RNA id: XM_022674753.1


Basic Information

Item Value
RNA id XM_022674753.1
length 6642
RNA type mRNA
GC content 0.42
exon number 23
gene id knl1
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14388458 ~ 14409396 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACTTAAAAAACTGTTCAAACGTTAACCGGCGCTGCGCGAGCGGAGTTGATGCACCCAGAGCGAACAGAGCAGAACCGCGAGTTATAATCACAGGGATTTACACACAGAGCAGCTAAACCAGCGCCTGTCACTCTAACGCTGCGGGTTTATTAGCTCATATCAGTATTCGGGAGAAAATCCGCCGTTTTAATGTTTCTACTGAGTTACTAGCTtcagctaacaggctaactagCGCAGCGCTGTGTTGTAGTTATCTGGTCTGAAGCTCTCTGATGGAGAACACGGAGCCGGTCAGATTCGGGCATGAACCGGAGGGAATGTCCAAACGGAGAATTTCATCGattttaaaagcTCCTCGGACATCCATGAAAGTGTGTGGAGCTGATCAGGATGAACCgGCCCAGGAGGAAACCAGACCAATTGAAAAGCGTCGAAACTCAAGAAGAGTCAGTTTTGCcacaaaaaacaatgttcatgtcTTCTCAAAAGACATCAAGGTGGATTCCCCAGTACTGGATCCTATTCAGAATTTGCATTTTGTTGGGTTGGACACCATGGTAAACATCCCCTTACATATCTCACGACTAAGTAAGGAGAATTTTTTCCCAGATCCGGTTTTACCAGATGAACCTGTGGACAGAACTATACTTCTTGGAGAGGATACTGGATACATGGATATGACTCAAAGTCACACAATTACAATTGACAATGAAGTTGGAATGAACCCAGAATTCAGCTTCAATATTGTGGAAAATGTCACTGGATTACAGAAGGTGAAGAGTCAGGATGATATAACTTCCAAAACTATTGCCCAAAAGGAAGGCGCTAATGTGCAGTCAGATTTCAGTGATTTCCTCGCTAGTATATCCAATCCAGCTTCACAGAATGCACAAAATATTGTGACTTCATCttccaaaaaaaacagtaataatctCTGTTTAGAAGATGCAACCAGTATATCCATGGACAAGGAAAATCTCCTGCCATCTCGGTTAACCAAGAATGTGCATTGTACCATTTCTGCACCCAATTCTCAGCCAATAGGGCTTCAGCCAAGAAGTTATACAGCTTCATTTCTGGAGCAGGAGAACATGGACCTGACCAAGAGTCATACCGTTGTCATTGGTGGGAGAGGGCCTGCTCACCATGATGCATATCCAGTGTGTATGAATCCTAAAAGTGCAGCTTTGATGGCACAGTCCTTCTCAAAGGATTCAGATGACATGGAGATCACTCATGTTCACACTACTACAATCAACTTCAAAGATGTTCGCAGCAAGCAACTGGTTGTGGATGATAACACATCACATTTTGCCGGTGATACTAGTAGTAGGATGATCATGACCCAGGTTCTTGATGGATGTCTACAAGAACAAGAACGAAAAGTAACTACAGTTGATGAGCCAGTTTTCTCCCAAGCACATATGTCCTCTTTTAATCGCTCTCAAAACAGGAATGTATCTGATCGAAGCAAAATTGACCAATTTCAGAGTAATATTTCAAATGCCACCATGGCTTTTTCTGATGACATGGAAATAACACAAGCCAACACTGTTTTTCTTGATCTCAAAGGTGAAGAATTGTTTTCAAAATCAAGGAAAGATTCATCTTTTGCAACATCATCATCTAGGACTAATGACAGTGGCAGAGCACTGATTGCTTCAGAACAGCAAAGTGTCCTTCTTTTAGAGAAAGAACACGGAAGCCAAAAACATGTGAGAACTACTGAAAATACCATAGTTTTCAATGATCAAAATGACTTAATGGAATTAACATGTCAAGCCAATTCCTCAGTCATGGTTATGTCTCCCAGTCCTGATGAAATGGATTTGACAGGATGCAACATTGCGACCATAGATGCAGAAAATATATTGCCAACAACTGGAGTAAAGTCGACAAAACGGACATCCTTTATGTCAGTACCGACTGTCTCTGTGGAAGCCAAAAAGGTTGACTTTGCTCGGAGTGACTCTACTGTTCCTCacatggatgatgatgatgaaatggAAATGACACAATGTCAGACTGTTGTGCTTGAATCCAAACACTGCATGCAACAGACGTCCTTCAGCAACTCAAGAAAATCCTTCTCCGTCAGGTCAGGATCCTGCAGAAGTGATGTTGGCAGCAGTGATTGTGAGGAGATGGCTCATAAACTCTCTGTTTTTACTGAACAGAACAGGTCTTCAGATTTTGAGGGGAAGACTGATTACATGGACATGGATTTGACTGGATGCAATAATGTGACCATAAACCCAAAACATATTTTGACAACAAGTGGGGTAAAGTCAAGAAAACAGACATCCTTCATGTCAGCACCAGCTGTCTCTGTGGAAGCCAAGAAAGTTAATTGTGTTCAGGGGGACACTACCGTTACTCACATGGATGATGAAATGGAAATGACAAAATGTCAGACTGTTGTGCTGGAATCCAAAAACGGCATAAAACAGATACCCTTCAGCAGCTCAAAGAAAACATTATCTTTTTTCTCAGGGTCCAGCAGAAGTGATGTTGGCAGCAGAGATGGTGAAGAAATGGCTCATACACTATCTGTACATACAGAACACCACTGGTCCTCAGATTTTGAGAGGAAGACTGATTACATGGACATGGATTTGACAGAATGCAATAATGTGAACAGAAACCCAGAAAATATTTTGCCAACAAGTGGGGTAAAGTCGAGAAAACGGACATCCTTCATGTCAGTACCAGCTGTCTCTGTGGAAGCCAAGAAAGTTAGCTGTGTTCAGAGTGACTCCACAGTTACTCGCATGGAGGATGAAATGGAAATGACAAAATGTCAGACTGTTGTGCTCAAATCCAAAAACTGCGTAAAACAGATACCCTTCAGCAGCTCATGCAATACGTTATCTTTTATCCCAGGGTCCTGCAGAAGTGATGTTGGCAGCAAAGATTATAAGGAGATGGCTTTTAAACTTGCTGTACAAAGTGAACAGCACAGGTCTTCAGATTTTGAGAGGAAGTCTGCAACCTGTATTGTACCTTCAGCAAACACATTTCACCAGGATCTGCCTGACGGCATGGTGTCTGCAGTACAAGTTGATATGGATCTGACGGGATGCAACACAATCTCTATTGACACAAAAAGTCCCACCGTTGCAGGCGCTTCACATAGTTTGACCCAAGACCCACTTGAGGTATTGTCTTTCAGGCCAGTTGCGTTGGCTAAGGATCAAATGGAAATGTCTGAGGTTggtgaaaagacagaaaaagtaGATGTGGACACTAGAACTCCTGTAGTCAGTCAGAAAGAGGTAAGCCTGGCTGACTTGGGCGTGGACAAAGACCAAGCAGTTGTAACTAATTTCAATCACTTCGAAGCCTCATGTGTCAATAATGTAAAGGAGGGGTCATCACTTGCTACAAACATAGAGCCGTCTGAAGAAGACTGTGATATGGAAATGACTAAAGCCATGACTGTGCCTTTAAAATTGGGAGAAATTGTGAAAGAAAAGGATCTGTCTGCCACCACTGCCCAAAGGACAGACCATGCTCTGCCAGAAAACCAAAATACAAAATTGACACCTATCATAACAGAAGGTTTTGCAGCCGAGTCTGAGCTTTGTGTCAAGAATGACAAACCAAACTCTGCTAAGTCCAGACGTAGGAGTCTAGCTGATCTACAAGTAAAACTTCAGAACATTGCACAATGCATCAACGAACCCGCCGAAATTCAGACGAGAAGTTATACAGCACCTTTATCTCACCTCACCGATTTTGAGGCATGTCCAGGTGAACTTTCTGAGAGAGACCCATCAACAGAAATTCAGGAAACTCCTACACTGATAAATACTGCCAGCTCTGCTAATATTGAGAGCACCGCGCCATTTAATCTCAAGAGCTTTCTTACAGCAAGACTGTCACTCGGTGGCATCACACCGAAACTTCCTTCACGATCCAAATCTGCAAGCCCGAATCAAACAGAACCTATTTGCACCAATAGATTTCAAAGTCTGCAGTTGGAGGCACATATGGATGGCGATATACAGAATAGCTATGATGTAATGAACATGATTGAAGACGAGGTGCTTCCTGAAGAAGATTTTTCTGATACTGTGATGAGCTATCTCAGCAGTAAGAAGGATGAACAAGATGTTGCTGCAGTGGCACCCTCGGGTGAGGTTGCTGTTCAGGCAAATGAGTTTGAAAGCTTGCCTGAAAAAAGTTTATGTGAAGTAGAAGATTCTGCGGCTGAGGGAGAACTAAAAGAAACCAATGACATTGTGTGGTGTAGTAATTCCACAGCAGCTGGTTTTCCAAGTGCTTCAAGCCACATAACCAAAACAATCGATGAAACAAGCTCTAGTGGCAGTTCAACCCATATAAAATGTGACATCATCTCAGAATCAActctGAAGAACTCCCAGTTTGATTcacagatggatgggacatttgaACAAGAATTTGATTTCACCAAGACACTTGCAGATGGAAGCATCACAGTGAATGAGTTCTTAAGCCACTTTGGTGCAAACTCTGTAATTCACAAATCACGACCCAGTGCTCTTCCTGAAAATTTTAGAATCACCCAAACCAACACACTGATGGACCTGCTCagggaaaaatacattttccgtCCAAAGCAGAGAGTATATGAAGCAGATTGCCAGAAACTGGCAGAACTTGCAGAGGgGTTTAAAATGCAGATGACAGAACAAGATAAAGCACTAAAAGATGTCAATGCAGCAGTTCTACAAGATGTGTGCGCCTTCTCAGGTGTCCAGCTACAGAAATTTGGTGGAAAGCTGAAAGAGCGAAGGGGAAACTTCAGAAAGAGAAGCAAGGCACTTTCTCATGAGATAAAGGAAGCCTTGTACTCTGAACTCTGTAAAACGACACAGgaGTCAAAACAGAAGTTGGTGGATAAAATCTCAGAGACCAATGAAATGTTGAAAGACCTAGATGGATGCATTATTGACCTGGAATCTGAACTGGAATCAGTGAGCAGTATACTGACGGGCGATCAACATTCCCTAAGTGAAGATGAGTCGGCTTTAAAAGCAAAGAAACGGGAGCTTGATGTTCTTAATTCAGATGTTGTAGAGACAGAAAAACTAATTTGTGACCTAGAACGTCAGCGGGTTTCTTCTGAGAGCCTTTTGGGGAACCTGCAAGAAGTCGTCAAAGAATTTGAAAACCGTATCAGAACTCTGAACAGTTTGAATGAGTGGCAGTTTTGTGAGCGTGAGGAAAACACGGCTGTTTTCAGCTTTCTTCACAATACTGTTGAAATGGAAGTAAAATTGAAAAACCCTGGTGaaaggGGATGGATCTGTGATGTTGAACAGGATGTGGATCTATCATTCAGGTTTTTATTGAATGgTGACGCATCGCAGCCTCATGCCCGCATGGTTCATGTGTTGCTTGCAGAGCACATTAAAGCCCAACCTACGTGGACTCAGAAGTACCCAACCACACGACACATACCAGTGTTACTCCATAATGTCAGCTTGGTGGTGAGCAGACTTCGACTTCTAGGTGAAGAAATCCACCAGTTGAAGAAATGGGGAGGATTGAGATTTGACATCCTACACTTCAATTGTTCGGATACACTAGTTGAGATTGTTTTCTCCAGTATCAAGGCCTGTGCCAAATTTGAGCTAAGTCTGACTGTAACTCCAGACTATCCCTTGAATCCCCTTCAAATGCAGAAGTTTCAGAATCTCATTGGGAAAACAAGAGTTGACCAGATTGAAGATGTCTTGTGCTCTGTTACGCCGGCAAAGAATTATCTGACTAACCTCATAAAGAAGATTCATGCTGATCTTCTGTAAAAGGACTTGCTTGAACGAGTGTCCATCTGGCTCAAATACAGTACAGGCATAAGACTTGTGTGACCtgcaattttttgtttaatgagcaatgaaaagtgcaaaaaaaaacagatgaataaAAATTTTAACCAGCATTTTTTAACACTTGCGTGTGTAATTTAACTTCTTGTGAGCGCAAATGTGAAACTTGCAAGCAAAAAAAGTGAATTGTGTGCGCAGTGAATAAAATATTGCTCTCAAGCTTCATTTTTAATCCtctcaggtgttttttttttctctctctttcttcgtCTCGAAGTCACCGTTCTCCTGTGGCAGCAGTTTGTGAGCGAAGGGTTGTTTGGATGATAGCATAggcagctagctaactctcctgctgtccttctttctccaCCCTCCTCAGGCTCTGGGAGGTAGGCGGTCCTTCACAAACCCcaggagatatcagccaatagtgttcgctgagggaggtgatcctgactccgcccccaaactgtcaaaaccacccctttcaaaagtCAAGGGGTGAAAAAATCACCCGCGCACAAACTGCAGCCACAGGAGAACTGATTTCGAGATGAAAGAAAAACCctagaggagaaaaatgaagcttgagAGTGATATTCTGTTCAGCGTGAACACAATTCCTTTGCgcacgagtttcacatttgtgctcacaagAAAttcatttacacacgcaaatgttaaaacacgctggttatttttgacattgatgtgacttTCTTCCACTTCAGtcatatttacacacaacttGGTCATGTATATACTGTTCAATGATAGTTGCTGTATGTGGAAACTgtctaataaatgtatttttgctgtCA

