RNA id: XM_022674817.1


Basic Information

Item Value
RNA id XM_022674817.1
length 3416
RNA type mRNA
GC content 0.59
exon number 13
gene id arhgap6
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18404506 ~ 18566714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACCTGGCGGAGCTCAAGTTCACTTCAGTCGGTCAGGCTGTCTGAGCTCCGCGCGGCTGAGTTTTCCTCCAGGCTCCGGTTTGTTTTTGTATCGTTTCTGGGGTGAAGTGAGGAGTGTAGAGGGGGATTATGGAGGGAGGGGAGGCGGCTCAGGGCGAGTGAGTTTCCCAACTCTCCTCTCTATTTATCTCCTCCagcctctcctcctcctttttcctctcctcctcctcctcctcatccctctctccgctcctctcctctcctcctcctcactcaGAGCCGAGCGGCGGAGCGGTGGAGCTGGAGGCGCAGCGAAGCGATGTGAACACCACAGCCGGGCGCCCTGCCTCTTCCCCGGCGGAGAAACCCTGAGGAGTTACCGGCACTTTTTCCCACGTTCTGACGGACCGACTCCCCGCCGCGTTTCTCAGTCATCATGTCCTCCTCACACGGACTCCTCAACACCGTcttctcctcctgctcctctccCGTCTCCAAGGGCCTCTCCAAACGGCGCCTGCGGGCCACCAGGAGCCTGGACCCGGCTATCATCCGGCACTACGGCTCGGAGGAGGCTCCCACCCCGGACCCGGAGGGGTTCAGAGCCTGCGGGCGCTCCGTCCTCCCCCCGCCCTCACCCTCCAGCCCGTCCACCCCCGTGGAGACCACCTCCTCCACGTGGTCCCACTTCCAGTTTGAGGAGGACTGGAGGGGCGTGAGGAGGAGCGCAGGCTGGGAAGGGCCACTGGTGGCCCGGAGCCCCAGTGTCAGCCCCACCGGACACTTCTTCTCCCCCAGAAAGTGGCTCCAGAAGAAGGTGCAGCAGGCCACCTGCCACGCTTACGTCGTGTGGAAATCTGAGGGTGACTTCACCTGGAATAGCCTGTCTGGGAGGAGCGTGAGGCTCAAGCCAGTAGCCATCCAGAGCCTGTCAGAACTGGAGAGAGTGAGGCTGCAGGAAGTGGCCTACAACCGGCTACACCAAGACTATGACCTGGGTTGCCAGATCACCATCCCCAAAGATGGCCAGAAGAGGAAGAAGTCACTGCGGAGGAAGCTGGACTCCTTAgccaaagaaaagaacaaagacAAAGAGAACACACCACAGGCCTTCGCCATCTCCCTGTCGCAGGTGATCGCCAACGACCGAACACACAGGCAGCGTCAGGAGGGTCAGCGGCTGGACCCCGTCTCCCGGGAGGAGCACAAAGACTCCAGTGACCTGGTCTCCTCCATCCTGCAGTTTGCCACCAAGCGAGCCACCAAGGAGCTCTCCAGCAGCAACTCCTCCCTCAGCTCCACTTCAGAGACAGCTAATGAGTCCACCTCACCCAACACGCCTGAAGCAGCACCCCGCGCACGCAGGAGGGGGGGCATGTCGGTGGACTCCATCACCGACCTGGACGATAATCAGTCTCGTCTGCTGGAGGCGCTGCAGCTGTCCCTGCCGGCCGAGACTCCCAGCAAGAAGGAGAAGCACCGGGACAAGAGGCTGAGTCTGAACCCCATCTACAGGCAGGTTCCTCGCGTGGTGGACAGCTGCTGCCAGCACCTAGAGAAGTACGGTCTGCAGACAGTAGGCATCTTCAGGGTGGGCAGCTCGAAGAAAAGAGTGAGGCAGCTGCGTGAGGAGTTTGACAGGGGTGTGGACGTGCAGCTGGATGAGGAGCACAGCGTTCATGACGTGGCTGCGTTGCTGAAGGAATTCCTGAGGGACATGCCTGACCCGCTCCTCACCAAGGAGCTCTACACTGCCTTCATCAACACCATGTTGATGGAACCTGAAGACCAGCAGATTGCAACCCAGCTACTAGTGTATCTGCTACCACCCTGCAACAGTGACACCCTCCACCGGCTGCTAGAGTTCCTGAACACCGTGGCCCAGCATGCTCACGATGCAATTGACAAAGATGGTCATGAGGTGACGGGCAACAAGATGACGTCAATAAACCTGGCCACTATCTTCGGGCCAAACCTGCTGCACAAACAGAAGAGCTCAGATAAAGAGTTCAGCGTGCAAAGCTCCGCTCGCGCCGAGGAATCTACTGCCGTCATCGCTGTGGTGCAGAGGATGATCGCCACGTTCGAGGATCTCTTCATGGTGTCTCCTGATCTGCAAAATGAGGTGCTAATGAGTTTGCTGGAGACGGATCCAGATGTGGTGGACTACCTGCTACGACGAAAAGCATCACAGAGTCCAGATTTGTTGAATTCTGAGACCAGCTTCTCTCTAAGTGAACGAAGATCATCCAGCGATTCTAACAAGGTGTCAAGTGGCGAAGTCTCTCCCTACGACAATAACTCTCCTGTGATGTCTGAGAGGAGGGGCGGTGATGGAGGCAGCACTGGCACCGTTCCTGGAGGAGCTCTCAGCACTGAGCGGCTCTTCCGCGTCCCAGAACAGTACACTCTGGTGGGACAAGTCACGGGTCGAACCAGGGACACTGTCTCAAGCCCCTGGTCCCCTTCAAAGGACATTTCTGAGGAACATGCCAACATCTGGGGTGCGTGGCACACAACACTGAAGCCAGGGCTGAAAGAACAAAACTATACAGGTTCCTACACCAACATGTCGGAGGGAAGCTCCCGCAGCTCACAGGAGGGAATCGACAGCCACCGCAGCAGTGACCCAAAGCAGCTTGTGCGGACACAGCCCTCGCTGGGGGTGACGGACTGTCGGCAGCACCCTGCGGCAACTCGCGTCGGCAGCAGCCCTCATTCTGGGCAGCGACAACTTTGCCTTAATCTCAACCCCGACGGCCAATCGGCGTCCAGCAGCTCGGAGGACCTTCCGGTCGGGAGCAGTCACAGCACGCCCAGCCCCACGGTGTTCCCTAAACCAGCAAACAGGAACGACGCACGCCCCCCTCCACCCCCATACGGACTCTCGAGACCGGCCACGTCAACGGTTTCCTCCATCTCCCCCACGTCTCTCGCCCCGGTGTCCTCAGCTCAGCAGTGCCCCCAGCAAGGGACCGGGAAAACCGTCGCTCAGAACTCGTCCTCCTCGCCAGGGGGCGCTCTGACTCCCCTGAGCCCCGAGTGGCAGGACTGGCAAAGAGACAGGTGGCAAATCTGGCAGCTCCTGTCTTCGGACAATGCGGACACACTGCCCGAGACGCTGGTCTGAGGAGCACTTGGTCTTACGGATCCCGGAAGCAACTGAGAGGCAACTGGGATTGACCAGAGCAGTGGATTCATTCAAGATGGCCGCTGTCTTACGCCTGCGGATGGCACACAAGTTTGTGGCCGAGGTCCTTGTCGCACTGCGTTTCCTGCGTTTCCTGCGGTTCCGGTCGTTGCTTGGTTTTCTCAGactatgaaaacaaaaaaaaaacagacgcagACGTCACCCAGCTGCTCCTACGGAGGAATATTATTTTCCAGGCAGCcaaaacaaaaatctgaaaagtca

