RNA id: XM_022674763.1


Basic Information

Item Value
RNA id XM_022674763.1
length 3402
RNA type mRNA
GC content 0.46
exon number 25
gene id dmd
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14410683 ~ 14664759 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTCTTTACACACGTCAGCGAAAACAAGTGTCTTCTCATACTGTTTTCATCTGATCAGTCTCTCGCTCTGTGGAAATGTTACACAGGAAGACATATCACATTAAGGACCTCCAGAGGGAGATTGATGCCCACACAGACACTTACCATTCATTAGATGAAAATGGACAGCGTATAGTGGCGTCTCTGGAAGGTACAGAAAATGCAGTAGTGCTTCAGAAACGACTTCACAACATGGGACAGAGATGGCAAGAACTGAACCAAAAAGTCATTAGTGTCAGGCCTCACTTGGATGCCAGTATTGAGCAGTGGAAGCACTTTCACATGTCCTTGCAAGAGCTGCTTCACTGGCTCCAGTTTAAGAAGGAGGAGCTGGACCAGCAGAAACCAGTGGGGGGGGATGTAGCAACTGTGCATCAGCAGCTGATCACACACAAGGCCTTTAGGAGGGAGCTAAGCACTAAAGAGCCATCGATCAGTGGAGCTCTTGAGAGTGTGAAGAGTTTCCTGAAAGAGATGCCGAGTGAAGAAGCTAAACAGAGGCCTGGTCAGAGAGAAGAAAGAGTTCAAAATGTGGAGCGCATTCTGCGCAAGGAGGCAGAAGATGTGACGACACAGTGGAGGGAGCTGGGCATAGCTGCTGTTGATTGGCAGCAACAGCTGGAGTTGGCTTTGGAGAGACTGATGGAACTTCAAGATGCACAGGATCAGTTAGATTTCAAGCTTCAGCAGGCTGAGATGATAAAGGACTCATGGGATCCAGTTGGAGACATACTTATTGACAACCTGAGCAAACAAATGGACACTGTTAAGGCGTTTCAGGAAGAGATAGCTCCCATTCAGGAATATGTAAACCAAGTCAACACACTTGCTTCTACATTCAGAAGTCCTGGTATTCAGCTCTCACACGACAACCTGAACAGAATTGATGACCTCAATACGCGATGGAGACTGCTGCAGATTTCTATTGAAGGGTATCTGACACATCTTACAGAGGCCCACAGAGACTTAGGACCTCATTCTCAAAATTTCTTACAAGCCTCTGTTCAAAGTCCTTTTGAACGCTCTGTTTCTCCCAACAATGTCCCCTACTATATAAACCACCAGACGCAAACAACATGTTGGGACCATCCAAAGATGGCTGAGCTCTACCAATCTCTAGcGGATCTGAACAACGTACGGTTCTCTGCATACAGGACAGCGATGAAGCTCCGACGTCTGCAGAAAGCTCTGTGCTTGGACCTGCTGGGAATGTCAGCAGCCTGCGAGGCGTTTGAGGTCCACAACCTGAAACAGAACGAGCAGTTCATAGATATCATGCAGATGATCAACTGTCTGACCAACATCTATGACCGACtggagcagcagcacagcagcctTGTGAATGTACCGCTGTGTGTTGACATGTGTCTCAACTGGTTGCTGAACGTTTATGACACAGGAAGAACTGGGAAGATTCGGACCTTATCTTTTAAAACTGGAATAATCTCACTCTGCAAGGCTCATCTTGAAGATAAGTACAGATTTCTGTTTAGACAGGTGGCAAGTGCCACAGGTTTCTGTGACCAGCGCCGCCTTGGCCTTTTACTGCATGACTCAATCCAGATCCCAAGGCAGCTGGGAGAAGTGGCTTCATTTGGAGGAAGCAACATCGAACCAAGTGTGCGCAGCTGCTTTCAGTTTGCAAACAACAAACCAGAGCTCGAGGCTTCAGTCTTCCTTGATTGGATGCGTTTGGAACCCCAGTCCATGGTCTGGCTTCCTGTACTTCACCGCGTGGCAGCTGCAGAGACAGCCAAGCATCAGGCCAAATGCAACATCTGCAAAGAATGCCCCATTATAGGCTTCAGGTACAGAAGCTTAAAGCACTTTAATTATGACATCTGCCAAAGCTGCTTCTTCTCTGGCAGAGTCGCCAAGGGACACAAGATGCAGTACCCCATGGTTGAATATTGCACTCCAACAACCTCCGGAGAAGATGTGAGAGATTTTGCCAAAGTGCttaaaaacaagttcagaacaAAACGCTATTTTGCCAAGCATCCACGTATGGGTTACCTTCCTGTACAAACTATTCTGGAGGGTGATAACATGGAAACTCCTGTTACACTCATCAACTTCTGGCCTGTTGATCATCCTCCAGCATCTTCACCACAGCTGTCCCATGATGATACCCACTCACGCATTGAGCATTATGCCAGCAGGCTAGCAGAAATGGAAAACAGGAATGGCTCGTACATGACTGAGAATATTTCACCTAATGAGAGCATGGATGATGAACATCTACTCATTCAGCACTATTGCCAGAGTCTCAATCAGGGCTCTCCCCTGAGCCAGCCACAGAGCCCTGCTCAGATCCTCATATCAATGGAGGGGGAGGAGAAAGGAGAACTTGAGAGAGTTCTTGGTGATCTAGAGCAGGAGAACAGGAAGCTGCAGGCAGAGTACGATCGGCTGAAAAAGGCTCATGAGCACAAGGGGCTGTCTCCACTCCCCTCACCTCCACAGATGCTGCCAGTTTCACCTCAGAGTCCTCGTGATGCTGAGCTGATCGCTGAAGCAAAATTACTAAGGCAACACAAGGGTCGTTTGGAGGCAAGAATGCAAATTCTGGAAGACCATAACAAACAGCTGGAGTCTCAGCTTAAGCGGCTCAGACAACTACTGGAGCAGCCACAGACTGAGTCCAAGGTGAATGGCACTGCCCTGTCTTCTCCTTCCACTGCCTCCCAGAGATCTGATACCAGCCTGGCCTCATTGCGTGTGGCCGCAAGCCAAACCACAGAGACAATGGGTGGTGATGAGCTGCCCAGTCCCTCCCAGGATGCAAGCACTGGATTAGAGAAGTGATTGAGCATCTAAATCATTCTTTTCCTCATTGCAAAGGAAGTGGACGGCAAAATCAATAAGAGGCCCAGGGGCTAACATGAGAGGTCTAATCCATACGATGGATAACACTGGATTGGCCATGGAGTCATTGGATGGTGTATTGAGAGAACAGCAGGGTTTAGACTGAAAACATTGTCTCCTTATGTGCATGCTTTTGTAGTGTAAACAGCTGGACAGGATATGTTTACAAtgtgaaatcaataaaaatatatttttctgaagGATCATTGTTCCAAATGATAGATTTCAgtagtttattataaatatagaaTTGCTTTATTATGAAATGAAACAGGCTTTTAATCTTCTAtgcaattgtttaaaaatgGATATGTAAGAAAAATGTGTGATAACCTGTAACACTGTGTCCCATTTCTTTGTACAAAATGGTGGGcacattttaagtgatttatccTAATGAGTGATTGGTTATAAATATAAAGGGTGCTTTATCAACTAATTTTGTTTGTAACACGTAACAAATGCACATTAAAactctgctgtgtgtgattgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139940 lncRNA upstream 11863 14431912 ~ 14510140 (+) True G103524
TU139950 lncRNA upstream 46381 14475207 ~ 14475622 (+) True G103533
TU139925 lncRNA upstream 134307 14377759 ~ 14387696 (+) True G103517
TU139922 lncRNA upstream 146471 14374087 ~ 14375532 (+) False LOC111193540
XR_002650592.1 lncRNA upstream 146716 14373654 ~ 14375287 (+) True LOC111193540
TU140205 lncRNA downstream 130487 14795246 ~ 14795613 (+) True G103738
TU140213 lncRNA downstream 138341 14803100 ~ 14805859 (+) True G103746
TU140214 lncRNA downstream 141725 14806484 ~ 14806972 (+) True G103747
TU140215 lncRNA downstream 142698 14807457 ~ 14808320 (+) True G103748
TU140247 lncRNA downstream 203187 14867946 ~ 14868171 (+) True G103779
XM_022674753.1 mRNA upstream 112607 14388458 ~ 14409396 (+) True knl1
XM_022674754.1 mRNA upstream 112607 14388458 ~ 14409396 (+) False knl1
XM_022674749.1 mRNA upstream 191588 14308926 ~ 14330415 (+) True LOC103031792
XM_022674748.1 mRNA upstream 191588 14318198 ~ 14330415 (+) False LOC103031792
XM_007241890.3 mRNA upstream 231844 14282927 ~ 14290159 (+) True LOC103031172
XM_022675040.1 mRNA downstream 334696 14999455 ~ 15288847 (+) False LOC103032764
XM_007259064.2 mRNA downstream 1571269 16236028 ~ 16254238 (+) True LOC103039857
XM_007259063.3 mRNA downstream 1656363 16321122 ~ 16325115 (+) True LOC103039552
XM_007259060.3 mRNA downstream 1708031 16372790 ~ 16383498 (+) True taf5
XM_022674769.1 mRNA downstream 1723297 16388056 ~ 16418412 (+) True pdcd11
TU139893 other upstream 260464 14260625 ~ 14261539 (+) True G103490
TU139745 other upstream 586336 13929065 ~ 13935667 (+) True G103376
TU138581 other upstream 3227188 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 3995843 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 5688072 8833840 ~ 8833931 (+) True trnar-ucu_1
TU139988 other downstream 26284 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 1786416 16451175 ~ 16458209 (+) True G104000
TU140514 other downstream 1837417 16502176 ~ 16507777 (+) False col17a1
TU140710 other downstream 2223637 16888396 ~ 16893723 (+) False LOC103035065
TU140760 other downstream 2455088 17119847 ~ 17127310 (+) False LOC103031769

Expression Profile