Function

GO: NA

KEGG:

id description
K11542 CASC5, KNL1; protein CASC5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139925 lncRNA upstream 762 14377759 ~ 14387696 (+) True G103517
TU139922 lncRNA upstream 12926 14374087 ~ 14375532 (+) False LOC111193540
XR_002650592.1 lncRNA upstream 13171 14373654 ~ 14375287 (+) True LOC111193540
TU139912 lncRNA upstream 43990 14343670 ~ 14344468 (+) True G103505
TU139898 lncRNA upstream 87169 14300862 ~ 14301289 (+) True G103495
TU139940 lncRNA downstream 22516 14431912 ~ 14510140 (+) True G103524
TU139950 lncRNA downstream 65811 14475207 ~ 14475622 (+) True G103533
TU139962 lncRNA downstream 135108 14544504 ~ 14545395 (+) True G103544
TU139963 lncRNA downstream 135108 14544504 ~ 14545929 (+) False G103544
TU139979 lncRNA downstream 214246 14623642 ~ 14624134 (+) True G103553
XM_022674749.1 mRNA upstream 58043 14308926 ~ 14330415 (+) True LOC103031792
XM_022674748.1 mRNA upstream 58043 14318198 ~ 14330415 (+) False LOC103031792
XM_007241890.3 mRNA upstream 98299 14282927 ~ 14290159 (+) True LOC103031172
XM_022674747.1 mRNA upstream 144402 14223980 ~ 14244056 (+) True LOC103033906
XM_022675037.1 mRNA upstream 326915 14051804 ~ 14061543 (+) True LOC111193619
XM_022674755.1 mRNA downstream 1287 14410683 ~ 14664759 (+) True dmd
XM_022674756.1 mRNA downstream 1287 14410683 ~ 14664759 (+) False dmd
XM_022674757.1 mRNA downstream 1287 14410683 ~ 14664759 (+) False dmd
XM_022674758.1 mRNA downstream 1287 14410683 ~ 14561360 (+) False dmd
XM_022674762.1 mRNA downstream 1287 14410683 ~ 14551702 (+) False dmd
TU139893 other upstream 126919 14260625 ~ 14261539 (+) True G103490
TU139745 other upstream 452791 13929065 ~ 13935667 (+) True G103376
TU138581 other upstream 3093643 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 3862298 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 5554527 8833840 ~ 8833931 (+) True trnar-ucu_1
TU139970 other downstream 209239 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 281647 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 2041779 16451175 ~ 16458209 (+) True G104000
TU140514 other downstream 2092780 16502176 ~ 16507777 (+) False col17a1
TU140710 other downstream 2479000 16888396 ~ 16893723 (+) False LOC103035065

Expression Profile