RNA id: XM_022674828.1


Basic Information

Item Value
RNA id XM_022674828.1
length 3987
RNA type mRNA
GC content 0.43
exon number 20
gene id LOC103024880
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19033405 ~ 19050916 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAAAAGTGAAATCTTAGAGACTCATACTGGAAAAGGAAAAGGGGTATACTGGATCAACTGCCGTCCGTACCTTTGGCCCAAAGAAAAATGGGAAGTGGCTAAGGTTTATATGCCACGTGGACATACAGATCATTGCAGTTTTGAGCAGTTTGATATATCGGCAATTTTGAACTTCATGGGTAGCTGCACACATTTCGAACCCTTTGTTCAAAGCAAGGATCTGAACaagGTCACCAACATGAGGAATATCGTGATGCATTCCCCCGAATTCAGGCTTGATGAGGAAAAGATGAAAAATGTTGTCGAAAATGTTTTGAGTCTGGCTACGCTTCTCAATTCTCATGTACCAGGAGATCTATACAAGACTGTTCTTGAGGCTATAGAGAAGTTTAATACAGTGTTGGAAAATTGTCTGGGGCAAGATTCGAAATTAGATGGCAATGAAAATATATTGCTGCTGGACAGAGAACAGCAAGCCCTGAAAGAGAAGATTGAGTCCCTAACTCAGCGATATGAAGCGGACCAAAATGAAGGAAATACAGAAGAACTGCAGGGTATGAGAAACTTCCTGGAGCAAAACAAAGATCTCCTGGAGAACTTGAAGCCACAGGTGGAGCGACTAAATGAGATACAGGAGAAAGTGGATGAGCATGAGGTTAAGATTGTTCACCTGAGCGGCAGGGTTGATGATCTGGAGAAGGCAACAACAACCGATTCAATGTTCACTATTGAAACACTCCAGTACAAGAATCATCTGATTGAACAGACCCGAAAAAGGAAATGGCCGGACCCGGTTTTCACAGAGGAAATTGAACCCAGTGgttataGAGGTCGAGTGGAGGTAAATGGGCACACTTTTATAGGCTTCCaggtgtgcaaaaaaaaagttatggcTCATCAGGAGGTCGCCAAGATAGCTCTGGATTCCCTCAGATCTGAGTTTGAGAGCACAGTGGAGCCACTATCATCTGCAACCACAACCTCCAGCAATCCCTTTCATTGCACTGTGACGGTTGTTCTTGACAAAGTCGTCGTTTCTGATGGGGCTGTAAAACAGGAAGAAGCCATTGAATCTGCATACAGCAAACTAGTCCCACTGTTAAAAAACCTGAAGGACCTTCCTGATGGTAATAGGACAGCAGTTTTGGCGCATCTTAATAAATGTGGTGTCAAGCCACCACAGGAACTCCTATTGCAAAAGGGTGATCAATTCTTTTGTGAACTTCAGCTTAAGGAGAGCTTTACCTTTAATGATGAAGATGGTTCCAGcaccaagaaaaaaacagagcagcagGCAGCGAGCATCGCCCTGCAGCGGCTGTCAACATTCCTTAACAGCAGTTCTTTGGCTGTGCGGAATGAGAACTACAAAGGCTTTCTTAAGGAACGTCTGGATGCTCTTGGTATGGACAGTACCAAAACTGTGTACACAATTGATGaagaaaaagcaacagaagATCCAGAGGGACCAGGCACCAGCATAGATGCATCACAGAGTTATAGAGATGAGTCAAATGAACACAATACTGAGGACTTACAGGTGTGTTCCACCCAAACGAACACTCACCAGGAGGTTGCCAAGATACCCATGGACTTAGAGCGTACCAAAGGACCATTAACACCTGCGTCCATTTCATCAGTGAACACCACTACATCATCCTCAAGCATGCTTTTTTATGGCACCGTAATTGTGGTCCTTGAGAAAGAGATTAGTTCTGATAGTTTTTTAACAAAGGAAGAAGCCATTGAATCAGCTTACAAGAAATTTACCTGTGTGTTTGGCCTGAATTATCCTAATGGAGattctTCTTTTAAGACAGCAGTCTGTGCACATTTTGAGAAGTGTCAGATCAAGCCACCACAGGAACTTTCATGTTCACAGGATGATAAATTTGTCTGCAAACTCCAACTGTCTGAGTGCTTTCCCTTTCATGACGAAGTTGGCTTCTCCAACAAGAAAAAAGCTGAACAGCAGGCGGCTAAACTTGCTCTACAGCAGCTGTCACCATTCCTTACCTGCAGTCCTTTGGCGGCCCAGAATGAAAACTACAAAGGTTTTCTGAAGGAACGTCTAGAGGCTTGTGGTATTGACAGTACCAAAACTGAgtacaaaactgaacaaaaggCCATGGAAGAACTAGAGGGTCCAGGCACCATGAGGGATACATCACACAACTCTGCAGTGTCCAGCACACAGACAAGACAGAATGAACTAGAACTTTCTAGCGTTCAGCCAAACGACAATGGTGCTGTCGTCCATCCTCCGCCCACTTCTCATTCAAGCTGTGCTGCTAAAATTCCTGACTCTAGTCCTTCCTCAGTACCAAATGAAGTGCTAGAGGAGGATTATGCAGAGATCCACTCACTTCTGACTGTGCATCATCTCAAGCCTCCATCTGTAATAGTAGAACGTTTTACGACTGATCAAAATGTCAGCCTTACACTGAACATCGCCTTGGACAAATTCACTTTTAAGAACCTCAGTGAATACACTTCAAAGAAAGAAGCTACTCGGAAGACCTATTGTTTACTTGGGTTTGCCTTGGGAATTTTCCCAAAGGACACAGATGAAAACAAGGCAACCATGTTGGTGAAACAGGATTTTTCCAAGAAGACTTTAGCTCTTCCCAAAGAAATAGTTGATGGCGAGAAGACGTCATTTTGGTGTTCGATTGGAGAGATAACATACACTTTAACCTATGAGGGGCAAGGCTCCACAGAAGACGAGGCAAAGCAGGACACTCTGAATAAAGCCCTGCTCACTCTTCCCTCGCTCTTTGGCTTCCCTCATTTGCCCAAGTCCAGCAGCACAGGAGAAACTGAAGATCAGATTAACAGCTTGCTGAGAAAAGCTGGTCAGAAAGACCTCACTTTCTCCGACGAACGTAATCAACATAAAGTCTCTGTCACCCTTGCGTTCAGTGACTACACCATGACGAGCAAAATGCAACGGACCAAGAAAGAAAATCGCAATCTTCTCAGCAAGCGCATCCTGGGCCTTCTGGGGGTGGAGACAGAACCTCAGTGTCCGTCGTTAAGGAACTGCGTAGATGACTGGTTTAAACAGAAGGGTCTGCAGCAACCTGTATTTACTGATACGGAGGAAGCCCTGGGATGTAAAGCTGTGTTTTCTGTCCAACTTTCCTGTTCTCATCCAGACTGGGAGGATAAGCTGGAGGCTGCCAAGATGAAGCTGGTGCAGGAGCTTCACAGAAGATTCAGGAATTTGGTTGACAGTGGCAAACAGGATTAACATCAGCAACCAAGCAAAAGCATACCAAAAGTGCCAAACACCAAACCTGTGTTTCTTAAATGTGCTTAATTTACTTTTTCAGTAGGTAGTAGTGTGAACAATATGACCATCGTGCACATAAAACACCAATGTAGTCACTCAGCAAGCTGTACTGAAGTGAGACATTGCTTTGGGACTGTAGTTTTAAAACCTGTGCACAAAAAGAGGccttgagcttttttttttaataatagctAATTCTAGTTCTTCTTAATAGTCCAATAATGTCCATATGAAACCATTAAAAAATGCACTTAAGTTATGATATTTATTCTAACTACAGACCAGCATTTTGGTGTAATGGGAGAATGAAAGCAATATACTACAAGAGTTTGCTGCACTTAACGCCAAAATTTAAGTCTTTCTTTacttttgtgcactttttttccACGTGTGGCACTTTAATATAAGGGTAACACCCTAAGCCCCAATTATTACCTACTACACTgcacttttaacattttaggatgttttttacatttgttacaTCTGAAATCCGATCTTTTAACATCTCCTTTTATGTATTACTCTATATGAACTTAAGCACTTAACTCTGTCTTATGATTCTGACCGAAaatgatttgaatgtatttatatgtttgaaAAATTTAACCCTTGACCGGTTTCTAATGACCTATTAAGTTTACTAAATGGGTTTTGTTGAGCTCTGGAGTAAAGCACTTAAACTCCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141400 lncRNA upstream 2094 19031017 ~ 19031311 (+) True G104680
TU141402 lncRNA upstream 2132 19031017 ~ 19031273 (+) False G104680
TU141381 lncRNA upstream 4040 19027152 ~ 19029365 (+) True G104666
TU141384 lncRNA upstream 6819 18998535 ~ 19026586 (+) True G104667
TU141374 lncRNA upstream 77352 18941098 ~ 18956053 (+) True G104660
TU141432 lncRNA downstream 67738 19118654 ~ 19120266 (+) True G104702
TU141436 lncRNA downstream 96788 19147704 ~ 19150962 (+) True G104706
TU141444 lncRNA downstream 154510 19205426 ~ 19205714 (+) True G104712
TU141465 lncRNA downstream 272092 19323008 ~ 19323230 (+) True G104729
TU141550 lncRNA downstream 483118 19534034 ~ 19534314 (+) True G104798
XM_007254808.3 mRNA upstream 10484 19014406 ~ 19022921 (+) True LOC103033226
XM_007254869.3 mRNA upstream 20439 19008566 ~ 19012966 (+) True LOC103024565
XM_015607258.2 mRNA upstream 137874 18860729 ~ 18895531 (+) False sugt1
XM_007254805.3 mRNA upstream 137874 18860730 ~ 18895531 (+) True sugt1
XM_022674821.1 mRNA upstream 175042 18840973 ~ 18858363 (+) False LOC103031957
XM_022674829.1 mRNA downstream 6482 19057398 ~ 19067487 (+) True LOC111193549
XM_022674833.1 mRNA downstream 117967 19168883 ~ 19309236 (+) False LOC103025512
XM_022674832.1 mRNA downstream 196006 19246922 ~ 19309236 (+) True LOC103025512
XM_022674389.1 mRNA downstream 358391 19409307 ~ 19411213 (+) True LOC103035666
XM_022674834.1 mRNA downstream 362104 19413020 ~ 19419379 (+) True LOC103025817
TU141369 other upstream 110202 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 1906095 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2139682 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2525628 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2575196 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1938357 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1968122 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2276276 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3759163 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4864719 23915635 ~ 23923771 (+) True G106017

Expression Profile