RNA id: XM_022674859.1


Basic Information

Item Value
RNA id XM_022674859.1
length 7663
RNA type mRNA
GC content 0.47
exon number 53
gene id cenpe
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20532402 ~ 20564585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATGTAACAGTCAGTAGGAGTCGTTAGGACGACGGGGATCgggtggttgtgtgtgtttctgtatttttgtgaCGGGTATGAGGAGAAATGGGCGAGGAGTCCGCAGTTAAAGTGTGTGTTAGGGTTCGACCCCTTATAAAACGggAGGAAGAGGCAGCAGCTGCTGAGAATGCAGAGTCTGTAAAGTTGTACTGGAAAGCTGACAGACAAGCCATACACCAGATTGATGATGATGGCAACCTCACTAAAGGTTTTGCTTTTGaCCGGGTTTTTAGTGCAGAGGAGACCACCAATCAACTGTATCAAGACATAGCCAAACCACTAGTCGTGTCGACTGTGGAAGGATACAATGGCACCATATTCACCTATGGACAGACTTCCTCTGGAAAGACCTTTACGATGATGGGCAGTGACCACATCCCTGGCGTTATACCCCTTGCCATGGCAGATGTGTTTCAAACAATCAAAAATTGTCCAAAGAAAGAGTTTCTGCTGCGTGTGAGTTATATGGAAATTTATAACGAAACCGTAACAGACCTACTCTGCGACAGCTGGAagagaaaacctctggaaatcCGAGAAGGAAATTACAAAAACGTCTATGTGGCAGACTTGACAGAGGAGCTAGTAACATCTCCAGAGCAAGCCCTGGCTTGGATTCGTAAAGGAGAAAaaAACCGACATTATGGAAAGACAAAAATGAACCAGCGGAGCAGTCGCTCCCACACGATTTTCCGAATGatcttggagagcagagagaggagtGACCCAGCATCTGGTGAAAATGCAGATGGAGCCATTATTGTTTCACATTTGaACTTGGTGGATCTGGCTGGTTCTGAACGAGCAAGTCAGACAGGAGCTGAAGGGGCTCGTTTTAAGGAAGGATGTAATATCAATCGCAGTCTGTTTATCCTGGGACAAGTCATCAAGAAACTCTCTGATGAGAGCCAGAAGGGCTTCATAAATTACAGAGACAGCAAGCTAACACGTATCCTCCAAAATTCGCTGGGGGGCAACGCCAAAACAGTTATCATCTGCACAATAACTCCGGTCACTGTGGATGAAACCCTGAGTACTTTACAGTTTGCTAGCGCAGCAAAGCGTATGAAAAACGACCCCCACGTTACAGAAGTCTCGGATGATGGTGCTCTTTTGAGAAGATATCGTAATGAGATTGTGGATCTCAAGCGCCGTCTTCAGGAGGTTTCATCCGTCACCAAAACGACTGTGACCGAGAAGGAAACGCTTTGCCAACTTCTACAAGAGAAGGATCAACTTCAGCGCGAGCAGGCTGATAGAATAAGGAACCTAACCAAGTTGTTGGTTACAGCTTCAAATGTGGTACAGGTCCAAAAGGTTCCCAAGAGAAGAATGACGTGGGGTGGGAAGCTCCTGAGATCTGCCCAGTTAGTTGCAGAAGATGAGGGATCTGCAGATATGAGCTATGCTGAGCCCTTTTTCAAAAAGAGGAGAGCAGACCTAACTATATCTGAGGAAGGAGaagACATGGATGACTTTTACAATGCCAATGAAGATTCCTGTCTTGATATTGAGATGAACCAAAGCAACATCACTATGCGTAGTTATGCATATGGcATGTCCCCTGACTCACCTCAGCTGATGAATAAAGTGGAGTCTTTGGAGCGTCAGTTGGAGACGGAGACTCAGGGGAAACAACAGGCTGAAGAAAAGAGTTTGGCTCTGGAACAGAAGATGGAGGATCTTGAGAAACAACTACAGATGCTGGAACAGAAGTTAGAAGTGGAAGTACAGGAGAAACAGAAGTCAGAGGAGAAGTGTTCTGAGCTGAGTCTGAAGGTTGCAGAACTGGAAAAGCCTTCAGAACAGGAGAAGACCAGTAATACTTGTGAGAATTGCAAGtaCTTTGGAGAAACCCTCCAGTTGTGTGAGACTCTGAACTTTGAGAGGgAATCAATATCTACAGAGCGTGACCTGCTAAAGCAAACCCTCGAGTTGCTTACTGAGGATATTGAACGACTCAAACAAGAAAACGAGGCCCTTTGCAAAGACAAAGAGGCGCTGATCAAAGATAAAGAAACTCTTTTAAAAGACATTGAAGAGCAGAACGATGCTGATGAGTTTGAAAGGCTGGAGGAAGAGAGCAAAAAAGATTACGAGagaGAGTTGGAAGCTGAGATTTCTACACTGAAACGTGCATCAATGAATGCTGAGGATTTAGTCCAAAAACTTAAGGCTGATTTAGAGGCAATGTCTGTGCAGCTGAAAAAGAAGGATGATGTCGTAGCTGAACTTCAGACTATGAGTGGAAAAGATCTTGTTCAGGAGGTGACACGACTTCGGCGCTCATTAGATGATGCTGAGGGTCTCAGTTTGGAGACCAAAAAAGAGTGGGCTTTCCTGCGCAGTGAAAACCTCTCTCTAAAAGAGCGAGACGTGAGTTTGACTGCAGAATATGAAAGGATGGAAAATCAGGTCAAATCGTTGCAGAACCAACTTGACCACGAGAAATCTCGCTTTAAGAAGATGCAGACTGACCTACAGAAAGAGCTGCTTGGGGCTTTTGACGAGAACACCAAGCTGACTGCCCTGCTGGATGGAAAAGttccaaaaaATGTTTTGGATAGCGTCACATTGGAAAGAACAGTTGCAGACATAAGGAAGGAGCTTGAGAAGAGCCAGGAGAGTGCACAAGCTCTGCAACATCAAGTAGAGGGGATGAAGGCTCTAGAGTTTCTTCCTGCCCAAGTGGAGGATTTGTCAAGACAAGTGTCTGAGCTCAATGGGGAACTCTGCTCTGTGCAGGAGGAGAGAGACAGCCTTGTATCTGCTCAGGCCACAGCCACTGAAGAAATTCAGAGGCTTAAAGAAGAGGCAGAAAAGGCACAGGAGGAAATTGTGAAATTGGGGGCTGTTTTAGCTGATGTAGAGCTTAAGGATGCTGAGCTGAGCCAGCAGAACAAAGAAACCTTGGAGCAGCTTGCTGTGATTCAGGCAGAGAGGGAACACCAATCAAAGGAAAACAGTAGTCTTGTCAGTGCCCTGGAAGAAGCAAGCCAGAAGGCCACACAGTTGTCTGAAGAACTTGAATCTCTTCACGGTGAAAGAGATGGATTTCTGTCTAAGCAAGCTGAAGACATGCAGACTTACCAAAAGGAGCTGGAGAGTCTTCGCTTGGTTATGGACTCAACAACTGAAGAAAGAGACCAGCTCCAGGAGAAGCTCCAGACTCTTAAAGAGGAACGAGACCAACTTAAAATTGACATGGAGGAAAATGTGGAGATGatgattgaaaacCAAGAAGAGCTGAGGACGTCTCTAGAGAAGAGCAAAGCGCAGGAAGACAGGATACTACAGCTGGAAGCTCAGATCGCTGAGTTAGGGTCCAAACTCTCAAATTCAGATGGCAGTGAGAGCAAGCTTATTGAGGAGCTGCAAAATCAGATGAAGCAGTTACAGGAAGAGCTCCAGTctgtaaaagcagagagagataATGTTCTGTCTGAGAAGCCTCTTCACCTAGAAGAGCTGCAGAGGATGCAGACCCACATCACTTCTCTAACAGAAGAGAGAGACCAGCTTCAGGAGATTACGCAGGGGCTGAGAGAGGAGAAGACCCAGCTGAAGAGGGAAAtggaagaaaaagaggagatGATGAAGCAGTTACAGGAGGAGCTCCAGTCTGTAAATGCAGAGAGAGACAATGTTCCGTCTGAGAAGCCTCTTCACCTCGAAGAGCTGCAGAGGATGCAGACCCACATCACTTCTCTAACAGAAGAGAGAGACCAGCTTCAGGAGATTACGCAGGGGCTGAGAGAGGAGAAAGCCCAGCTGAAGAGGGAAATGGAGGAAAAAGAGGAGATGATCATCTGCTTCCAGTTAAACAAAGAGCAGCTCGCTGATTCCGAGAACCAGTTTTCTAATTTATCCTGTAACATGACTGAGGAGAAagagcctcagctccagcagATGGAGGACCTCAAGAAGGAGGCTAAACATCTCACAGAAGAAAATGCACAGCTAAGAAAGGAGCTTCAGGACATTTCTCAGAAGTTGGATGAGCTCACAGCAGCACTCCAAGCTGTGCAAGGCGAGAGGGATTGTTTGCTCACCACTAAGACGACCCTGAGTGAAGAAATGAACAGCCTGAAGGAAGAGATTGAAAAGACCAGAGAGGATCTTCTCAAAATGGAGAGTGAACTAGTAGATTCCCAGCTTAAGGAAGCTCAGCTGAGTGAGCAGCAGACAGAAAACTCTGAAAAGCTTGCGAAGGCCCAGGCAGAGCTGGAGGACTTCTCTGTGGAAAAGAACAGATTGCTTACTTCTCTGGAAGAGGCCAACCTGAAAGCTGTGCAGTTGGGTGAGGCCCTTGAATCTCTTCGTCATGAAAGAGAACAGCTTCTGTCTGAAGAGGTGCAGGAAGCTCCTCATAATCCCGAGGAGCTGCAGATCCTCCGTGAAGCTGTTAAATCAATAACTGAGGAGAGAAGCCAGCTCCAGGAGATTCTTCAGGCTCTCCGTGAAGAGCATAACCAGCTGAAGAGAGACCTGGAAGAGAGCAATGACATGCTTGTGCAAGCCCAGGATCAGCTGAAGCAGAATGAACTTGCCTCAGACAAAGGAGCTACTTGTGTAGAGGATCAGCTACAACAAATGACACAGCTAAGAGAAGACATGCAGTGTGTTACTGCTGAAAAGGACTGTCTTCTGGCAGAAAAGGCTGAAAGCAACTTGACTAACATGGAGCTGGAGAGCCTTCAAGCAAATGTTCTGTCTCTAACTGAAGAGCGGGACCAGCTCCTAGAAGTGCTGCAGGGGCTCCGAGAGGAAAAGAGCAAGCTTAAGGTTGAATTGGAAGAAAAGGATGAAATGATACAAGAGTTGAAGCAGCTTCAGGCTGCTGATAAAGCCCGTTTGTTAATGAAGGATGCCTCATGCAGCATCGTTTCCAATGACTCTGGCTCATCCTTTAATGTGAACGAGGAAGGAGGTCAATTTCAGGAACTGCTGCAAGGAGTACGAGAGcTCATCCAAGTCCAGAGCGAGATAAAACAACAGAAACGACAAGGCTCAGAACAGCTGAGCCCTGGAGATACGCAGGAAGCTCAGCTTCAACAGATGCAGGTCCTCAAAGAGGAAGTGGAGTCTTTGAGGAACGAGAGAACAGTGCTCAGAAAAGATCTTCAGGAAGCAGCCGAAATGtcaaAAACCTACCAGGACCTGCTTCACTCCACCAAAGAGGAGCTGAAACAGCAGCAAAAAGAGAATGCAGAGTTAATGACCCAGAGTACAGAAAAGGAGTCTCAACTCAGACAACAGcTAAACCAGTTGAGTGAAGATCTTCTGTCTCTGCGAGGCCTGAATGACCAACTTCTATCAGAGAAATCCTCTGAGACTCAGGATCTCAACACAGAGCTGCAGAGTCTTCAGACACGCATTACCTCTCttgagaaggagaaagaaacaCTTGATGAAATGCTTAAGGAGAGTGAAGGAAAGAGACAGCAGTTGGCTGAAGAGCTTGAAAGTCTTGGTGGCATCAAAGACCAGCTCCTGAATGAAAAGACGCATGCAGAACAGCTCCTGGAGGTTCTCAATGGGGTCAGAGAGGAGCGCAGCCAGCTCAGTCAGGAGCTGCAGGAGAAAGTGGAGAAGcTGGCACACATTGAGGAGAAAGTACAAGGTCTAGAGAAGCAGAAACTGCAGCTTGAAACTGAAGTCAATACTTTGAGCCAGTCTCTTCAAGAAGCTAATGCTCAGACAGATGTTGCCTCCAAACGAAAAACGCTAATGTTGGTTTCTGAGATGGAGACTTCTAATGAAAAGCTAAAGGCTGCATTCATGAAGCTTCAGCGAGTCATTGATCGTCCAACGCCAGTAGATCCTCTTGCAGATGACATTAGAAACGAATGGCCCTTGTTTCACCAGCTGGTTGCAGTCCTTCCAAAGTCCCAGAGAGCTGTATGTTCTAGTCTTACTTCCAAAACGAATCAGCTTCACAGCGTTCTTGGGAAAACTGGGGTGACCTTAAAGACAATAGCCCAGCGCCACAAGGCTCACTTCATGGCTCAAATCCATCGAGACGTCGCGTCCTTTGAGGAGAGAAGACTGCAAGATGTGCTTATCCGGCAAACTCAAGCTCCCTCACGTTCCGTCCAGATGGTGCAAGAAGATTTGCAGGAGATTTGGGACCAGCGACTTTTGGAGTTGTTGGGAAAACGCAAGCAGTGTCTGCAAGATATGGACAGCATTCTGGAGTTCCTGGAAGATGGTATAGCCAAGCATGCAGTCACTCTCTCTGAGGAACATCAGGCACAGATCAGTGCCCATGAGCAGAGCAGAGCGCTGGCCAGACGTGCGGACGAGGCAGCCGTGGTGCAGTTTTTTGAGCGAGAGCTTGTTCGTCGTACAGCATTGACAGATCGTCAGAAAGCTTTCAATCAACACCTTTTGGACAAATATGATTCTGCTGTGTCTGTCTTGAAGTCCTCGGAGAATAAGTCTCAGCATAGCCTAAAAGAGTTGCAGCGAGAAAACCTGGCACTGCTGCCAGGTCAGAACACTGACCCGCCTAAGACTGTGGCTGACCTACTTCAAGACAAGCAGTGCCTCTTGCTTCAGTTGCAGCAGGCGCAAAAACAAATGGAGGTGATTGAGAAGAGAATGGAGGAGTTAAAGGTTCAGGGAGATTCATCCAACCAAAAACATCTCAACATGCTGCAAGAGCTGAGCTCCAATTTAAAGGAGAAGGTGGAGCTCATCCAGAACCTTCAAGCCAAATTGAAAGAGGCTGAGGCTCTTGCAAAGACAAAGATGACTCCTAGTGCTGCAGAAATGGAGGCCATGAAGGACAAACTGGTGAAGATGGAGCTCAACCACATTGCTGAAACTACTGGTCATGAAAAAGAAATAGCACAGTTAACCTCAGTGTTGGAGCACAGAGAAGAGGTAATCCGCAAGCTGAAAGAGACTCTCAGGAAAAGCCAACAGGAGGAAGAGCATTCATTTATGGAGGGTGAGCAGTCCCATCCCAAAGCTGCCTCCCAACCCAAAGCTGTTGCTTGTCTGAAAGAGAAACAAATTGAGGACCTGGAGAAGAAAAATGCACAATTTGAAAGCCTTGTGACCAAGCAACAAGAAGAAATTTCAAAATGGAAGAGCAGAGCTTACAAGTTGAGGGAAAGTAAGAAAGAAGCTCCTCAGTCTCCGCGCACTCCGACTAAACGTCAGCCTCCACTGCTGGAAACTGAAGTCAACTCCCCCAAGAAACAGTTCATCGACTCTCCCAAAAGCAAGTTCTTCGATGTGCGCTCTGGGGCAGATCCTTTATCCATCAAATGCCCTAAACAGTTCTTCGATAACTCCAGGCTTGGCACCATGCCAGAAATCTCTTGCACACCACCTGATCCAGTTTCAGACTCTTCAGAAAGTGATGATGAGGAAGCCGGGTCCAGCGCAGCAGCCGGCTCCAGTGCAGCAGTCAGCTCGGACAGTTGGTGGAAGCTTCCGAACTCCTCTCCACGGAAAGCAAACACTAATGCAGATGCAAACGGCTGTCCAACACAGTGAtttgtcttgtgtttttgttgGTAATATTAATGTCTGTCCAATGTATGTCCCTTTTTTTTCATGTCTTAAATCTTTTATTGTCGTAAAATAAACTTAAGTCTTTTAAACTTTT

Function

GO: NA

KEGG:

id description
K11498 CENPE; centromeric protein E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141924 lncRNA upstream 107827 20348319 ~ 20424575 (+) True G105041