Function

GO: NA

KEGG:

id description
K20631 ARHGAP6; Rho GTPase-activating protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141192 lncRNA upstream 10441 18384875 ~ 18394066 (+) True G104502
TU141162 lncRNA upstream 124699 18257597 ~ 18279808 (+) False G104483
TU141161 lncRNA upstream 135019 18257597 ~ 18269488 (+) True G104483
TU141160 lncRNA upstream 158168 18245635 ~ 18246339 (+) True G104482
TU141155 lncRNA upstream 188417 18215606 ~ 18216090 (+) True G104478
TU141195 lncRNA downstream 2737 18569451 ~ 18573387 (+) False G104504
TU141196 lncRNA downstream 2737 18569451 ~ 18573534 (+) True G104504
TU141286 lncRNA downstream 81501 18648215 ~ 18649075 (+) True G104588
TU141371 lncRNA downstream 363321 18930035 ~ 18930393 (+) True G104658
TU141374 lncRNA downstream 374384 18941098 ~ 18956053 (+) True G104660
XM_022674388.1 mRNA upstream 67245 18336145 ~ 18337262 (+) True LOC111193482
XM_022674813.1 mRNA upstream 189635 18192698 ~ 18214872 (+) True LOC103032036
XM_022674809.1 mRNA upstream 322045 18029655 ~ 18082462 (+) True LOC103032361
XM_022674812.1 mRNA upstream 326928 18009302 ~ 18077579 (+) False LOC103032361
XM_007254802.3 mRNA downstream 75994 18642708 ~ 18742642 (+) False mid1
XM_007254800.3 mRNA downstream 115623 18682337 ~ 18742642 (+) True mid1
XM_007254801.3 mRNA downstream 139393 18706107 ~ 18742642 (+) False mid1
XM_007254803.3 mRNA downstream 222809 18789523 ~ 18808162 (+) True LOC103031642
XM_022674823.1 mRNA downstream 260565 18827279 ~ 18858363 (+) False LOC103031957
TU140760 other upstream 1277197 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1510784 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1896730 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1946298 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3712308 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 352346 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 2422559 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2452324 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2760478 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4243365 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile