RNA id: XM_022674798.1


Basic Information

Item Value
RNA id XM_022674798.1
length 5057
RNA type mRNA
GC content 0.52
exon number 32
gene id map4k4
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17213834 ~ 17317203 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcactcactcagtggCTCGCCTGCTCAgtgaatcagcagcagcagcagcacgccGGCTTCCTGTGTTTGTGCGGACTCAAGTCTGCCACCTGGACATGGACTAAGCGCCTCTCCGCCTTCTGCGTATTTTTGTGGCCGTTTTTCCAGCCTGTAGAGCGGCCGCAGATGTAGAAGTCTAGCCTGGAGTCTGGACTTAGAGTGAAGATCAGCCTCGCCGAGCgcgttttctgttttttagcgAAAAGATGGCGAACGATTCTCCGGCTAAAAGTCTAGTGGATATAGACCTCTCTTCACTGCGGGACCCAGCCGGGATATTTGAATTAGTGGAAGTGGTTGGAAATGGCACGTACGGACAAGTCTACAAGGGCCGACATGTCAAAACAGGACAGCTCGCGGCCATCAAGGTCATGGACGTCACGGAGGATGAAGAGGAAGAGATAAAGCTGGAGATCAACATGCTGAAAAAGTACTCGCACCACAGAAACATCGCCACCTACTACGGTGCGTTCATTAAAAAGAGCCCCCCAGGACACGATGACCAGCTCTGGCTGGTGATGGAGTTTTGTGGAGCTGGCTCCATCACAGATCTTGTGAAGAACACTAAAGGAAACAAGCTGAAGGAGGACCAGATTGCTTACATCTCCAGAGAGATCCTGCGGggACTGGCCCACTTGCATGCCCACCACGTCATCCACCGTGACATCAAAGGTCAAAACGTCTTGCTGACCGAGAACGCCGAGGTCAAGCTAGTCGACTTTGGTGTGAGTGCCCAGTTGGACCGGACAGTTGGCAGACGAAACACTTTTATTGGCACACCTTACTGGATGGCTCCTGAGGTCATTGCCTGCGATGAAAACCCTGATGCCACATACGATTACAGGAGTGACCTGTGGTCTTGCGGTATTACTGCTATTGAAATGGCGGAGGGCGCTCCACCACTCTGCGACATGCACCCGATGCGCGCACTTTTCCTTATCCCCAGGAACCCGCCTCCCAGGCTGAAGTCAAAAACCTGGTCCAAGAAGTTTTTCAGCTTCATTGAAAGCTGCTTGGTGAAGAACTACACCCAGCGACCTCCCACAGATCAGCTCCTGAAGCACCCATTCATCAGAGACCAGCCCAACGAGAGGCAGGTCCGCATCCAGCTTAAAGACCAGATCGACCGCACCCgcaagaagagaggagagaaagATGAGACGGAGTACGAGTACAGCGgaagtgaggaagaggaggaggaagctcCGGAGCAGGAGGGAGAGCCCAGCTCCATTGTGAACGTGCCCGGAGAGTCGACGCTTCGTCGAGACTTCATCCGTCTGCAGCAGGAGAACAAGGAGCGCTCTGAAGCTCTGAGGAGGCAGCAGCTCCTGCAGGAGCAGCAGCTTCGCGAACAGGAGGAGTACAAGCGCCAGCTGCTGGCTGAGCGCCAGAAACGTATTGAGCAGCAGAAGGAGCAGAGGAGGAGGCTGGAGGAGCAACAGCGCCGCGAGCGAGAGATGAGGAGGCAGCAGGAGCGAGAGCAGAGGCGACGGGagcaggaggagaagaggaggatggaGGAGATGGAGCGACGCCgcaaagaggaggaggagcgcAGGAGGGccgaggaggagaagaggaggaacGATCGTGAGCAGGAGTATATCCGTCGTCAGCTGGAGGAGGAGCAGAGGCATCTCGAaatactgcagcagcagcttcttCATGAGCAGGCCATATTATTGGCTGATGAAAGACACCGCAAGAACATTCAGGGTTCCCCTCAGACTGCTCCACCCAAGCAGCCCCCCATACCTCCCCGCTCTTCTGAACCGTACTCTAATGGCAACTCCGCCTCGGAGTCTTCAGGCATGCATAAGCCTATGGAGCCACAGGTCCAGTGGTCTCACCTGGCCGCTCTAAAGAGCAACGCATCCGCTCCCCACGTGTCTCGCTCCCATTCCTTCAGCGACCCCGCTCCtagttttgcacatctccaTCTCCGCTCTCAGGAGCcccaccagcaccaccaccacccagcgcaTCCCTCACGCCCCGAGCACCTGCAGTCCCATTCGCAGAACAACAAGGCCCCTGAGACGGGCCATAATGACGAGGTCCCCCCCAGGGTTCCAGTGAGGACAACATCCAGGTCTCCAGTGCTGTCCCGTCGAGATTCTCCACTTCAGAATGTCCAGCAAAGCAACCAAGCTGGACAGAGGAATGCTGGAAGTACTGCAGAGCCGCGCCTTTTGTGGGACCGAGTGGAGAAGCTGGCCTCCAGACCAGGCAGTGGAAGCTCCTCTGGTTCCAGCAACTCCAGCTCTCAGGCTAGCTCTCAGAGCGGCTCAGGAGAGAAGTTCAGAGTCCGTTCTTCATCTAAATCTGAAGGTTCTCCACTTCAACGCTCAGATAATACTGGGAAAAAACTGGAGGAGAAGAAAGACTTTGTCCGACCGTCCCGACCTGCTGGTGAAGTGGATCTTACTCTATTGGCCGGAGAACAGCGTCCAAATGAAGATGCTCGCCCACCTCACAAGGTGACGGACTACTCATCGTCTAGTGAGGATTCAGATTCAGAAGATGACGATGAGGTGGAGCAGGAGCTCGGCAATGAGTCAACCTCTGGCGCGGAGGACTCTAGGaaCTCCGCAAAAATGAGCAATGGAGAGACTGAGTCTGTAAAGACCATGATTGTTCACGATGAAGCTGAAAGCGACCCGGCCACCACACCTTCAAAAGATGGCACTTTAATTGTCCGACAGAGTGTAGCTGAGATAAAGCGATTGGGTCCTGGGCCTGGTCCCGGGCCTGGTCCCGGTCATGGCCCTGTTCTGGGCCCCACTCATGCCCTCGGCCACCTGGAGCGAAATGGCATTGCAGGCCGTATTCATCTCTTGCCCGATCTCATCCAACAGAGCCATCATTCCCCCTCCCCCTCGGTCACCTCTTCCCCTGCCTCCAGCCACGCTAGCCCCTCCTCCATGTCCCCCCAAAACCTCTTGGACAAGCTGCTTGCCAGCGAGACACAGTCTGCCAGTAATACTCTTCAGAAACACAAGTCGTCTTCATCCTTCACTCCGTTTATTGACCCGCGCCTCCTACAGATCTCTCCCTCCGGTGGCACTTCTCTCAACAACATGGCCTTTGGGAATGACGGGCGGATTCAGGAGGTCTTGAGGCCAGATGCTTCGAGAAAGGGCTCGGTGGTTAATGTGAACCCAGTGAACACTCGCCCACAGAGCGACACGCCCGAGATCCGCAAATACAAGAAGAGGTTCAATTCTGAGATCCTGTGCGCCGCACTCTGGGGGGTGAATCTGTTGGTTGGGACAGAAAGTGGACTTATGCTTCTTGACCGCAGTGGACAGGGCAAGGTCTACCCGCTCATCAGCCGGCGTCGCTTCCAACAAATGGATGTTCTGGAAGGCCTTAATGTCCTCGTCACAATATCAGGAAAGAAGAACAAACTGCGAGTCTATTATCTGTCCTGGCTGAGGAACAAGATTCTGCACAATGACCCAGAGGTGGAGAAGAAACAGGGCTGGACCACAGTGGGCGAGCTGGAGGGCTGTGTGCACTACAAAGTCGTGAAATATGAAAGGATCAAGTTTTTGGTTCTCGCCTTGAAAAACTCAGTGGAGGTCTATGCATGGGCACCCAAACCGTACCACAAATTCATGGCATTCAAGTCATTTGGAGACCTGGCTCACAAGCCCTTGCTCGTTGACTTGACAGTAGAGGAGGGTCAAAGACTAAAGGTGATCTATGGCTCCTGCTCTGGGTTCCATGCCGTGGATGTGGATTCAGGGGCTGTTTATGACATCTACTTGCCCACACATATTCAGACTAGCATCCAGTCACATGCCATCATCATTCTTCCCAACACTGATGGCATCGAGTTGCTGGTGTGCTATGAGGATGAAGGTGTCTATGTGAACACATATGGCCGAATCACCAAAGACGTGGTGCTTCAATGGGGAGAGATGCCTACCTCCGTGGCATACATCAGGTCTAATCAGATCATGGGCTGGGGAGAGAAGGCCATAGAGATCCGCTCTGTGGAGACGGGTCATCTGGATGGTGTCTTCATGCACAAGAGGGCACAAAGACTCAAATTCCTCTGTGAGAGAAATGACAAGGTGTTTTTTGCTTCTGTACGCCAAGGAGGTTCCAGCCAGGTGTACTTCATGACTCTCGGCCGCACCAACCTGCTCAGCTGGTAAAGCTGCTGGGCCTCCAGTTTTGACTACAACAACTAAAAAAGACTGTTCCTGAAAATGCTGAAGAAATGGtgatggaaaataaaatctctaCCTTGAGCTGACATTTCTTCTTAGGTCATGTGCTCCACTGTGCGCACCAGCTCTGTGCTAGTGTGATTTCCCTCGCTGTGTCCTGGCCCTGAGAGGACGGACAGTCGAGCACAAAATTAAGAGAACGGAATTTGTCAAAGGGAGCAGCAGCAGTGCCCCCTGCTGCTGAAGGGCCTGTGGATGTTGCTGTGCAGTTTTGTGGTGTTCAGTCTACAGCATTACTCACCGCTCATCCAACTCCAGATATTCTATGGCGATTAATTCCCACCCTGTTGTAAAAACACagggtttccttttttttcctctattttGAAACATCAAGGGATATAAAACCCGAACATAATAATCTCTAGTTTATGTCGATGTATTTGTACCAAACTTTGATTGGCGAAAAAACAGATCAACAGCCTCTGACTGCTtgactgactgtgtgtgtaCCATCTCTCCTTTTTCCAGACTAGAGGGAATTCAGGGTTGGGGGTTGGAATGGCAGCCAGTGCCAGAAAAGgcttgggcttttttttttttttttcttctgtgaaTTTTGTCAACTGCCAAAACATCGGAGTCATACTGTATTATTGTGGTAGTCCAGGTTACTTTGAGGATTAATATTTTCAGGATTTTTAACAACATTGACTTTAGTGTGTTGAAATTTTATGCTGATGAAATTGCAGCATTgttcatatacagtacattgagtgtttttattttttaagcgtTGCACTTGATAAATAAATTCTTAGTTTCCTTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140772 lncRNA upstream 31298 17182296 ~ 17182538 (+) True G104177
TU140767 lncRNA upstream 74871 17134042 ~ 17138965 (+) False LOC103031769
TU140739 lncRNA upstream 166096 17046772 ~ 17047740 (+) True G104162
TU140723 lncRNA upstream 279353 16927224 ~ 16934483 (+) True G104151
TU140707 lncRNA upstream 352634 16860988 ~ 16861202 (+) True G104144
TU140779 lncRNA downstream 37226 17354429 ~ 17356491 (+) True G104183
TU140782 lncRNA downstream 96199 17413402 ~ 17417938 (+) False LOC111193547
TU140788 lncRNA downstream 164921 17482124 ~ 17485186 (+) True G104190
TU140795 lncRNA downstream 279945 17597148 ~ 17597444 (+) True G104196
TU140803 lncRNA downstream 384484 17701687 ~ 17701919 (+) True G104204
XM_007259034.3 mRNA upstream 14221 17183013 ~ 17199615 (+) True lonrf2
XM_007259035.3 mRNA upstream 64228 17142533 ~ 17149608 (+) True chst10
XM_022674790.1 mRNA upstream 74863 17119865 ~ 17138973 (+) True LOC103031769
XM_007259037.3 mRNA upstream 96615 17113310 ~ 17117221 (+) True LOC103032094
XM_022674789.1 mRNA upstream 104276 17081201 ~ 17109560 (+) True LOC103032412
XM_007259033.2 mRNA downstream 5042 17322245 ~ 17325366 (+) True LOC103030825
XM_022674800.1 mRNA downstream 89392 17406595 ~ 17419138 (+) True LOC111193547
XM_022674801.1 mRNA downstream 107740 17424943 ~ 17473397 (+) True LOC103032976
XM_007228697.3 mRNA downstream 575558 17892761 ~ 17896437 (+) True ing1
XM_007228693.3 mRNA downstream 617656 17934859 ~ 17944725 (+) True hsf2bp
TU140760 other upstream 86526 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 320113 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 706059 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 755627 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 2521637 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 1601857 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 3672070 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 3701835 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 4009989 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 5492876 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile