RNA id: XM_022674762.1


Basic Information

Item Value
RNA id XM_022674762.1
length 9253
RNA type mRNA
GC content 0.47
exon number 66
gene id dmd
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14410683 ~ 14664759 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTCACTACCCTGCATCCAGCCCACACTTCACCTACTACATCTCTGTGGTATCAGGCACTGACTGTTTGATTTTGATACACATCACATTTTCTGCCATGGCTGAAGCCGGGTACTCGGAGGACCAGTGGGAAGTGGAGGCTTCTGAAGATGAATTTGGAGAAATCATAAAGAGTCGATCAGATGAAAGGGAGGACATACAAAAGAAAACTTTCACAAAATGGATAAACCTACAGTTTGCTAAGGCTGGGAGACCCCCTATTGATGACCTGTTCACAGACCTGTGTGATGGCCGTCGTCTTCTGGAGCTTTTAGAGAGTCTGGCTGGACATGAGCTGGTGAAAGAGCGTGGCTTCACCAGAGTGCACTCACTCAATAATGTCAACAAAGCACTGCAGGTCCTTCAGAAGAACAATgTTGAACTGGTGAATATTGGTGGAGCTGACATTGTTGATGGGAATCATAAATTGACTTTGGGACTCATCTGGAGCATTATTCTCCACTGGCAGGTGAAGGATGTGATGAAAGATGTGATGGCAGAcctaaaacaaaccaacagtGAAAAGATTCTGCTGAGCTGGGTTAGACAATCCACCAAGAATTACCCACAAGTCAATGTGGTTAACTTCTCCAGCAGCTGGGAGGATGGTTTAGCCTTCAATGCTCTCATCCACAGCCACAGGCCGGAGCTGTTTGACTGGGCTGTGGTGGATCAGATGGATAAGGCTATTGAAAGGTTGGATTATGCATTCAGTGTTGCTGAGAGGCATTTGGGCATTGAACGCCTGCTCGATCCTGAAGATGTGGCCACTGCTCATCCAGATAAGAAGTCTATAATTATGTACGTCACCTCCCTGTTTCAAGTCCTGCCTCATGGTGTGAGTATGGAAGCCATTCAGGAGGTTGAGACTCTTCCTCGAACTGTAGTAACGAAAGAGGAACGCTTCCACTTTCAAACACAGCAGCGCTATTCTcaacagatcacAGTCAGTGTCGCCCAGAGTCAGGTAAGAAGTCCATCTCCTTCAAGTAAGCCACACTACAAGAGTTATGCCTTCACTCAAGCTGCATATGTGAAGACCCCTGAACTGAAAAGAAAGACCCCTGTCACACAGTCACCGGAAAGACCGGAAGAAACGTGGCCCACCCTCAGTCCTCTCCCTCAGGGCTCAACCCAGCTGGAGAGTTACCAAAGTGCCCTAGAAGAGGTGCTGACATGGCTTCTGTCCGCTGAGGACGGCCTGCAGGCTCAGCCACCTATCTCCTCTTTTGTGGAAGAGGTGAAAGAGCAGTTTCACACTCATGAGgGCTACATGGTTGAGTTAACCTCTCATCAGAGCAGTGTGGGTAGAGTACTGAAGGCAGGGAGCATCCTGCTGGCCGAGGGTCAGCTGTCCGAGGAAGAGGAGAGTGAAATCCGGGAACAGATGAACCTTCTAAACTCTCGCTGGGAACATCTCCGTGTGGCCAGTATGGAGCGACAAAGCAGgcttcatgaagttttaatggACTTGCAGCACCAGCAGCTGAAGCAGCTTACGTCCTGGTTGGATGTAACTGAAGCTCGAATTAAACGTATGGGAGCGCAGCCGTTAGGTCCTGAAATAGAGGACGTGAAACACCAAATAGAAGAGCACAAATTGTTGCAAGAGGATCTGGAGATGGAGCAGGTACGAGTGAACTCTCTGACACACATGGTGGTAGTGGTGGATGAGAGCAGTGGAGATAGTGCCACTGCTGCACTGGAGGAGAAACTACagAACCTGGGAGAGCGATGGGCAGCAATCTGCAAGTGGACAGAGGAGCGCTGGCTTCTTCTTCAGAAGATTCTGCTGAGTTGGCAAAATTTTACTGAGGAGCAGaTTCTGTTTGATGCCTGGTTGACACAGAAGGAACAATTACTTATTTCCATCCAAAGCAGCACCGACTCCAGTGAAGTGGCCGCCAACCTCAGAAAGCTGGCTATTCTGAAAGCAGATCTGGAGCTGAAGAGGCAGACCATGGATAAGCTTTGCTCCCTTGTTCAAGATCTGTTAACCAACATCAAAAATAAAGAGGCAGCAGGAAAACTTGAAGCGAGATTGGAAAGGTTTGCTCAGCGGTGGGACAAACTGGTGCAGTCACTCAATCTCACCAGTACCAAGTTTTCAACCACTGTAACTACATCTCAATCTGAAGTTCTGCAGACAACTGTGGAAACTAGAGTCACCACTCAGCAGAAAAAGATACTGAAGCATGCTAAGGAGGGTCTGGCAACCCCTCCTCCACAGAAGAAGCGCCAGATTGTTGTTGACTCAGAGCTTCGCAAAAGgtttgatgtggactTCACTGAGATTCATAGTTTTATGACACGCTCGGAGGCCATCTTGCAGAATCCAGAATTCTCAATTTCACGCAAAGAGGGCAGCGTGGCAGACCTTTATGATAAAGTCTTGGCAATTGATAAAGAAAGACCAGAGAAATTCAGGAAGTTGCAAGAAGCGACGCGCTCGGCTCAGGCACTAGTAGATCAGCTCACAAGTGATGGGCAGCATTCGGATGACATTCAGCAAGCTGAACAGCAGTTGCGTGCCCGGTGGGTTGATTTCTGTGCTCTTCTGGCAGAGAGGCTGGCATGGCTGGCCTACCAGACCAAAGTACTGGCATTCTACAATCTCTTCCAGGAACTGGAGCAAGCTGTAGCCAATTCAGAAAACTGGCTGAAAGTGCAGCAGCCCCCGGCCTGCGAGCCAGAGCCACTGAGGATCCAACTTGAACGCTGCCGGGATGAGATAGCACGCATGTCTGCACTTCAGCCACAAGTGGGGAAGCTACATGAACAGCTTCAAGAGCtgcaagagaaagaggaaaCGCCAGTTCTCTTTGATGCTGATATAACTGCATTACAGGAGCACTACCACAAAGTTCTTGCAGACTTAAAAGCAAGAGAAAAACAGCTTGTATTAGTGCAGTCTAGTCTTCCACCTGCACGGTACAAAGATGTGATGGCAGCTCTTATGGCCTGGCTGCAGCAGTGTGAGGCCAAACTCGCTCTTCCCTCCACAGCAGTAACTGAGTACTCAGTCATGGAGCAGAGGCTCAAAGATATGATGGCAATACAGGCGTCCCAGCAAGAGCAGCAATGTAAAGTAGACGATCTAAACAAGATGGCTGAACAGGTCTTCCAGACGGCTCCACCTGATATGTGTCAAAAGTATCGTATTGAATTGGATAATGTAATGGCACGCTGGAGACGGATAAGTGAACAAGTGGAGGAAAATATACAGAAACTGCAGGAGCACATGGCCAAGTTGCAGCAGTTCCAGAACGACACAAAAACCCTGCAGAAGTGGATGGCTGATGTTGATGTTTTCCTGAATGAAGAGTGGCCAGCTTTAGGAGATTCTGAAGCTCTGGAGAAACAGCTGGAGCAGTGCACAGCCTTGGTAAATGACATTCACACTGTCCAACCAAGTCTGAATGGAATCAATGAGGTGGGTCAGGCCTTAAAGAGGGAAGCAGAGACACCATTTGCCATCAAAATCCAGAGGATGCTGGATGAGCTCAATGCTCAGTGGGAGCTCATCTGCAAACAGgcctatgcaaaaaaatctgcccTGAAAGGCGGACTGGACATGACGGTTAGTTTAAAGAAGGAGATGCAGGAGATGCAGGAGTGGATCACACAGGCAGAAGAAGATTATCTGGAGAGAGACTTCCAGTATAAAACACCTGAAGAACTCCACAAAGCAGTGGATGAACTAAAGAGAGCTCAAGAAGAAGTCCATCATAAAGAAATCAAAGTCAACTTACTGACAGATAAAGTGATGAATTTCATTGCTAAGgctccaccagcagctcatgATGCCCTAAAGACAGAACTGGACGTTCTGACCTCCAACTACCATCGGCTGTGTAGCCGGCTCGATGGGAAGTACAAGACACTAGAGGAGGTTTGGGCTTGCTGGTGTGAACTGCTGTCCTATTTGGAGCAGGAAAATGCCTGGATGGATATCCTAGAGAAGAAACTTGATGAGACAGAGAATTTTCAAGGGGGCGCAGATGAGATAGCAGAAGCTTTGGCTTCTTTAGATATGATGATTAGGGAGCATCCTGAGTATAATCGAAACCAAATCCGAGAGTTGGCCCAGACCCTTATGGATGGCAGGGTACTCCATGAGCTCATTCACAGAAAGGTAGAGGACTACAACATTCGTTGGGATGAACTTATGCAAAGGGCATTACAAAGACAACAACAGCTAGAGAAGAGTTTGCAGTGGGCTCAAGAAAATGACAGAACTTTACGACTAATCCAGGATTCTCTGAACACAACTGATCGTCATTTAACTGCATATCTTGCAGATGGTATAGATGCTGCTCAAATACCTCAAGAAGCTCAGAAAATTCAGACTGAGCTGGGTGGTCATGAGGTGACTCTGGACAGTATGAAGAAAAAGGCCAGTGAAGCAGATGCATCAGATAAAGTGATGGCAGAGATTGATGCAACATATgatAAACTGTTGGAGGTAAAAGCAAAGTTTCGGCTTTTCCAAAAGCCAGCTAACTTTGACCAGCGATTGAAGGAATGTGAGCAGGTGCTGGCGGAAGTGAAGGGTCAGTTGGGGGTGTTAAATATCGGCAGTGTGGAGCAGGAAGTGGTGCAGTCCCAATTGGAGCAGTGCATGAAGTTATATAAAAGTCTGAGTGAAGTGAAATCGGAGGTGGAGATGGTAATTAAGACAGGAAGGCAAATAGTGCAGAGACAACAGACCGAGCAGCCCAAGGAGTTAGATGACCGTTTGACAAGTCTTAAACTTCTCTACAATGATTTGGGTGGACAGGTGACAGAAGGAAAGCAGGAACTGGAAAAGAGTCTGAAGTTATTGAGGAAATTTAGGAAGGAGGTGAATAGTCTGAcagagtggttagcagctaCTGACGGAGAACTGACTCTCAGGTCATCAGTGGAGGGGATGCCCAATGACCTGGAGGCAGAGTTGGTCTGGGCCAAGGCCACACAGCAGGATACGGAGCGACATGTGGCCCAACTCAATTTAGTAAGAGAGCTATCAGAGGCTCTAAAGGAGATGCTGAAAGGGCAGGAAAGCCTGATAGACGACAAGGTCAGCCTTCTGAACTGCAACTGGATTGCTGTGACGTCGCGCAGTGAACAGTGGCTGAATTTGCTGTTGGATTACCAGAGTCAGCTGAAAACTCTAGATCAGAATGTCACACATATTAATGCCTGGATGGATTCAACTGAGGCTCAGTTGGACAAGATGGAAGTTCAAGGCTGCAATGAGCATGTTCTCAAGGGTCTGCAAGCTGAGCTGGAAGAAATGCGTGTAAAAGTGGAAGCTGTCCAGAATCTAGCGGAGGACCTTATTAAGAACAGAGGAGAACACTGTAAAGCTCAAGTGGAACCTAAGTTGCATCAGCTTACTCAACGCTTTGAGATGGTGGCCAAAAGGATGTTAAATGCACAGGCCTCATCCCAAGAGTTAGAAGATTATTACAGACAAGCTAATATGTGGCTGCAGCTGCTGGATGAAGAGATACAACTGGGGGAAAATATCAAGGAAGATGATTTTCTTGAGGAACCAGCAGTTGATGAAAATGCACTGAAGGAGCTCTTTCAGAGAGGAGAGAATCTACTGAGGAGAACCACAGATCCAGATCATGGGACTGTTCATGAAAAGCATACTATGCTTCATGATAAATACAACACCCTGAAGGCTCTGAGAGCCGTAAGGAGGAAGCGGGCCCTTTCTCTTGCTCCTCAGTGGAATCAGTTCTGTAAGAAATCAGATGATATGATGCAATTTCTTGACAACATTGAGAAGAAGGTGACAGAGCTGCCTGATCCTGCTGAAGAATTAATAGTGAAGGAGATTGGGACTAAGATTGAAAGGCAGCTCCTTGAACTTGAAGAGGTTCGGAGACTTGGCCACATGCTCTCAGAAGGTGGCATGATCAAGCTTGTGGAGCCACGGCTGATTCCCATTAATAAAAGATGGGAGCAGCTTGACATTAAATTTGCACAAGTACGACACATGAGTGAAGTGCAGGATCTGCTGCGGTGCATTGCTGAAAATGAAGCACGGCTGAACTCGCCTGTATGCTGCTCTGCTGCTACGGAAAACCTTCCCCAACAAGAAAAGTGTCTGAAGGAAGTGAAATATAATCTGGAGAAGCTTGAGACTCGAGTGGAAGAAACTTTAGACAGAAACAAAAGGCAGCTTCAGGAGAATCTACTGACTCAGCTCCTCAGCACTAACTGGGACAACCTGAAGAAGCTCTATGAGGACAGACTGCTACATTTTGACAAATGCAAGACATTTAGCAATGATATAAACGCTCTTCAAGACTGGTTGACTCTTGCAGAGAAATCATTAGCACTGCATGAAGAAAACCCAGAGCTGAGCAGAAGAGAAATCAAGGATCTGCAGGAAGATTTGGAGAAGCAGGAGGCAGCAGTCAAAGGGCTAAATGTTCTGGGTCAACACCTGGTTCTGCAGAGTAGAAAAGAAGATGGAGATCACATTAAACAGCTGCTTGGTTCAGTTAATACTCGCTGGGCCAAAGTGTTCAAGCAGCTGACTGAAATCAGAAGAAGATCTGCAGGGGCAAACATTGTAGTTGCTGAGCTTCATGAAGATGTGAGAGAGTTTCAGGCTTGGCTGGATAAAGCAGAGGATGTCGCTGCTTTGCCTGTACAACCAGACCATCGAGAGCAGCTCACCACCGCCTTAGAAAAAGTGAAGGCTCAGGTAACAGACTTGCCAAGTAGAAAGCAGACCTTACAGAAAATGAACACCAAAGGTTCATCCCTCCCTGCTGATAAAAGCAAACCACTGGAGAACCATTTAAGGGTTATAAATATGCGATGGGCTAAGGTTTCTTCTGATCTGCCTGAGAAGCAGCGACAGATCGAAGATCTGCTGAGAAATTTAAATTTATACCAGGAGCAACTCTTCAAGCTTTCCACCTGGGCGTCCACAACTAGGTATCAGCTGGAACAGTCACCTGGAGATGTTGACCATAAGGTTGATGATGACGTTCAGTCCAAGAAGCCAGAGGTGGAAGCAGTTTTAGCTAAAGAGAAACCACCAGTCCAGCCTGAAAGGGGACAATTTGATGCTCTTAATGTAGATTGGATAGCCATTAACATGATACTTAAGGAATGGAAAAATAAGTGCCAAGTTGCCGGTTTAACAGGCAGTGCCCCAGGAGATGCCTCAGCACttgatcattttaataaatcCTGGGCAGAACTTAACAACTGGCTGTCTCTGCTGGATCACATGCTTCTGTCTCAGAGAGTGTTAGTAGGAGATTTGGATGAGATCAGTGACGTGACAACAAAACTCAAGTCCTCACTGCAGGAAATGGAGCAAAGATGTCCCCAGCTGAATAAACAAATCACTGCAGCGCAGAacctaaaaaacaaaaccaacaaTCCTCAGACACGCGCTACTATCACAGATCAGATTGAGAACTTACAAGCTCACTGGGAAGACTCACACACCAAAATGATGGAGCGGCTTCTTCAACTACAGAAAATGTATAAAGACTCCAGTGATTGGCTAGATGCCAGAAAAAGAGTGGAACCTCTGATTAAACAAGCCAGTGAAATCCTGGAAGCCTCTCAAAGTGCTGATGATTTCAAGAAACTTGGCAAGAATATACAACAGTGGCAAGCTCAAGTAGATATCACCAACGGGCTGGCAAATAACCTTCTGACTCATTATGCAGATGATGACACAAGCAAGGTTAAACAGCTGACTGAGAGCATGAACATGGGTTGGGCCAACATCAAAAAACGGGTAGGGGATTCAGAGACAGACCTGGAGGCTAGACTACGGCAGCTTCAACACTTTCAGATTGACCTGGAAAAGTTTATGAATTGGTTAACTGAGGCAGAAACTACAGCCAACGTCCTGCAAGATGCCACATACAAAGAGCGTCTTCTGGAGAACCCAGCTACAGCCCGCCGCGTATTAGAGCAATGGCAGGACCTCCAGAGGGAGATTGATGCCCACACAGACACTTACCATTCATTAGATGAAAATGGACAGCGTATAGTGGCGTCTCTGGAAGGTACAGAAAATGCAGTAGTGCTTCAGAAACGACTTCACAACATGGGACAGAGATGGCAAGAACTGAACCAAAAAGTCATTAGTGTCAGGCCTCACTTGGATGCCAGTATTGAGCAGTGGAAGCACTTTCACATGTCCTTGCAAGAGCTGCTTCACTGGCTCCAGTTTAAGAAGGAGGAGCTGGACCAGCAGAAACCAGTGGGGGGGGATGTAGCAACTGTGCATCAGCAGCTGATCACACACAAGGCCTTTAGGAGGGAGCTAAGCACTAAAGAGCCATCGATCAGTGGAGCTCTTGAGAGTGTGAAGAGTTTCCTGAAAGAGATGCCGAGTGAAGAAGCTAAACAGAGGCCTGGTCAGAGAGAAGAAAGAGTTCAAAATGTGGAGCGCATTCTGCGCAAGGAGGCAGAAGATGTGACGACACAGTGGAGGGAGCTGGGCATAGCTGCTGTTGATTGGCAGCAACAGCTGGAGTTGGCTTTGGAGAGACTGATGGAACTTCAAGATGCACAGGATCAGTTAGATTTCAAGCTTCAGCAGGCTGAGATGATAAAGGACTCATGGGATCCAGTTGGAGACATACTTATTGACAACCTGAGCAAACAAATGGACACTGTTAAGGCGTTTCAGGAAGAGATAGCTCCCATTCAGGAATATGTAAACCAAGTCAACACACTTGCTTCTACATTCAGAAGTCCTGGTATTCAGCTCTCACACGACAACCTGAACAGAATTGATGACCTCAATACGCGATGGAGACTGCTGCAGATTTCTATTGAAGGGTATCTGACACATCTTACAGAGGCCCACAGAGACTTAGGACCTCATTCTCAAAATTTCTTACAAGCCTCTGTTCAAAGTCCTTTTGAACGCTCTGTTTCTCCCAACAATGTCCCCTACTATATAAATATCCCACAAACCACCAGACGCAAACAACATGTTGGGACCATCCAAAGATGGCTGAGCTCTACCAATCTCTAGcGGATCTGAACAACGTACGGTTCTCTGCATACAGGACAGCGATGAAGCTCCGACGTCTGCAGAAAGCTCTGTGCTTGGACCTGCTGGGAATGTCAGCAGCCTGCGAGGCGTTTGAGGTCCACAACCTGAAACAGAACGAGCAGTTCATAGATATCATGCAGATGATCAACTGTCTGACCAACATCTATGACCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139925 lncRNA upstream 22987 14377759 ~ 14387696 (+) True G103517
TU139922 lncRNA upstream 35151 14374087 ~ 14375532 (+) False LOC111193540
XR_002650592.1 lncRNA upstream 35396 14373654 ~ 14375287 (+) True LOC111193540
TU139912 lncRNA upstream 66215 14343670 ~ 14344468 (+) True G103505
TU139898 lncRNA upstream 109394 14300862 ~ 14301289 (+) True G103495
TU139979 lncRNA downstream 71940 14623642 ~ 14624134 (+) True G103553
TU139978 lncRNA downstream 73456 14625158 ~ 14633223 (+) True G103552
TU139976 lncRNA downstream 74074 14625776 ~ 14630761 (+) False G103552
TU139977 lncRNA downstream 74074 14625776 ~ 14628009 (+) False G103552
TU139972 lncRNA downstream 75376 14627078 ~ 14630972 (+) False G103552
XM_022674753.1 mRNA upstream 1287 14388458 ~ 14409396 (+) True knl1
XM_022674754.1 mRNA upstream 1287 14388458 ~ 14409396 (+) False knl1
XM_022674749.1 mRNA upstream 80268 14308926 ~ 14330415 (+) True LOC103031792
XM_022674748.1 mRNA upstream 80268 14318198 ~ 14330415 (+) False LOC103031792
XM_007241890.3 mRNA upstream 120524 14282927 ~ 14290159 (+) True LOC103031172
XM_022675040.1 mRNA downstream 447753 14999455 ~ 15288847 (+) False LOC103032764
XM_007259064.2 mRNA downstream 1684326 16236028 ~ 16254238 (+) True LOC103039857
XM_007259063.3 mRNA downstream 1769420 16321122 ~ 16325115 (+) True LOC103039552
XM_007259060.3 mRNA downstream 1821088 16372790 ~ 16383498 (+) True taf5
XM_022674769.1 mRNA downstream 1836354 16388056 ~ 16418412 (+) True pdcd11
TU139893 other upstream 149144 14260625 ~ 14261539 (+) True G103490
TU139745 other upstream 475016 13929065 ~ 13935667 (+) True G103376
TU138581 other upstream 3115868 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 3884523 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 5576752 8833840 ~ 8833931 (+) True trnar-ucu_1
TU139970 other downstream 66933 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 139341 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 1899473 16451175 ~ 16458209 (+) True G104000
TU140514 other downstream 1950474 16502176 ~ 16507777 (+) False col17a1
TU140710 other downstream 2336694 16888396 ~ 16893723 (+) False LOC103035065

Expression Profile