RNA id: XM_022674380.1


Basic Information

Item Value
RNA id XM_022674380.1
length 1093
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC111193471
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30540261 ~ 30547361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAAGCTTTTACACAGTATAGGACTGCATAATCATTCGTTTTGATCTCATTGCATTTATCCTGCTGTTTAAATATGTCGTACATGTttacaaatgacaaaaatattcgTTAAGAGATTGCTTACCTGTTTTGGATATCTCTTAGGTGCCCTCTGCTTCTGaaaatacaaactaaacaagATTTTGGCGCTAGAAAGTATAGATCCAACCGCAGCCGATGTTACAGAAGCATCCAATCACAGTCAAACTTGTTGATGGCTCATGCCATCATCCCGTCAGGACTTGCAAAACGTTTATTTTTTGCCTGAAAAATCATGGACGGTCAGCATGAAAAAGAACCCTGTTCCTCAGCAACTTCTGCTTCCAGTACTCGTCCAAAGAGGCTCCCAAAGCGTCAACAAAAGACCCAAATCTCAACAGATGAGCGAGACGCTTCTAACCTAGCCCCTACTGCAGTAGTGCTTCTTAACAAGGAGAAGCAAGAACTGAACCTTCTTAAGGAGAAGTTGGAATGGCAGAAGAAGAAGATTGAAGAACtggaagaagagagagatttCCTTCGTGGACAGTTGTCTGCCCTCACAGCAATGCAAGAAAGCATGGACAACAAAGTCACTGTGAATGATTCGGAAACCTCCAATACGTCATCCAtgtcctcctcttcctcatcctcatcctcgTCTTCAACCCCCAAGAAGCGCAAATCCAAAAAGAAGCACAGCAAGGCAGCCAAAAAAcacaagagagagcacaagacGTTTCGGCAGCGCGTACAAACACCGAGTGAAATTGTCTGCCGCTACAGATCCATCCTCAAGACCTTGCCAAAGACAAAGACCATGACCAAAGCGCTCCAGAAGCACGGCATTGACAGAAACACTGTGGTGTGCACTTCAGCGATTGGAGAGCTCGCTATTGCAGCTCCTGAGGTCTATGAGGAGACACTGGCCCAGAGGTCTACTGGAGAGACAGTGCTGGCATTTGCTAAGTGGTGTGAGGCTGCTATTCAGAAAGATgaagaattaaaagaaaaaatagaaatcatGAAAGCTAAGGGTACCCTCGTCCCCATGAGGAGAAACAAACCTGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144926 lncRNA upstream 11777 30493411 ~ 30528484 (+) True G107267
TU144928 lncRNA upstream 46555 30493001 ~ 30493706 (+) False G107267
TU144919 lncRNA upstream 75330 30401626 ~ 30464931 (+) True G107261
TU144768 lncRNA upstream 84491 30448327 ~ 30455770 (+) True G107128
TU144907 lncRNA upstream 341317 30198295 ~ 30198944 (+) True G107250
TU145013 lncRNA downstream 167819 30715180 ~ 30716606 (+) True G107342
TU145072 lncRNA downstream 185307 30732668 ~ 30732900 (+) True G107389
TU145077 lncRNA downstream 196316 30743677 ~ 30744047 (+) True G107394
TU145079 lncRNA downstream 198070 30745431 ~ 30745631 (+) True G107396
TU145080 lncRNA downstream 213309 30760670 ~ 30790277 (+) True G107397
XM_022674973.1 mRNA upstream 88660 29844100 ~ 30451601 (+) True ncam2
XM_022674975.1 mRNA upstream 88660 29844100 ~ 30451601 (+) False ncam2
XM_022674379.1 mRNA upstream 881839 29656537 ~ 29658422 (+) True LOC111193470
XM_022674967.1 mRNA upstream 952139 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA upstream 952139 29563196 ~ 29588122 (+) False LOC103025432
XM_022674976.1 mRNA downstream 114638 30661999 ~ 30668744 (+) True LOC111193577
XM_022674977.1 mRNA downstream 124791 30672152 ~ 30711252 (+) True gart
XM_007237759.3 mRNA downstream 713919 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 765379 31312740 ~ 31319149 (+) True adamts1
XM_007237757.3 mRNA downstream 778333 31325694 ~ 31341351 (+) True cyyr1
TU144751 other upstream 759334 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 1819981 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 2473278 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2518214 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5170822 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile