RNA id: XM_022674813.1


Basic Information

Item Value
RNA id XM_022674813.1
length 3163
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC103032036
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18192698 ~ 18214872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATCCGGGTGCAGTTACACACGTGTGTCTCCTGCATGAGAAACATTAGGGTTTGTGCACGTGTGTGCGGCTTTACTTCTGTTCAGAGTCTCTGATGGATGATGTCAAGCTTTAAATCGTAACCGGGGAACAAGATGAAGTTTTCATACAAGTTTTCCAACTTGCTGGGAGCTGTTTATCGACACGGCAATCTTTCCTTCTCTAAAGATGGAAACTCGGTCATCAGTCCTGTTGGAAATCGAGTCTCTGTTTTTGACCTAAAAAACAATAAGTCTGAGACTCTGCCAGTGAGCACCAACAAGAACATTACCTCCGTCGGTCTCTCACCTGATGGGAATCTGGCCATTCTTGTGGATGAAGATGGAGCGGCGGTACTGGTTAGCTTGGTGACTCGAGCTGTGCTTTACCATCATCACTTCCACAAACCTGTTCACAGCGTCTCCTTTTCTCCTGATGGAAGgaAGTTTGTGGTGACGAAGGAGAATGTGGTTCTGATGTACCACGCCCCAGGAAAGAACCGAGAGTTCAACGCATTCGTTCTGGATAAGAGTTACTACGGACCGTACGATGAGACAACCTGCATTGACTGGACCGACGATTCCAAGTGTTTTGCGGTGGGCAGTAAAGACATGAGCACATGGATATTTGGAGCAGAACGATGGGCTAATCTGATCTATTACTCTCTGGGGGGCCACAGAGATATCATCGTGGGCTGCTTTTTTGAGAAGGACAGTCTAGATCTGTACACAGTGAGTCAGGATggcactctgtgtgtgtgggagagcgACGCAGAGCTGGAAGATTTACGCAAAGGCTCCAGATACCTGGAACGGAAGAagatggaggaggagaggaagagacgGGCGGAGGAAGAGGCTCATGATGATAATGAAGAAGACTGTGACGTTGTGGAGCTGGGAGAAGATGGGGAGCCGAGGGGTGAGGTGATTAAAGGTAGTGCGGACTCACCTCAAGAAGTGGAGGGGATCAAAAATGTCCGCTTCAAGCAGAAAAGCAAACACTTTTTCAGCACTGAGGGTATCTGTGGTAACCTGACAGCAGCCGCTTTCCACAAGGACATGCACATCCTGGTGACGGGCTTCGCTTCTGGAGCCTTCCACCTGCATGAGCTGCCTGAATTTAacctcattcactctctcagTATATCTGATCAGAGGATTTCAGCCATTGTTATGAACCcaacaggagactggattggcTTTGGATGTTCAGGTCTTGGGCAGCTGCTGGTTTGGGAGTGGCAGAGTGAGTCGTATGTGTTTAAGCAGCAGGGCCATTTCAACAACATGGCCTCTCTGGCCTATTCTCCTGACGGACAGTACCTGGCCACTGGAGGGGATGATGGGaaggtaaAAGTGTGGAACACCACCAGTGGCCTGTGCTTTGTTACATTCACAGAGCACACGAGCAGCGTCACCAACGTCACGTTCACCAATAGCGGTTTTGTGGTGGTCAGCGCCTCTATGGACGGCACTGTCCGAGCCTTTGATCTGCACAGATATCGTAACTTCCGGACGATGACGTCTCCACGGCCGACGCAGTTCTCCTCCCTGGCAGTGGACGTGAGTGGAGAGCTGGTGTGTGCTGGAGCTCAGGACTCCTTCGAGATCTTCCTCTGGTCCATGCAGACGGGACGGCTGCTGGAGGTGTTGAGTGGTCATGAGGGTCCGGTGAGTTGCCTGTGCTTCAGTCCGGTGCAGTCTGTGCTGGCCAGTGCATCGTGGGATAAAACGGTCCGACTGTGGGAAATGCTGGACAGCTGGCAGACTCGAGAGATCCTGCGCCTCACCTCTGATGGTCTGACAGTGACGTATCGTCCGGATGGTCAGGAGCTGGCAGTGGCTACTCTGGATGGAGAAATCACGTTCTGGAACCCTCAGGAGGCAACACAGACCGGCTCCATCATCGGTCGCCATGACCTTCAGATGGGTCGCAAAGAGACCGATAAAATCACGGCCAAACAGTCAGCCAAGGGCAAGGCCTTCACTTCTCTGTGTTATTCTGCTGACGGCGAGTCACTGTTAGCTGGTGGTCGTTCAAAGTTTGTCTGCATTTACAACATCAAGGAGCAGATCCTCATGAAGAAGTTTGAGATCTCCTGCAATATGTCGCTGGATGCTATGGAGGAATTCCTAGACAGACGTAAGATGACAGAGTTTGGTAGTCTGGCGTTAGTGGACGAGGGAGcaggagatggagatggagttCATCTTACCCTGCCTGGAGTTAAAAGAGgtGACATGAGTTCACGTCACTTCAAGCCAGAGATCCGTGTCACATCCCTCCGCTTCTCGCCCACTGGACGCAGCTGGGCAGCAGCTTCTACTGAAGGTTTACTCATCTATTCCCTGGATGCCTCATTGGTGTTTGACCCCTATGATCTGGACATGGACATTACGCCCACCAGCATACGCCGTCAGCTGAAGAAGAAGGAGTGGGCTTCGGCCATCGTCCTCGCTTTCCGTCTGAACGAAACCTCTCTGATCAGTGAAGTGCTGGAAGCAGTACCTTATGACCAAGtggcTGTGGTGTCCAGCTCCCTGCCAGATGTGTACGTGGAGAAGCTGCTAAACTTTGTGGCCTCGTCTCTAGAGAAGTCCAGGCACCTGCAGTTCTACCTCACCTGGGCCCAAAACCTTCTCACCTTACACGGGCAGAAACTCAAGAGCAGGTCAACAACAATGCTACCGACCATACAGCAGCTGTTGAAGAGCCTCCAGAAACACCATGACGACCTGTCCAAACTATGTGATTGGAACATCTACACTATTCGCTACGCCAAGGCCCTTTCCAAACAGAGAGGTATGAAGAGGACAGTGGAGGATTCACTCAGTGAAGAAGGGGATGGGTCAGAGATCATGGGCTcagaggatgaggaggaagaggaagaagaggataTGATGAGCGAGCCGATCCTTTTGGCCTGACCTTATTAGAGGGGTGTTGGAAAACAGCTTTGTTGGACTGAACTGATGAAGATTGCTGTTGTTGTGGTCTTACAATTGGCCACTGGAACCCACTTGTTATCGATTATATTTTGTTATCGATGCACCCATTAAGATTTTTGTACTGTATGCTATCTAAGAGATGTTTGtgttaaaaagtcattaaaatgtttaaactttttttttttataaacaata

Function

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0055123 digestive system development biological_process

KEGG:

id description
K14558 PWP2, UTP1; periodic tryptophan protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141106 lncRNA upstream 1488 18188710 ~ 18191210 (+) True G104446
TU141107 lncRNA upstream 1488 18188710 ~ 18191210 (+) False G104446
TU141109 lncRNA upstream 1488 18188710 ~ 18191210 (+) False G104446
TU141111 lncRNA upstream 1488 18188710 ~ 18191210 (+) False G104446
TU141113 lncRNA upstream 21940 18170546 ~ 18170758 (+) True G104448
TU141147 lncRNA downstream 224 18215096 ~ 18215471 (+) True G104474
TU141155 lncRNA downstream 734 18215606 ~ 18216090 (+) True G104478
TU141160 lncRNA downstream 30763 18245635 ~ 18246339 (+) True G104482
TU141161 lncRNA downstream 42725 18257597 ~ 18269488 (+) True G104483
TU141162 lncRNA downstream 42725 18257597 ~ 18279808 (+) False G104483
XM_022674810.1 mRNA upstream 110236 18009302 ~ 18082462 (+) False LOC103032361
XM_022674809.1 mRNA upstream 110236 18029655 ~ 18082462 (+) True LOC103032361
XM_022674812.1 mRNA upstream 115119 18009302 ~ 18077579 (+) False LOC103032361
XM_022674811.1 mRNA upstream 115119 18029655 ~ 18077579 (+) False LOC103032361
XM_007228686.3 mRNA upstream 186187 17998315 ~ 18006511 (+) True gemin8
XM_022674388.1 mRNA downstream 121273 18336145 ~ 18337262 (+) True LOC111193482
XM_022674818.1 mRNA downstream 189634 18404506 ~ 18566714 (+) False arhgap6
XM_022674817.1 mRNA downstream 189635 18404507 ~ 18566714 (+) True arhgap6
XM_022674819.1 mRNA downstream 264207 18479079 ~ 18566714 (+) False arhgap6
XM_007254802.3 mRNA downstream 427836 18642708 ~ 18742642 (+) False mid1
TU140760 other upstream 1065388 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1298975 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1684921 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1734489 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3500499 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 704188 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 2774401 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2804166 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3112320 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4595207 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile