RNA id: XM_022674839.1


Basic Information

Item Value
RNA id XM_022674839.1
length 2542
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC103034347
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19594309 ~ 19607808 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatatttgataatagaAGTATAATGAAGTACATTTAATCTGGGGTTTTGTTTGTTGAGACTTTTAGATGCTAGATGATTATTTCAGCTGACTTCAGCCACACCTATTTATTTGAAATCCAAAGACATACCTGAAAACCCCAACCTTATAACCTTGGAAATTCCAATGCAGAACGTTCAGTTTCAGATTCAGTGTTGCACTTTTGGCACTGCCTCCGACTGCGAGTGCTTATATATGGCCATACATTGAGTGTACTTTCAGTTCAGTTGTATCAGGTTGCTGAAGGCAGAGTGGTaggtaaaataattttacagtcTTATAATGCTAAGCTAATATAATACACACAGATGCTGTTGCACAGTTTTAAAGCTACTCAAATGTGCTTGTTCCATATAGAATTTTTACTGTGTGCAATGGAGAAAGAAAAGCAGGGCAGTTCTGAAGATGTTTCTTCTTCTGGTGAAAGCAGTAAACCACTGGAGGGGCTGTTCCACAGCCATTTAGAGGAGAGGGTTCGTCCTTTAATCGACCTGATTGACTCTCTGAGGCAGCTTGGTATTGAAGAAGATTTAGCTCTACCAAGTATAGCAGTGATTGGAGATCAGAGCTCTGGGAAAAGTTCAGTGTTGGAGGCTTTATCTGGAGTGGCCTTACCTCGAGGAAGTGGTATTGTTACCAGATGCCCTCTAGAGCTCAAGCTGAGGAAGCTCAAAGGTGGAGTTCAATGGCGAGCTACCATATCTTACAGAGATGAGTACATTGAGTTTGATGACCCATCCTTGGTTGGAACTTATGTTGAAGAAGCCCAGAATGAACTGGCTGGAGATGGAGTTGGAATTTGTGATGATCTCATCACACTGGAGATCATGTCTCCTGAAGTGTGTGATCTTACACTGATCGATCTCCCTGGAATCGCCAGAGTTCCTGTGAAAGGTCAGCCTGACGATATTGGAGATCAGATTAAAAGTCTCATACGAAATTTTATTGAGAAAGACCAAACCATCAATTTAGTGGTGGTCCCATGCAACGTGGACATTGCAACCACAGAGGCACTCAGAATGGCACAAGAAGTGGACCCTGAGGGAAAAAGAActctggCCATTCTAACTAAGCCAGACCTTGTTGACAAAGGAACAGAGAAAAACGTACTGGATATAGTCAAAAATCAGGTTATCCCTTTAAGTAAGGGATACATCATTGTTAAATGCCGTGGCCAGAAGCAAATTGATGATAAGGTCTCTCTGGCGGAGGCTACTCGAGTGGAGAAAGAATTCTTCAAACGTCATGAATACTTCAGATGCCTTTTGAATGAAGAGAAAGCAACAATTCAGTGTCTCGCCACCAAACTGACTCAAGACCTGGTCGACCACATCaaaAAATCACTGCCTCTGCTTTCAGAGCAGATAAAGAAGCAGCTGTGGGACTGTAGAAAGGAGATGGGTCAGTGTGAACCTGGCCCACCACTGGATCCACAAAAGAGGAAAGACTTCTTAATTACAATCATGATGAAATTTAATGACAAGATTAACCGCCTGTCGACTGGAGACGCAGGTAATAATGACAACTTGTTTGTTGAGCTCCGGTCAGAGTTCAGAAAGTGGAAGGAACATCTTGACAGCACAAAAACCTCATTTCACGAGACGGTCCAGACAATAATGAAAGAATACGACCAGAAATACAGAGGAAGAGAGCTGCCTGGCTTCAGCGattataatgtgtttgagaCGGTGGTGCAGATACTTGTGGTCAAACTGAAGGGACCGGCTATTGAGACACTCAGGATCATCAAAGAAACAATCCAGAAACAGTTCTCAGAGGCATCCAGAGCCTGCTTTAACAACTACCCTTTCCTCCAGTGTGTTGCAACGaacaaaatagaaaacattCAGTCAAAGCAAGAAGCCAAAGTGGAGCAGAGGATCCTGGAGCAATTTGAGATGGAGGAACTGGTCTACACTCAGGATGGAATCTActttaaaacaatgaatgaaacaCAGCTTGTTATGGATGGGCAGAAAGCTTCAGAGGATAATTGTGCTAACCTTGACAGCAGAAGCAATTACCCTGATATGCTGAAAGCCTATTATGAGATCGTAGTGCAGCGATTGGCCGACCAGGTGCCCATGCTAATCCGATACTTCATGCTGAAGGAATCAACTCATCTGCTCTGCAAATAGATGCTGGGGTTGCTGGATGGAGCCAATGTTGTTGAGGCTCTGCGGGAGGAGTCAGAAGTCAGCAGACGTCGTATCACCACTCAGAACCGCGTGGACCGTCTCACCATCGCTCAAGAGAAGCTCAGCAACTTTGTTTAAAGAAGAGATTTGATCCGAGTTAGCACTTTAGGTGCACCAATGTTTATTACAGTACATTTGTATGTCAGAAAAGTACTGtgcttatttttatatatatatatatattaacatataatacaaacacacatgatAGTTGTTTTAACACACAATATTCTGTCTGAGGATTTATTCTAATAAACGATTCTAttgtaattttataataattcatgccactaaaataatgataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141571 lncRNA upstream 33718 19560033 ~ 19560591 (+) True G104811
TU141564 lncRNA upstream 35320 19543703 ~ 19558989 (+) True G104809
TU141551 lncRNA upstream 58261 19534456 ~ 19536048 (+) True G104799
TU141550 lncRNA upstream 59995 19534034 ~ 19534314 (+) True G104798
TU141465 lncRNA upstream 271079 19323008 ~ 19323230 (+) True G104729
TU141629 lncRNA downstream 82292 19690100 ~ 19690589 (+) True G104841
TU141689 lncRNA downstream 98838 19706646 ~ 19710814 (+) False G104891
TU141690 lncRNA downstream 98838 19706646 ~ 19709052 (+) True G104891
TU141693 lncRNA downstream 135706 19743514 ~ 19744913 (+) False nfkbiz
XR_002650596.1 lncRNA downstream 174321 19782129 ~ 19782686 (+) True LOC111193552
XM_007254830.3 mRNA upstream 2372 19578289 ~ 19591937 (+) True LOC103040050
XM_007254874.2 mRNA upstream 18205 19562679 ~ 19576104 (+) True LOC103026133
XM_007254821.3 mRNA upstream 61437 19482626 ~ 19532872 (+) True LOC103036999
XM_007254820.3 mRNA upstream 137143 19425383 ~ 19457166 (+) False LOC103036301
XM_022674835.1 mRNA upstream 147276 19425383 ~ 19447033 (+) True LOC103036301
XM_022674838.1 mRNA downstream 15620 19623428 ~ 19648111 (+) True LOC103026741
XM_022674837.1 mRNA downstream 52197 19660005 ~ 19684150 (+) False LOC103039332
XM_022674836.1 mRNA downstream 52295 19660103 ~ 19684150 (+) True LOC103039332
XM_007254827.3 mRNA downstream 81152 19688960 ~ 19703422 (+) True LOC103039009
XM_007254825.3 mRNA downstream 105768 19713576 ~ 19727108 (+) True cep97
TU141369 other upstream 671106 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 2466999 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2700586 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 3086532 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 3136100 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1381465 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1411230 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 1719384 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3202271 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4307827 23915635 ~ 23923771 (+) True G106017

Expression Profile