RNA id: XM_022674389.1


Basic Information

Item Value
RNA id XM_022674389.1
length 1907
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC103035666
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19409307 ~ 19411213 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATATGTCTTTTGTTTCTTCCCAGAAGGTCTAATCCAGCAGAAGCACCAGAATGAGCTGGGGTACACTGTACACCCAGTTGGTTGGAGTTAATCGCCACTCCACCAGCCTTGGCAAGATCTGGCTGTCCGTCCTCTTCATCTTCCGGGTCACCATCCTGGTAGTGGCTGCCGAAACTGTCTGGGGTGACGAGCAGTCCGACTTTGTGTGCAACACCTTGCAGCCTGGCTGCGAGAACGTCTGCTATGACCACTTCTTCCCTATCTCACACGTACGCCTCTGGTGCCTGCAGCTGATATTTGCCTCAACTCCAGCGCTACTGGTGGCCATGTACGTCGCCTACCGTAACCATGAAGACAAGCGAGGAATCCTGCAGGGTGAGAAAAGGTCAAAGGCCAAGCAGGAAGAAGACCTGGAGAgtctgaaaaagagaagacTGCCCATTGCCGGCCCACTGTGGTGGATCTACGCCATAAGCCTGGTCTTCCGCTTACTGTTTGAGGTGGTGTTCGTTTATGCCATGTACGCCATTTACGACGGTTTCTGGCTTCCCAGGTTGGTTCGCTGTGAGGTGTCGCCATGTCCCAACGAGGTGGACTGCTTCGTGTCAAGACCCACCGAGAAAACCGTCTTCACTGTCTTCATGGCAGCATCTTCTGGAGCATGCATGGTGCTGAATGTGGCGGAGCTGGCCTACCTTGTAGCTAAAGGTGCAACACAGTGCATGAGGATGAATGCTGGGAAGGGCCGTGCAAATCTCACAGGTAAAGACAAAGGCCTGCTGCAGAACAAGAAGAATGAAATACTGCTGTCTTCATCATCTTCAGTGTCATCCACTTGCAAAGCAGTGTAGGAGCAGTGTCCTGTGTATTGACTTCCGTTTCCgttcttttgtcttttgttttgcttttttttttttgctttttcaaaTTTTATGGCACCAAACACCACTAAACAAGCCTTTGCTCAGTATTCTGCAACTCATGCTAAATGTTACTCGTTCAAGAAGCTCTAGTGACATCTAGTGGCAAAGCCCACAGTTCCTGCCTGAGATGCTTAGAATCTGGGTTAGAACAATCTACAGTGTGTTAAAACATACTAAATACATCCAAAGCTAAGCATGCctatgtattattaaaatattactatgAAAGTAACTTGCTTTATGTGGTCAACAACTAACATTTAGAATACAATACTGAATGTGAATCCTGTAAAACCAACAGTATCTGCTAATGCTTGGGATTAGGAGGGTGGTGgtacactgttaaaagtatAAGTTCCTTAAGGAACCTTTAGGTGTTCTTCAATCTGAAGTTTCTCAAAGAACATATACTTTTAACAGTCACTGTCATGAGTACTATACACAAGTACTATATTATCACTGAATCCAactgtgaaaaagaaaaaaattatatattacaggCTTTCACTGTATTTACCTTGCTTCACAGAATACATACAATGTTATTACAACGTATGTAATAGTCTATAAACTGCTAAATATATAGTGCCTTAAAATGAGCCATTAAGATTTATAAGTATATTTTGTAAGTGACTGGATTGTAACCCTTAACCAGTGTTTAATTCACCATGCCTTAATGCCTTAGTGCCTTAATCCTTCTTTTAGGGCCCTATGATTTCCGTGATGCAGAGAACCCTGAAATAAAAACGCCTGTCAGATATGAAGACAAAAATGtgacaacaaagaaaaaaaaagtagggaTTTCATGGGgcccttttattttttagtaatccattttgtttttgctttttgtgtttACAATATTAGGTATTTAATGCCTAAATCATTTGTTAATAGGCGGTTAAAATGTGGTCAATCTGCATATACTAATTCAGTTGGATAAagcatagtgtgtgtgtgcttttgtaaTTTGTAGATGTTTAT

Function

GO:

id name namespace
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component

KEGG:

id description
K07621 GJB2, CX26; gap junction beta-2 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141465 lncRNA upstream 86077 19323008 ~ 19323230 (+) True G104729
TU141444 lncRNA upstream 203593 19205426 ~ 19205714 (+) True G104712
TU141436 lncRNA upstream 258345 19147704 ~ 19150962 (+) True G104706
TU141432 lncRNA upstream 289041 19118654 ~ 19120266 (+) True G104702
TU141400 lncRNA upstream 377996 19031017 ~ 19031311 (+) True G104680
TU141550 lncRNA downstream 122821 19534034 ~ 19534314 (+) True G104798
TU141551 lncRNA downstream 123243 19534456 ~ 19536048 (+) True G104799
TU141564 lncRNA downstream 132490 19543703 ~ 19558989 (+) True G104809
TU141571 lncRNA downstream 148820 19560033 ~ 19560591 (+) True G104811
TU141629 lncRNA downstream 278887 19690100 ~ 19690589 (+) True G104841
XM_022674833.1 mRNA upstream 100071 19168883 ~ 19309236 (+) False LOC103025512
XM_022674832.1 mRNA upstream 100071 19246922 ~ 19309236 (+) True LOC103025512
XM_022674829.1 mRNA upstream 341820 19057398 ~ 19067487 (+) True LOC111193549
XM_022674828.1 mRNA upstream 358391 19033405 ~ 19050916 (+) True LOC103024880
XM_022674826.1 mRNA upstream 358391 19033423 ~ 19050916 (+) False LOC103024880
XM_022674834.1 mRNA downstream 1807 19413020 ~ 19419379 (+) True LOC103025817
XM_007254820.3 mRNA downstream 14170 19425383 ~ 19457166 (+) False LOC103036301
XM_022674835.1 mRNA downstream 14170 19425383 ~ 19447033 (+) True LOC103036301
XM_007254821.3 mRNA downstream 71413 19482626 ~ 19532872 (+) True LOC103036999
XM_007254874.2 mRNA downstream 151466 19562679 ~ 19576104 (+) True LOC103026133
TU141369 other upstream 486104 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 2281997 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2515584 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2901530 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2951098 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1578060 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1607825 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 1915979 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3398866 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4504422 23915635 ~ 23923771 (+) True G106017

Expression Profile