RNA id: XM_022674649.1


Basic Information

Item Value
RNA id XM_022674649.1
length 2697
RNA type mRNA
GC content 0.52
exon number 18
gene id pibf1
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7469343 ~ 7538634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGTCCTTTTGTTTAACAGCTATCAAAGCAAAGCAGCTCACAGGGTTTGTGCACAATATGACTGGCCACGATTTCGTTCCCACgtcttaataagtcgtggctcCTGTGTTTAGTTTAGGGGTCGGTAGTGAAGTGGGCAGTCTCGCTGATAAAGGCTCTGTGGCAGACAGGCTCCTGTGTTTAGTTTAGGGGTCTGTTGTCTCCAGGAGCGGCGGGACGGTTAAACGGAGGAGTTGAATCCGCTTCTGGAGAGGatcCACTGACATGCCACCCAAAAAGCACAGGGATGGCACTCCCAACATCTCCAGCTCTCTGGAATCTGAAGATATCAGTCTGGAGACCACAGCACCTACTGACGACATCTCATCTTCAGACGAGAAGGATGGGACTCGGAAAGTCACCAAACAGCTGCTGGAGAGAAAAGAGCTGCTTCATAATCTTCAGCTTCTGAAAATCGAGCTCTCGCAGAAGAACCTTATTATTGACAATCTGAAAGTGGAACACCTTACCAAGATTGAGGAGCTGGAGGAGCGGCTGAATGATGCTCTACATCAGAAACAGGTCCTGGCGCTTCGACTGGACAGCCAGCTCAAACTCCAGCAGGATGAGAACAGAAAGCATCAGGCTCTGAGGAAGCAGGAGATGGACACCATCCTGCTGCGTCAGAAACAGCTGGAGGAGACCAACAGGCAGCTGTGTGATCGAGCCGGAGACATCCGCCGCAGCCTGAGGGATATGGAGCTGAGTGAGGAGAGATACACGGAGCTGAGAGAACTTCCAGAGGACAAACTCTCCATCTCTGAGTATGTAGCGGTGCGCTTCTACGAGGTGGTGACCCCCCTGAGGAATCAGGTGACTGAGCTGCAGATAAAGAGGAACAGCCTGGGTGATGACCTGGACAGCCATCGCAGCCAGATCAAATCCCTCATGGAGAGCTATGAGGATGAGAGAAGAGCTCGCTCAGAGCTGGAAATCCGCTGCCAGAGAGTGACTCTGGAATTGGCCGACACCAAGCAGCTCATACAGGAGGGCGACTACAAGCGGCAGAACTATGATAAAATCAAACGagagagagatggctaTGAGACGGAGGTGAGAGAGCTGAGGAAGAAGGTGGAGATGATGGACCTGACGCAGACAGCCCTGACCAAAGAGAGGAATGAACTCAGTAAAGAGGTGGCCACTCTGCAGCAGTCGGTTACTCTCCTGCAGAAAGATAAGGACTATCTGCACAGGCAGAACATGGAGCTGAACGTGCGCTGTGCTCACGAGGAGGATCGCCTGGAGAGACTGCAGGTCCAGCTGGAGGACACCAAGAAGGCCAGAGAGGAGGCCTACGATAAATACGTAGCTTCCAGGGATCACTATAAGACAGAGTATGAGAACAAGCTGAGGGACGAGCTGGAGCACATTCGCCTGAAGACCAGCCACGAGATCGAGAGCCTGCAGCGCGCCTCCAGGGAGATGTacgagagagagaacagAAGCCTTCGTGAAGCACGAGACAACGCAGCGCTGGAGAAAGAGCGAGCTGTGAGTGCAGAGAGGGAGATACAGGCCAAATACGACCAGCTCCTGGAACAGTTGAGGCAGCTGCAGCTAAACTCTGACAGTAAGGCGTCTGAGCTGCAGAACCAGATGAAGCTGAAGGCTTTCGAAGTGGAGCGTGCTCAGATGGTCCAAGAGGAAACGGCCAAGAACCTCAGCCTCTGCCAGATAGAATGTGAAAAGCATCAGAAGAAACTGGAGATTTTGACAAaagagttttacacactgcagtCGTCCTCAGAGAAACGTGTTGCAGAGCTGCAGTCCCAGAGCGTCGAACAGGAGAAGAGGCTGGAGATCTATGAGAAGCTGGAGAAGGAGTTGGATGACGTCACCATGCAGGCAGCAGAGAtggaaAACGAGGATGAGGCCGAGAGGGTGTTGTTTTCATACGGTTACGGGGCAAACGTGCCGACAACGGCCAAGAGGAGGCTAAAGCAGAGTGTTCATCTGGCGCGCAGAGTTCTGCAGTTAGAGAAGCAGAACACCATGCTGAGGAGAGACCTGGAGAGACGCTCTGCACATGTAGATCAAGTCACTGAAGAGCTGCAGACAACCAATCAGCTTCTTCAGCAGTCCCAACAGCCGTACAGCTACCTAATAGAAACAGTTCGCCAACGGGACACACGGATCCAGTCTCTAAAAGAGCGCCTCTcgcagctggaggaggaagtgAGTGCGCTGAAGAAAGAGAAAACCACACTGCTTCAGGTGAAAAACAACATGGCTGCTGATCTGGAGAGGTTGCTGAGCCACTGGGAGGAGCTGTCCGTCATGAAGCAGGTGCTGGTCAGCATGCGTTCACGGCAGCATGGGGAACCTTTATCCATATCGGAACCTGATATTGTGCATACTGGGACGGCTGTACACCTGCCCAGAAAGACCAGCAGAGCCACGGAGGAGGAGCAGTACCCTCCCAGACCTAAACCCACAGTCTTCACCAATAAAGAAGTCCCTGAATGGTACCGAAAGCTGAAGGTGAAGCCCAAATGACTAACCACACATGAATTTGAGAAAGCCAGCACGTACGCGAGCGAACGCAGGACTCATTCATGAAGGCATGCACTGGCTTTTTGACTGGACAGTGCATTTGTGTCAagattgtgtatatatttttggtgtatattaaaaaaagaaaacatttttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137394 lncRNA upstream 16980 7449913 ~ 7452365 (+) True G101767
TU137276 lncRNA upstream 79586 7384851 ~ 7389759 (+) False LOC103042156
TU137272 lncRNA upstream 86870 7378262 ~ 7382475 (+) True G101679
TU137269 lncRNA upstream 97948 7371071 ~ 7371397 (+) True G101676
TU137267 lncRNA upstream 99763 7369275 ~ 7369582 (+) True G101674
TU137419 lncRNA downstream 22816 7561450 ~ 7600202 (+) False G101778
TU137416 lncRNA downstream 23090 7561724 ~ 7610906 (+) True G101778
TU137418 lncRNA downstream 23090 7561724 ~ 7628715 (+) False G101778
TU137420 lncRNA downstream 23090 7561724 ~ 7600202 (+) False G101778
TU137497 lncRNA downstream 188523 7727157 ~ 7727563 (+) True G101832
XM_007246674.3 mRNA upstream 25850 7435630 ~ 7443495 (+) True tpt1
XM_007246670.3 mRNA upstream 76120 7384757 ~ 7393225 (+) False LOC103042156
XM_007246669.3 mRNA upstream 76120 7384758 ~ 7393225 (+) True LOC103042156
XM_022674644.1 mRNA upstream 124281 7338167 ~ 7345064 (+) True LOC103041253
XM_007246665.3 mRNA upstream 150426 7294285 ~ 7318919 (+) True LOC103040938
XM_007246677.3 mRNA downstream 3706 7542340 ~ 7560927 (+) True LOC103044305
XM_022674651.1 mRNA downstream 170665 7709299 ~ 7770528 (+) True LOC103034778
XM_022674652.1 mRNA downstream 170665 7709299 ~ 7770528 (+) False LOC103034778
XM_015605166.2 mRNA downstream 170665 7709299 ~ 7770528 (+) False LOC103034778
XM_007246696.3 mRNA downstream 1002360 8540994 ~ 8543564 (+) False LOC103023156
TU137208 other upstream 323005 7144802 ~ 7146340 (+) True G101622
XR_002650572.1 other upstream 471899 6955319 ~ 6997446 (+) False LOC103032856
TU136980 other upstream 1182611 6282025 ~ 6286734 (+) True G101452
TU136387 other upstream 2377597 5086760 ~ 5091748 (+) True G100975
XR_002650569.1 other upstream 2823989 4629124 ~ 4645356 (+) True atg4d
TU137786 other downstream 1176205 8714839 ~ 8719235 (+) True G102015
trnar-ucu_1 other downstream 1295206 8833840 ~ 8833931 (+) True trnar-ucu_1
TU138311 other downstream 2987043 10525677 ~ 10526160 (+) True G102411
TU138581 other downstream 3749235 11287869 ~ 11294815 (+) False map2k7
TU139745 other downstream 6390431 13929065 ~ 13935667 (+) True G103376

Expression Profile