TU141928 lncRNA upstream 135130 20394308 ~ 20397272 (+) True G105044
TU141906 lncRNA upstream 250916 20280714 ~ 20281486 (+) True G105032
TU141892 lncRNA upstream 289047 20242905 ~ 20243355 (+) True G105018
TU141891 lncRNA upstream 294154 20237850 ~ 20238248 (+) True G105017
TU141972 lncRNA downstream 54205 20618790 ~ 20620441 (+) True G105074
TU141983 lncRNA downstream 84511 20649096 ~ 20652261 (+) True G105079
TU142218 lncRNA downstream 190708 20755293 ~ 20755532 (+) True G105235
TU142288 lncRNA downstream 263783 20828368 ~ 20860880 (+) True G105271
TU142287 lncRNA downstream 263852 20828437 ~ 20860880 (+) False G105271
XM_022674850.1 mRNA upstream 2384 20519360 ~ 20530018 (+) True grk1
XM_007254866.3 mRNA upstream 19262 20494467 ~ 20513140 (+) True tfdp1
XM_022674849.1 mRNA upstream 44112 20463644 ~ 20488290 (+) True tmco3
XM_022674848.1 mRNA upstream 44112 20463644 ~ 20488290 (+) False tmco3
XM_007254856.3 mRNA upstream 144040 20371424 ~ 20388362 (+) True lamp1
XM_022674352.1 mRNA downstream 1544 20566129 ~ 20593330 (+) True tmem255b
XM_007237404.3 mRNA downstream 201157 20765742 ~ 20774329 (+) True LOC103029654
XM_007237403.3 mRNA downstream 218485 20783070 ~ 20800531 (+) True LOC103029333
XM_007237402.3 mRNA downstream 239469 20804054 ~ 20827275 (+) True gtf3c3
XM_022674871.1 mRNA downstream 239469 20804054 ~ 20827275 (+) False gtf3c3
TU141369 other upstream 1609199 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 3405092 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 3638679 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 4024625 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 4074193 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 424688 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 454453 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 762607 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 2245494 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 3351050 23915635 ~ 23923771 (+) True G106017

Expression Profile