTTATAAAGtcccagtctccatCCCCTGTCCCGTCTCCGTTCCAGGTCCTGTCCCCGTTtcatgtccagtctcagcccctgttCGGTCaaaataaaccaaCCACTAAGAGATACATATTAATTAATGACCAAAAGACCTGGCGTGAAGCTCAGAGCTACTGCAGAGAACATCACACAGATCTGGCCAGTGTGAGGAACGAGACTGAAAGACAGCAGATCACTGCTGCAGGAAATGGTGATCATTTCTGGATCGGCCTGTTTAAGGACTCCTGGAAGTGGTCAGATCAGAGTAACTCCTCATTCCGATACTGGAAATTTATGCAGCCAGATAATACTTATAATACAAAATGTGCTGCAGCTTCTGTGAATGACCAGGGTCAGTGGCATGATATAGGTTGTGAGGAACCGCACCCTTTCATCTGCCATGAGAATAAACTGATCTTGATCCAGCAGAATCTGAGCTGGAAAGGAGCTCTGAGATACTGCAGAGAGAATCATGTGGACCTGGTCTCAGTTCACTCTAAGGAGATCCAGCTCTGGGTGGAGGATGTGGCTCAGAATGCCTCCACTGATCATGTGTGGCTGGGTCTGCGTCACACCTGCACCCTCAGCCTCTGGTTCTGGATGAGTGGAGACTTTATCTGCTATGATAACTGGGCTCCGGGTAACGAGACAGAGGGAGAAGACTGCGATGATGCTCCAGAGGAAGAAGAGTGCAGTCCTGTAGAGAGAACCGGAGCGGTGCAGGCTAGAGGAGATCAGCAGTGGGTCAGCCTGCCTGAGAACCAGACTCTCAACTTCATCTGCATCAAATATGAAGaCTGAAACCAGGTGTGAAGCTTCTTCTGTCCTGGAATCAGCatctctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144230 lncRNA upstream 18908 28667659 ~ 28673936 (+) False G106760
TU144233 lncRNA upstream 18908 28667659 ~ 28673936 (+) False G106760
TU144232 lncRNA upstream 18908 28669733 ~ 28673936 (+) False G106760
TU144220 lncRNA upstream 18908 28670587 ~ 28673936 (+) True G106760
TU144226 lncRNA upstream 21751 28667114 ~ 28671093 (+) False G106760
TU144262 lncRNA downstream 8949 28706045 ~ 28707099 (+) False LOC103027743
TU144285 lncRNA downstream 25851 28722947 ~ 28724026 (+) False LOC103027743
TU144288 lncRNA downstream 29624 28726720 ~ 28727094 (+) True G106791
TU144289 lncRNA downstream 30190 28727286 ~ 28727720 (+) True G106792
TU144292 lncRNA downstream 37199 28734295 ~ 28734971 (+) True G106795
XM_022674372.1 mRNA upstream 539 28689555 ~ 28692305 (+) True LOC111193464
XM_022674370.1 mRNA upstream 692992 27993999 ~ 27999852 (+) True LOC111193463
XM_007234822.2 mRNA upstream 787199 27890718 ~ 27905645 (+) True LOC103043862
XM_022674368.1 mRNA upstream 884760 27802084 ~ 27808084 (+) True LOC103047315
XM_022674943.1 mRNA upstream 924577 27759212 ~ 27768267 (+) True arglu1
XM_022674374.1 mRNA downstream 4916 28702012 ~ 28702921 (+) True LOC111193466
XM_022674375.1 mRNA downstream 5971 28703067 ~ 28723826 (+) True LOC103027743
XM_022674952.1 mRNA downstream 88868 28785964 ~ 28791991 (+) True LOC111193571
XM_022674377.1 mRNA downstream 114728 28811824 ~ 28815508 (+) True LOC111193468
XM_022674951.1 mRNA downstream 144083 28841179 ~ 28865225 (+) False LOC111193570
TU144107 other upstream 625861 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 670797 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3323405 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 3323405 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 4279746 24411208 ~ 24413098 (+) True G106146
TU144257 other downstream 19506 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 1083230 29780326 ~ 29780927 (+) True G107117

Expression Profile