RNA id: XM_022674834.1


Basic Information

Item Value
RNA id XM_022674834.1
length 2925
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC103025817
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19413020 ~ 19419379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagaaccctgcgGGATTCCATCAAATGTGCTAAACCAATCGACATTGCCAAATATCAATAATAGGTACAAGTACCTCagtcttttttaatattacagcAGTAGCTGAGATCTGAGGGGGAAAGCCTACTCACTGAGCTGTAACTacacttaaagcagtttaaagcagttactgtATTGTTATGCCgaatatacagtttatattcGCATTGCAGTCCATAATATGACACTACTGTTTTTCACCAACAGGTGTATATATTTCAAGCCCTAGTCGATGGATTTATTACTCACAAAACAGCATTGTAGCTAGAAAACGTAAAGCATGGGTGACTGGAGCTTTCTGGGGAGGCTGTTGGAAAATGCACAGGAACACTCAACGGTCATTGGGAAAGTCTGGTTGACAGTCCTCTTCATCTTCAGGATCCTGGTTTTGGGTGCTGCTGCAGAGGAAGTGTGGGGGGACGAGCAGTCAGACTTTACGTGTAACACGCAGCAGCCTGGTTGTGAGAATGTATGCTATGATGAGGCCTTCCCAATCTCACACATTCGCTTCTGGGTGCTACAGATCATCTTTGTGTCCACACCTACTCTCATTTACCTGGGCCATGTACTTCACATTGTCCGGATGGAGGAAAAACGcaaggagaaagaggaggaacTGCGCAAGGCCAGTAGATTTCAGGAAGAGAAAGATCTCTACAGGAATGGGGGCGCAGGAGGAGCAGGCGATGGAGGCGGTGGCAGTGGCAAAAAAGAGAAGCCTCCAATACGAGATGAGCATGGCAAAATCCGGATCAGAGGTGCTCTCCTGCGCACCTACATTTTCAATATTATTTTCAAAACTCTGTTTGAAGTGGGGTTCATCTTGGGCCAGTATTTCCTTTATGGGTTCCAACTTAGGCCCCTTTACAAATGTGCAAGGTGGCCCTGCCCAAACACAGTGGACTGCTTTATCTCCAGGCCCACAGAAAAgaccatttttattatatttatgctTGTGGTGGCTTGTGTGTCTCTTGTGCTGAACCTTTTAGAAATCTATCATCTGGGATGGAAAAAAGTCAAGCAGGGTGTGACCAACAAGTTTGTGCCAGAGCATGAATCTCTACCCTACAACGCTAATGAACCTGGAAGGGTTGATGATGTCACAATCCTCCCTGTGGTCAGCTCATCTCCACCTGTCTTTAACCAGCCTCCCAACTATGCAGATATGGCCATTTTGGGAAGCAATGCAATCCAGCCCTCAACAACCTTAGCTCTAGTACCCACAGCTGAGGCAGAGTGCAAGGCTGATCCACTTAATGATGTTCCTCAATCCTTCCTATACAACAGCAATTACAACAGCAACAACTACCATCTGACAATGGAGCAAAACTGGGCTAACAAGATGGCTGAGTTACAGAAAAATGAAACGAAGCCCCCAAATTCAAGCCTTACTTCCTCATCGTCCTGCTCCTCCttaagcaaccacttggaaagcAGAGATTCCGTTCGCCCTTCCTCTATCTGCACTGCTGATTTTCTCAGTGATGGGAGAAGTGAACCAGACATTGGGCCTGTTTTTACCACCACCACTGCAGAGATGCATCAACCGCCTGTTACAATGACTGATATTTGTCATTTGAGCAGAGCCAGCAAAATAGGCAGCATCAGGGCTAGACCTGACGACTTGGCAGTCTAGTCGAGCCTATCAGTACATTGAAGATAAAATTCAGGACTTTAATGGGAGGGTGCTGCAACTGTCAAGTCCTGTCTAACAAATCTAGTACCAGCACATGACCCAAGCATCACAAACGGTGCAAAACCCCTCGTGAACACGTTTACGAGCATGATGAAGGAAAAGCAAACTGAccctgtttaaaataaaagaggGAAAGCTTTTAGCTTGTTAATTCTATTTCAGTTTTTGGCAAAGTTTGGCAGAGGTATGCACTTTCATTTTTGTAACACATGTTTGAGCTCCACCATTCTGTGCCTTGGTGTGTCAGTGTCACTACACTTTTACTCGACGTCTGTCCAGCTGTTATGGCCTATATCTGACCCTCTGTAAATCcacaaaagaccaaaaaaaaaaaactaatgaggagCATATTCACTGTGAGATGTCATTAACAGACTCGGATTAGCAAACATGAAGTTGAGCTGAGCCTACAGAATATGCAAGCTAGGGTGCTGTAGCTCTGTCATATAACTGGGAAGTGTGTGCCTGACATGCCAGAGTCATGTTATGATTGTCCTTAAGAATATGCAGTATTTGCTATTATTGCAGTTTCATCAGGGGTAAATAGATATAAATATCATAACTAAACaatatgtgtacatatatacagtatataaatacaatcatatGAATAACTATGAATATAACTGGTTGCAGTGTGATTGCAGCATAGAGGCCTTTCTTGTAAGCAGCAATAATACTCGAGATTTATCCTGTAAATAGAGGCTCATGTGTGAATATAGCTGTGGCAGAGATAATGCTATAGTACTATTGCTAGATAGAGTGAGTAGTTAGAAAAGGTTTGAGGCAAGATTTGAGGCATTGATAGTATTTGTCTTTGTATTTAGGCAATTTGAAGAATATTGTGAAAAGATTTTGAGAATTTCCCTGTAACTATAAATTCCTGccagtttttaaacaaaaatggcTTAATCCACAAAATTATCTTTCTCACTGACCTCCCTTTAGTTTACTTTTccagttattttgtttttacattgaggAGGTGGTTTTACATGGGAAGCAGTTTTAGCCTAAAATGACACCAGTAATATAAGCTGTGACTTAAATGTTAGAGATCagctataaaatatttactattGATATCAGATCTACAGATTAATAATGCTATTCTGATCAGTTACATTGCCAGGACAATATATATGCATATTGTAATTTTGACTAGTTGTATGTTACCATATCAGTT

Function

GO:

id name namespace
GO:0010644 cell communication by electrical coupling biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0003161 cardiac conduction system development biological_process
GO:0055085 transmembrane transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0048050 post-embryonic eye morphogenesis biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005921 gap junction cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG:

id description
K07612 GJA3, CX46; gap junction alpha-3 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141465 lncRNA upstream 89790 19323008 ~ 19323230 (+) True G104729
TU141444 lncRNA upstream 207306 19205426 ~ 19205714 (+) True G104712
TU141436 lncRNA upstream 262058 19147704 ~ 19150962 (+) True G104706
TU141432 lncRNA upstream 292754 19118654 ~ 19120266 (+) True G104702
TU141402 lncRNA upstream 381747 19031017 ~ 19031273 (+) False G104680
TU141550 lncRNA downstream 114655 19534034 ~ 19534314 (+) True G104798
TU141551 lncRNA downstream 115077 19534456 ~ 19536048 (+) True G104799
TU141564 lncRNA downstream 124324 19543703 ~ 19558989 (+) True G104809
TU141571 lncRNA downstream 140654 19560033 ~ 19560591 (+) True G104811
TU141629 lncRNA downstream 270721 19690100 ~ 19690589 (+) True G104841
XM_022674389.1 mRNA upstream 1807 19409307 ~ 19411213 (+) True LOC103035666
XM_022674833.1 mRNA upstream 103784 19168883 ~ 19309236 (+) False LOC103025512
XM_022674832.1 mRNA upstream 103784 19246922 ~ 19309236 (+) True LOC103025512
XM_022674829.1 mRNA upstream 345533 19057398 ~ 19067487 (+) True LOC111193549
XM_022674826.1 mRNA upstream 362104 19033423 ~ 19050916 (+) False LOC103024880
XM_007254820.3 mRNA downstream 6004 19425383 ~ 19457166 (+) False LOC103036301
XM_022674835.1 mRNA downstream 6004 19425383 ~ 19447033 (+) True LOC103036301
XM_007254821.3 mRNA downstream 63247 19482626 ~ 19532872 (+) True LOC103036999
XM_007254874.2 mRNA downstream 143300 19562679 ~ 19576104 (+) True LOC103026133
XM_007254830.3 mRNA downstream 158910 19578289 ~ 19591937 (+) True LOC103040050
TU141369 other upstream 489817 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 2285710 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2519297 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2905243 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2954811 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1569894 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1599659 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 1907813 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3390700 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4496256 23915635 ~ 23923771 (+) True G106017

Expression Profile