RNA id: XM_022674728.1


Basic Information

Item Value
RNA id XM_022674728.1
length 4905
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC103027506
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12762266 ~ 12767170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGTCACATACATTCCCATTTGTGTTTGTGGATCCTATTGTCCTATGCGTCACCATTCGTCGCCCTCTGAATAAAGGCTGTCTGGCTCCCAGCTTAAATATTGCAGCAAACTAAAAACCAACCATCAGACCGGATTCATTCACTTCTGCTCAGTGGTGCGACAAGTAGTGGGGGCCTTAGGTGGGAACCAGAGAGCAAAAAAGTTCACTTCATACCGCAGGGTGCCAAGAGAAGGGGGAACACGACTACTCTGGAGCTCTAACTGTGGCAAGTTGCCCATTTGATACCATTAACCTATTGCTGCTTGTTCCAGAAGGATCGTTTTTGACCTGGTGCTGTCAGGTTGTTGCAACTgtggggtatttttttttttctttttgctttttatctttttgcaacttttttgagttttaaatttagatttttttagggTTAAGTGATAAAGTTTGTGACTTTGGACTTGTTGATTTTGCAAGCGAGCGACTCTACATGCCTCGGCTTGTTCATGATGGCTTTTTTGCGGCTACATTTAACTATGGAGAACATAAACCCATGTTGCAAGTTTAAAATCgatttttttaacagattttgagattttttaacAGGTTGCTCTGACTTCAATTAAATTgaacatgttttaatttaaatttaaaagctcTTTAGTGTATACAAAGACCAAAGCGGAGTCTGTCACCTGCTTTAAACAAATTCTTGCACGTTTTGGCTGGTGTAGTTAATCGTTTTATGTCGTTTACGTTTGTCAGTTTGCAGAGTTCCCTTTATTCTTTGTAATTTTGGCATTAAACAGGCctaattttttacattcttcTTTCCATCCTATCCCATCCCACCCCCTATTTACAGTGTTGATCGTCGACCATGGGTGACTGGAGTTTCTTGGGAAACATCCTTGAGGAAGTCAACGAGCACTCGACGGTGATCGGCAGGGTGTGGCTAACTGTCCTCTTCATCTTCCGCATCCTCATCTTGGGCACGGCGGCCGAGTTTGTCTGGGGCGACGAGCAGTCGGACTATGTGTGCAACACGCAGCAGCCGGGTTGCGAGAACGTCTGCTATGACGAGGCCTTCCCCATCTCTCACATTCGCCTTTGGGTTCTCCAGATCATCTTCGTCTCCACACCCTCACTGGTGTACGTGGGTCACGCTGTGCACCATGTGCACATGGAGGAAAAACGCAAAGAGCGCGAGGAGGCCGAGCTGAGCCGGCAGCAAGAGGCCGGAGAGGAGCGCCCGCCGCTCGCCCCCGACCAGGGCAGCGTCCGTACAGCCAAGGAGACCAGCACCAAGGGAAGCAAGAAGTTCCGTCTGGAGGGGACGCTCCTCCGAACCTACATTTGCCACATCATCTTCAAGACACTCTTCGAGGTGGGGTTTGTGGTAGGTCAATACTTCCTCTATGGCTTCCGCATCCTACCGCTCTACAAGTGCAGCCGCTGGCCGTGTCCCAACACAGTCGACTGCTTTGTTTCCAGGCCCACAGAGAAGACAGTATTTATCATCTTCATGCTCGCTGTGGCCTGCGTCTCGCTCTTCCTTAACTTTGTGGAGATCAGTCACTTGGGCCTCAAAAAGATCCACTTTGTCTTCCGCAAGCCAGCCAGGCCGCAGATCGAGGGGTCCGGGTCGTCTGAAAAGCCTTCCATGGCCGTTTCCTCCATCCAGAAAGCCAAGGGCTACAAGCTACTGGAGGAGGACAAAACCCCCTCGCACTTCTTCCCAATGACAGAGGTGGTGGGCATGGAGGCAGGGCGGCTGCCGGCGCCATACGAGCCATTTGTGGAAAAGACAAATGGGAGGGATTCAAGACCGCAGGAAGACATGTCGAAGGTGTACGACGAGACTTTGCCCTCCTACGTCCAGACGACCATGGTGGGGCCGAGCGGGGCTTGCGGGGTTATCCGGCTAGATGACGACGAGATGCCTGTGGAAGCGGACGTGGACGCCAGCGAGACGATAGAAGACACAAGACCGCTCAGCAGCCTGAGCAAGGCCAGCAGCCGAGCGAGGTCAGACGACTTGACAGTATAAACATATAGAACTGGATTAGAAATGCAGCAATATAAAAGTGTAGTCCTACTGACGAGaaggtgagagaaaaagagagagagggcttGCTTTAAGGCAACTGTGATGACACTTCTAATACCAGcttgttattttaaaagtgtttaagagaaaaaaaggataaaaaaattcatgctgtgcaattttttttgcgagaaaaacttgagttaaaatcttttttatacagcagtattttttgtactgtttttatcaagCGAATTGAAAAAGTGAACAAACCAAAAGTTAAGAGATGCTCTCATCAGTAGGATCCATATGGTGAGGAGAGAATAAGATCTGTTATATAATATCAAAAGGAgaaatgtgctgttttttttaaatcacattttctaTCCAGAATTTTAACTATCTAAGAAGTCAACTtcaaaatgtttacattttttggatTAGCCATTTAGCTAAATGTTGTATGTGTCGTTTTATTACGATTATTATTTTGATAAGCAGATGATTTCTGCAATGCTGTCAGGGTAACATCATTTTCACCTCAATAACTCATCCAAATACAACAATGGATCAGTTAATCTTTTTGGTTTTGTGCGTGTCCTGTGCATTCCTGTTATGTCCAGCTTGGCCTACATGTATGTGAGAGGTGAAACAAATGTTAATTGATTCATTGCACAGTTGCATATGGTATGGTATGCTctactatatacatatatacatatatatatctatataaaagGAATGACCACTGGCTTATTACGTTAAATGTGTAGCATAATTCTGTACTCTCATGAGATGCTCTTCATTTGAACACGCTCTAGATAAGTGTATATTTGGTGGAAACTGCGTTCGCCATGGGAACGAACATGGGCCAGATTCTTTCTAGCCACTCTGTGCATGCAGCCACGATGCTGATAAAGATCACGCCAAATCAGCACAACGTATTGTTTAACtagagacaataaaaaaaacaggcattaCAGACAACTGGGCATCCTTGACATTGTTCTAaagaaaacaactttttttaacCTCGGTTGatctgtgatttttatttatcctGCTTTATATCTAAGTTATAACAATTGTACCAAAGTTTGTACACGCTTATGCTGCATAGCATTTACCTCATCAGATGTCAGAGCTGGGAATGATCTCACGCCTGAGTTGACTGTGTtccattttaaacagttttacactatttcaaaacttaaaaaaaaaaaaaaaaactggttagCCAAAGACTTTGGAGTTTACTGAACTACAAAACTAGTTTTCCAATCATTTCCAAGTGTTTTAATGCAAATACCAAactatatttcaaaatattgttagcattgttagcattattagcattattattatacaagtTGATAAACTTGATGATACATTATCCAGTTTTGTGCACATCCAAACACAAAGGAAACTTTTACACAGAGACACAAATAAATAGAAGTTCTGTATAAGTTAACTGTATACGACTGCTACTTCTACTACCATTGATGTGCAGAGCCGCCATCTTGAATTTGGAACTCTAACTAGCGTGGCGAGGTTTTCCCAACTCTGAGTGGAAAATCCTACTCATTTTTGGGATGTTACAGCTGAAATTTTCTACTTTAAACTCGGAAAATCTGACATCCGAGTTTGAAATTAAATGCAGCATGTGTGTTTAAacttggtgtgttttggatgaaGAATAGGAGGAGTAGTTTTTACGTCTTAGTCCACTGACTGGAAAAACTTAATTATGCTTAATTCAAAGTAAGTCTTAATCTCCTTAATTTATCTGGTGGTGTTGTGTTGCTGCTTAACTTTGGCACAGATTGTTCAAAAATGGAAACTTTAAACTTCCTTCTCAAGCTGAAATTTAGCTTAAGATAGAAACCCAAAATGATTTTCTTAGAAAGGGGTTCCTTTCTAAGTTTACAATGTCTCTAAGTCGGAACTGTCTTTCCCAGAAGCTGAATAAACCTAAGTAAAGCCTGAAAATACAACTGAATGATTGAGTACATCATTCAAACAAACTCCACTTAAAATGTAAATCCAAGGCCAATCCAAAAGGCTTgactagactttttttttacgtagCTGAATCATTTACCACTCTGCTGCCTCTACATGCCCAATTTCAAAGACAGAAGCTAAGATGTATGGTACACATGTTCACACATTTGCAGTTTCAGTTTTACACAGCGTCCCACGCAGTGCCTGTAGATCAGAGTAGAGGTTAACCTGACCACAATGAACACGACTCAAAATAACAGCAGATATCaaactattataattataattggcGCTGCTAATCTGCAGAGAACTGCACTGAGACGTGGAAGTTTATTTATGTACTGAAATATTCTTCTGTAGATATCATGTTCAGCAGACATCGTCAGAGCCGCATGCGCTCATTACGATGTAATGATTTCTACACTAGCCACCTGAAAATGGGTTTATACAAATGCTCTCGAGTCTTTTCTCGAGGATGGAGGATTGTGGGGTGGTATGTGATGTACTGCTGTCGAGACTAGTATTGATAAAGCAAGACTGTAGAAAAAGATCTGTTTGGTGTTTTTgcttaaaagaaagaaagaaagaaaaatagaactACTATAGAAACACTACTGAGGCAGTTGAAATTTCTTGTCACAAAATATAATATCCAGAAAGCTCTTTTTGGGGgttctgtgtgtttgttatttaGTTCTCCTTTTTTAAAGTGCCAAGCCTTCTTTTATTCCTTTTCTTAACTCAAAAAAAGAGACCTTTGACTAACTTGTAATACATTATTGCTCATATAACTGCATGCAAATGTGTCATCATTTGACATCCTGTGgacacaaacaataaaaaagtcatGT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0007154 cell communication biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005922 connexin complex cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG:

id description
K07617 GJA8, CX50; gap junction alpha-8 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139239 lncRNA upstream 22098 12626199 ~ 12740168 (+) True G103023
TU139242 lncRNA upstream 85748 12654601 ~ 12676518 (+) True G103025
TU139117 lncRNA upstream 239974 12483622 ~ 12522292 (+) False cryzl1
TU139094 lncRNA upstream 339449 12416419 ~ 12422817 (+) True G102917
TU139092 lncRNA upstream 347293 12414166 ~ 12414973 (+) True G102916
TU139295 lncRNA downstream 46 12767216 ~ 12783303 (+) True G103067
TU139296 lncRNA downstream 8084 12775254 ~ 12782304 (+) True G103068
TU139294 lncRNA downstream 8907 12776077 ~ 12783303 (+) False G103067
XR_002650548.1 lncRNA downstream 14429 12781599 ~ 12783058 (+) True LOC111193478
TU139318 lncRNA downstream 50088 12817258 ~ 12817489 (+) True G103086
XM_007251350.3 mRNA upstream 29069 12568579 ~ 12733197 (+) False bcl9
XM_007251349.3 mRNA upstream 29069 12660253 ~ 12733197 (+) True bcl9
XM_007251353.3 mRNA upstream 29069 12660253 ~ 12733197 (+) False bcl9
XM_022674727.1 mRNA upstream 29069 12662101 ~ 12733197 (+) False bcl9
XM_007251348.3 mRNA upstream 201155 12546336 ~ 12561111 (+) True LOC103025394
XM_007251357.3 mRNA downstream 18588 12785758 ~ 12815661 (+) True LOC103028151
XM_007251358.3 mRNA downstream 51016 12818186 ~ 12833144 (+) True LOC103028459
XM_007251363.3 mRNA downstream 69989 12837159 ~ 12846645 (+) True stn1
XM_022674730.1 mRNA downstream 83831 12851001 ~ 13032506 (+) True sh3pxd2a
XM_007251359.3 mRNA downstream 83831 12851001 ~ 13032506 (+) False sh3pxd2a
TU138581 other upstream 1467451 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 2236106 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3928335 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 4043031 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 5615926 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1161895 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 1493455 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 1851465 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 1923873 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 3684005 16451175 ~ 16458209 (+) True G104000

Expression Profile