RNA id: XM_022674809.1


Basic Information

Item Value
RNA id XM_022674809.1
length 4243
RNA type mRNA
GC content 0.37
exon number 7
gene id LOC103032361
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18009302 ~ 18082462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagaaaagaagagagagggagagcgagggagcgacagacagacagacggacggacagagagacagacagacagtgagagcGAGTCCAGCGTGCAGGAGAAAGTGTAGCTAATATCTGTACTCTCGGTAAGGAATTCCAAATGGATGGAATGAAACCAGCCATGGAGACGACGGCCGAGGAGAACCAGGACGAGAGGGAGGAGAGCAAAGGTTGCTTGGACTGCTGCATTAAGTGTCTGGGCGGGGTGCCGTATGCCTCATTGGTGGCCACCATCCTGTGCTTCTCGGGTGTGGCGCTGTTCTGTGGCTGCGGACATGTGGCACTGACGGGCACCGTGACCATGCTGGAGAACCACTTCTCCCGCATCACATCTGACCATGCCACCCTTATCGACGTCGTCCAGATTCTGCAGTACATCATCTACGGCATCgcctccttcttcttcctctatGGCATCATCCTGCTGGCTGAGGGCTTCTACACCACCAGCGCCGTCAAAGAGATGCACAGCGAGTTCAAGACCACTGTGTGTGGGCGCTGCATCAGTGCCATGTTTGTGTTCCTGACCTACATTCTGGGCTTGGCTTGGCTGGGCATCTTCGGCTTTTCCGCTGTGCCTGTCTTCCTCTTCTACAACATGTGGACCACGTGTGCCGCTATGAAGTCTCCCATCGCCAACCTTACCTCTGTGGACAACATCTGTGTGGATGTGAGGCAGTACGGAGTCATCCCTTGGAATGCTGATCCTGGCAAAGCATGTGGGCAAAACTTGGCTGATATTTGTAACACCAGTGAGTTCTATTTGTCCTACCATCTGTACATTGTCGCatgtgctggagctggagccaCTGTGATTGCACTGATCCACTATCTCATGATCCTGGCGGCTAACTGGGCATATCTGAAGGGGGCGTGCCAGCAGACCCACGCCTACCAGGACATCAAGACCAAGGACGACGCTGAACTGCAGGACGTGCAGTCGCGCTCTAAGGAGGGCCTCAATTCTTACTCATAAATAAAGGCCAAGTTAACCCGCATGTGGTGAAAAATGACATATTGGCTTGAGAAAACATCTTTAAATGTATGCAATATATCTCATATTTCTGattatgacaatattattattataaggttaTTATTGATTCTGATCTGTTTAtggatgtttattttattctatcttgAAAGATTAAGTGGAATTATCTCACTGCACTGCCAGATAACTATTAATGCTTGAAGATTCTGTGTGAAGATTCTGCTTGAAGTGAACGTAATTTTACTTGATTatataatttaagaaaaaaattgtcTATATTACTTTTAACAAAATCGATCTAGAAATAGGCTGATAATCTCATAATAATtctatgaaaatgaaaaatgttgaaaatataTTGTCTACATTCAAGATGTTCTCGCCAACATggatttttttccagtgcagatCAACTTAAACCTTCTTTTAaccccacaacacacacacacacacacacacacacataatcacacacacaaacaaaaacagtacaacGCTAACTAACATGGCCTAGTAGTGTTCTACAACAACAGGGCGTTATATCAAATCAGCAGTCATAAGCAGTTACGACCACGGCGTTGGACATTGGTTCTTGGTtttatgtaaaagtaaaagaaatgacAGATCCATTTCACAGGTTGTGCAGTTAATGATGAATAGGTGTCTTTTATTCGATGTTGGTGAGGTCGTatgaaaatgcatgtgtaattatTTCAGTGCTCGTTGCTAATGTCAGggaaaataatgagaaaaaaaaacgtattgaaAGTGCTGAGCCGTGGTCTTAACCAGCTTGTCTCTGACTCCGTGGCGCACTGTTGAAGTACAGCACTACCTCACAGCTGTTACTGTCTGCACTAACACGTTacagacattttgcaggaacttccttttttggtgttttatacatatataaatatatataaatgtgtgaaagtgtatgAATGTTGTTGGTTTTTTTAATACTTAACGTATGCCAGGTTTATTATGATATTTCTCtggtctttttctcttttactctcgtTCTCGGTTACCAACAAACTTTACTCTTGTTTTTCCTGAACtgctttttttaatactaatatattatcttttttttttctttttctcgttTTTATACTGCTACTTGATACGTTGCACTACTCTGAAATGAATAGACTACATACAGTCACATTTTTGGAATTTCTCTCTTTTGGGAGATCAGAGGGTGGGTTCTCTGAGAAGTGTAAATTTATAGATCAATTAAATTGTGTTAATTGTAACCCAAAATTAATAACTATGAAAATGACTGAAGAAATAACGAACAGAAGTAGTGCTTGATATTAGCTTCAGTTAAGTGTGTACATCAGTTTCACATGAATAAAATACTTGCAAgtattataaaaacaattagTATACAACAATTGTAGGGTACAAGTAAAGCTACATTCAACTTTATTATTGTAGATTACATTATTGTATTTACTGTCAAAAGTAATTACATAAGGCTGATGTATTACTGTGTATTTTATTCATATGAAAccaatatacacatttttagtgtaatatatataatattatgaaGAGAACTGAAATGAATTAAGTGTGACTACATTGAAATGTATTCtgataaatgaaaataattaaaaataaaatatatgtcatgtacatttcttaatttaaacagaaaaactTTTAAGGGCATACATTTTAGGCACAGAAAAATAGCTGTAggatactaaataatattaaatttttaattaatatgtgCCCAAAAACTGCATTGTATTCAGTAGATTTGCACTGAATTGACTTGATTAATGTGTGTACAAGATTTCCACAGAAATACAAGATAATATCTTAATGCATCCATTgcgaaaatgaattaaatgataATACAAGATTGTATTGTTTGTTGGCTAATTTATAGGTCACTGCCCACATACTTTTTTGGGTCCTGTATATTGACCTTGATGTAAAGCCATCCATCCACTAGAGGTTAGTACAGAGTCAAACCAAAACAATTAGTCAAGATACTttgattgatattgatattatcTAACATTTACATAGTGATCTAATTAAAAATCGTTTTGGAttttgatggaaaaaaaatatatgttgaaTTGTGCATCATATGATCAGAAACACAATTTACCAAGataaggaaggtcagtttttatttgtttaggttGGTTTagtgcatatattttttatatattctgtAAAAAAGGAATGGTGTACACACACAAATCAAGTCTATTTAGTGCCTGACTTGTTTCAGGACTGCTCATATTGATTAAaaatagagcaaaaaaaaaatcccatgactaaaattacaatatgatatgatattctttttttctgaacttgCTGTTgattctggtgtttttttttctttgctatcTTCTTGTGGAACCTTCTCATGGCTGGCTTGATATTTACCAAGAGTTCTTTTGTGAGTGGATCAGTGGTTTGCTTCAATATGTGGATTTGTGTCATCCTGAGACCGCCACATACAAATGACAGGAATTCCATGAtttttacagtaatacagtaataagaCTGAGCCTTGTTTTCACAGCGTAgtggtttctctctctttctcactacTTTGGATTCTtgccatttttctcttttatttcgtTAACTCTGAAacaagcgaaaaaaaaaaaacatttaaacactaaCTCTTCTTTCTGACgtctctgaactctgaactttaAGCATGTTAGTATTGTccttacatacatacagtggTATTTACTACCGATATAAACTGTTCTCTTGCTGTATGTTCTGTTCTGTTAAAGGGACGTGACTGCAGGGATGTGCCCActacttctctctttttctttttgttcttcaCCCTGTTTTTTGTATAAGGAGATGTGTGCCTGAATGTTCTATCGTTCCCTTGTTATTGCATGAAGGAGagataatattctattttatttttttttctttcgcgGTTCCATAGGTGATGTGTAGTCCACTGTTCTGACGAACTATGGTAGACAGTGTTTCCTTCTTCCCCGCTTTATCCCCCTTTTCCTTCCTTCCCTCCCACCctcccttttaaaaaaaaataacccatTGTACGTTGATGGAAATTGTAGTCCTAGATGTTTCATAGTCCATTTTATTTGAAAAGTCAAATGTTTTATGAATCCTGTATAGTGATGATTTTTGTAACCTTCTctagtaaaataatattttctatGATCGACA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141021 lncRNA upstream 37206 17924950 ~ 17992449 (+) True G104383
TU141032 lncRNA upstream 37508 17970934 ~ 17992147 (+) True G104392
TU141037 lncRNA upstream 46851 17977296 ~ 17982804 (+) True G104396
TU141012 lncRNA upstream 64180 17896669 ~ 17965475 (+) False G104374
TU141016 lncRNA upstream 123656 17903955 ~ 17905999 (+) True G104378
TU141105 lncRNA downstream 11581 18094043 ~ 18095156 (+) True G104445
TU141113 lncRNA downstream 88084 18170546 ~ 18170758 (+) True G104448
TU141106 lncRNA downstream 106248 18188710 ~ 18191210 (+) True G104446
TU141107 lncRNA downstream 106248 18188710 ~ 18191210 (+) False G104446
TU141109 lncRNA downstream 106248 18188710 ~ 18191210 (+) False G104446
XM_007228686.3 mRNA upstream 23144 17998315 ~ 18006511 (+) True gemin8
XM_007228687.3 mRNA upstream 23144 17998315 ~ 18006511 (+) False gemin8
XM_007228688.3 mRNA upstream 23144 17998315 ~ 18006511 (+) False gemin8
XM_007228692.3 mRNA upstream 66937 17950021 ~ 17962718 (+) False LOC103027494
XM_022674813.1 mRNA downstream 110236 18192698 ~ 18214872 (+) True LOC103032036
XM_022674388.1 mRNA downstream 253683 18336145 ~ 18337262 (+) True LOC111193482
XM_022674818.1 mRNA downstream 322044 18404506 ~ 18566714 (+) False arhgap6
XM_022674817.1 mRNA downstream 322045 18404507 ~ 18566714 (+) True arhgap6
XM_022674819.1 mRNA downstream 396617 18479079 ~ 18566714 (+) False arhgap6
TU140760 other upstream 902345 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1135932 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1521878 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1571446 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3337456 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 836598 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 2906811 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2936576 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3244730 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4727617 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile