RNA id: XM_022674884.1


Basic Information

Item Value
RNA id XM_022674884.1
length 5277
RNA type mRNA
GC content 0.53
exon number 16
gene id nrp2
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21417436 ~ 21561654 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacatacacacacacgcgcacgcacgcacacacatccATACACACGCGCGCGCGTGCTCTCTCCACTCAGCTCGAGAACAGCACGGCACAACGCAACACGCACTCCAACACGCAGGTCGTTACAGAGCGATGCTGGTCAGAACGGGGCGAGCGCGCGCCGGAGTGTGAGCGTTTTACGCACGTTGCGCGTTTCAGGGGAGTGTGCGTTTATTCAGGCGTGTATAGTAAGTGTGGAACTGTGTGTGGAAGTGTCCAAGCCCACGCTGGGAATTTTGCACCGTGTGGAGGACCCGAGAAAAGAGATTTCCAGCCGGAGAACGAGGACCGCTCCGTGCGCCAGGGACGGATATGCCGGGAGCCCTCGCGCCGCCGCCGCGAGCCCCGCTTTCTCAGAGGACGGTTTAGTTCAGTCTCTCTCCTTCGTGATGTCAAAAAACACGCTGTAAACCTTCTCGACTCTTTCCCGAACTTCGCTTCTACCCGACACCACCCGAACAGCACCGACAGAACCGCGGAGCGACGAGAAACatctcctttttctttcccttcCCTTCCCGAAAAAACACACCGGTTTCTGATTCCATCAGCCACCGGCGACAGCGCCGAGACATGGATGTGTTACTGTCACTTCAACACATCGCTCTGATTCTGTGCTTCGCCCTCAAAGCAAGCGGACAAGAAGGTGAGAAatgtggtggacacctggatgCCAGCGATGCAGGTTACATCACATCACCCGGTTACCCTTTGGAGTACCCGCCGCACCAGAACTGTGAGTGGGTGATTACAGCAGCGGAGCCCACTCAACGCATCGTGCTGAACTTTAACCCCCACTTTGAGTTGGAGAGGCTCAACTGCAGgtacGACTTTATAGAGATCAGAGACGGCAACTCTGACTCGGCCGACCTGCTGGGGAAGCACTGCAGCAACATCGCCCCCCCAGCCATCATCTCCTCTGGCCCCGTTCTCCACATCAAGTTTGTGTCAGATTACGCTCACCAGGGCGCTGGCTTCTCGCTGCGCTACGAGATCCACAAGACCGGTTCAGAGCACTGTTTCCGCAACTTCACCGCTCCGACCGGCGTGATCGAGTCGCCCGACTTCCCCGACAAGTACCCCCACAACCTGGAATGCTCGTACATTATTATCGCCCCACCCCAGACCGAGGTCACCCTCACCTTTAAAACCTTCGACCTGGAGAACGACCCCTTGCTGATGGCCGAGGGCGACTGCAAATACGACTGGCTGGATGTGTGGGATGGCCTGCCTCAGGTGTCTCCGCAAATTGGACGCTACTGCGGCACGAAGATCCCTCCAGAGATCGTCTCCTCGACCGGGCTCCTGTCCCTCACCTTCCACACCGACATGGCCGTGGCCAAAGACGGATTTTCTGCCCGCTACAACATGACCCGCAAGGAAGTTAGCGACACCTTCCACTGCAGTACAGCTTTTGGTCTGGAGTCGGGCAAGATTTCTGATGAGCAGATCACCGCGTCCTCCTCCTTCTACGATGGACGCTGGCAGCCCCGGCTGGCCCGCCTCAATAACGAGGACAATGCCTGGACGCCATCAGAGGACAGCAACAAAGAGTACATTCAGGTGGACCTACACTTCCTGAAGGTCTTGACCGGCATCGCCACTCAGGGAGCCATTTCTAAAGAGACTCAGAAGTCTTACTACGTCACCACCTTCAAGCTGGAGGTCAGCACCAATGGAGAAGACTGGATGATCTACCGCCATGGCAAGAACCACAAGACTTTCCACGCCAACACAGACCCATCTGAAGTGGTCCTGAACCGAGTCCCTCAGCCAGTTCTGGCCCGATTTGTCCGTATTAAACCCCAAACCTGGAAGAACGGCATCGCCCTGCGTTTCGAGCTCTACGGATGCCAGATCACAGATGCTCCATGTTCTGAGCTGCAGGGCATGCTCTCAGGCTTGTTGCCAGATTCTCAGATCACGGCCTCTTCGGTGAGGGACCTGCACTGGGCCCCAGCAACCGCCCGCCTGGTGGCCAGCCGGTCAGGCTGGTTCCCTGCACCAGCGCAGCCCTTGGCTGGCGAGGAGTGGCTCCAGGTAGACTTGGCCACCACCAAGATGGTGCATGGGGTTATCACCCAGGGGGCACGCAGCGGAGAAGTGGGAAGCAACTCGGACAACCGGGCCTTCGTCCGCAAGTACCGCCTGGCCCACAGCCTCAACGGAAAAGACTGGAACTTTGTGATGGACAGCAAGACCAGTATGCCCAAAATTTTTGAGGGCAATTCACACTATGACACGCCAGAGCTGCGGCGCTTTGAGGAAATCCCGGCCCAGTTCATCAGGATCTACCCTGAGCGCTGGTCCCCTGCAGGCATCGGCATGAGGATGGAGGTGCTGGGCTGCAGCCTGCCAGAAACGTCCACAATAGCGGCAGAGACGTCCACCTCCACTCTGCCCCCCGCCGCAGAAAGCAGCACCGCCCACAAGCTCAGCTCTGGCTCCAGCACCTCTACCCCCTCTCCGGCGGTGCTGTGTGATTTCGAGCAGGGTTTTTGCGGATGGACCGACGACCCGGATGCTGACCTCAACTGGGTCCTGCACAGCTCCAGCAGAAGCACTGCCCTGGGCCAAAGTCAGGACCTCTCCATCGGCTCCAACAGTTTAGGAAACTACTTATTCATTGAGGCTAACCTTAAGACCCAAGGGAAAAAGGCAAGGCTCTTCAGTCCTGAAGTGGGCCCTGACACTGGCCCACTCTGCCTCAAGTTCTCTTATCAGCTTGAGGATGAAGGAACTCTACGAGTTTTGCTGCGCAACCCACTCCAGGAGGAGACTCTCCTCTGGGCTCTTCACGGCAATCAGGAACCCATCTGGAAGGAGGGACGCACCATCATACCTCGATCGCCCAAAGAATTTCAGGTCGTCATTGAAGGCGTCTTTGAGAAGGCCACAACAGGCCACATCTGGATTGATAATATCCACATGAGCTCGAGCACACCGCTGGAGGAGTGTACCCAACCTTTCACTGCCTTCCCTCCAGATATGACTGGGGGAGCCGTACCAGGCAGGAGTGAGCCAACAGTAGATACGCTGTCAGTACCACCCATATCCCCCAACTGGTATTACTTCATGGCTGGCGGAAGCGCCATTCTGTTCCTGGTCATTGCCATTGTCATGGCCATTGGCTGCCGCCGCCTGACGGCCAGGAGGAGCCGACCCACCATGGCCTACTACAGCCCTCACAATGCCCACTACCCGAATGGTGCAGGGCCCAGATCAGGGGCGGGCTCTAAGTTAACTGTTTGGGTGGAGAAGGGGGATGGAAACTCCTACTGGTGAGGGACTTGTGGAATTGGACTGAAAGCTACTGACAGACATAGAAGAGATCTATGTTGCAGACTTCTTGACAAAAGCCCAGTCGCCAAAACTGGAGAGCAAGAAAAGACTGAAAAGTTAGTTTAGTGGAAGGGAAGCTTCAAACTGTTCAAACATGTTCAAACAACCGTTACGATTGCCTTCTCACTACCGACTGATTTTGCGTATGGAACTACCCAAGTAAGAGCGGAATGGAACCAGCATCTACACtgcttttcttttgtctttttctgtgCTCCCTCACTCGCTGGACACGGTGGATCTCTTGTCTGGCTGGTGTACACAGCTTGTTTACTGCAGAATGTCCAGCCAGGGACTGGCAACAGGTGCCAGCTTGCTCTAACTGGCTCTCTGGAAGAGTTCCAGCATGGCTACTCTCACTGTGGGCTTAGGCCCATCCTCACGATGGATGCCGCGGATGAAAGCTCCTCAGCTGCGGAACCCTCAGGAGCTCAGCGAAGATGACGTGCAACCCGATGACCTTAATCACTGATCCAGGACTGAACTGACTCCGATGCTTTGTTAATCTTTGGCTGTTCTTTGGATGGGGAGTTGCCTCCTCAGCCAGTCCCAAACCAGGGCTAGGTTCCCAGAGCAGATGACGGGAAGGATCAAGAGATCAGGACTGTCTTCAAGCTGTCAGTGATCTAAATAGCGCTGTAAAACTGTTTCTCAACCAGTCTGATTTACAACAGGGGGGTGATTGATGGGTAAAATTCGCACTTGTCAAACTGTGTTTGCACTTGGAATAGATCCTGATGGCAATTACGATTTCCCTCTTTATTCTTTCGCCAAAGAAGGGAATGGACCACTTAGAAAAAAGTGATATACTGTGATGCTTGAGGAGACATCCCAAAAGATGACGGAACTGAAGGTTTTGTGTGGTGGGTGAGTCATGGGGCAGCATGCAATGCGATTGGAAATGGGTTTGTACCTTTTGTACCAAGTGTGGACATTGATCAAGCCTTGTGGACATGCATTAACAGATTCAGTGTACGAAAGAAGGCTCAGATTGAATTTCCACATCATGAGCCAGGCATCAGCTAAATTTGAATCGATGGGAAAGAGAGTACAGTTAGAatgaatggcaaaaaaaagaaaaaaaaaatccaaaattacATTTCGGCCCTAACAAAGTTTCCACCAGAGTGGTCAGAAATGCTTGGTGGCCTCAAATGATGCCAAAATGAGAGGCAAAGAAAGAACGAGAAAATCTCCTGCATGCTTCCTTCTATGATATCACCAGGGTGCTGCCTTTGTTCCTACTGTTCCTCACATTTTCGCATTTTCGCCacagaaatcccccctccctccctccaaaAAGAAAACTGCGTAGGACTGCTTCTTTGCGAGCCAGGAGCACGTAGGCGTGCGTTATTCCAACCAAACTGTCAGCATTCAGGCCTTGAAAACAAGCCGTATAAACAAAGACAGCTGCTTCCCTTAACCACCTCGTCCTAATGAGGATGGAGAGAGCGGCGGCACAGGAACAGGGTCTGCGGGCTCCCGACAGCTGGTAGCCATTTTCCTGTGCCGTAGGGTTTCCAGGTCTCCTAGAGCAGCAAATAGCGTCCGGCGCTGCCATATGCTTGCCCGTTCGTTCTTGGCCGCATTTCGGCTAATTTATCAAATTACATTTGATAAATTAGCATTAGTGTGCATCGGTTTTGAAAAGTGCAAGTTAACACATGCAAAAAAACACGCACTACTAGTGCGAAGACATGGCTAGCAGCAGTTGTGCAGTATTGTGGTCATATTGAATTCAGGGTATAAATGCAGtaccaaacactttttttctcaaCATTTTAGGTTTATAGTATGGATATGATCACACAAGTTCACACACattcttatatataaaaaaaataaataaaaaaggtccCCAAAAAGgattattggtaccactttaaaataag

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0001755 neural crest cell migration biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0017154 semaphorin receptor activity molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142419 lncRNA upstream 48232 21333583 ~ 21369204 (+) False G105357
TU142425 lncRNA upstream 206450 21210733 ~ 21210986 (+) True G105363
TU142295 lncRNA upstream 361953 20989273 ~ 21055483 (+) False G105276
TU142347 lncRNA upstream 401952 21013183 ~ 21015484 (+) True G105311
TU142341 lncRNA upstream 411582 21003745 ~ 21005854 (+) True G105305
TU142483 lncRNA downstream 41515 21591842 ~ 21592052 (+) True G105409
TU142540 lncRNA downstream 117525 21667852 ~ 21668149 (+) True G105456
TU142554 lncRNA downstream 277497 21827824 ~ 21833705 (+) True G105470
TU142563 lncRNA downstream 347649 21897976 ~ 21900325 (+) True G105479
TU142569 lncRNA downstream 367661 21917988 ~ 21920210 (+) True G105484
XM_022674877.1 mRNA upstream 460403 20944946 ~ 20957033 (+) False mdh1b
XM_007233712.3 mRNA upstream 460478 20945037 ~ 20956958 (+) True mdh1b
XM_022674878.1 mRNA upstream 461065 20944945 ~ 20956371 (+) False mdh1b
XM_022674873.1 mRNA upstream 508661 20860945 ~ 20908775 (+) True LOC103031253
XM_007237402.3 mRNA upstream 590161 20804054 ~ 20827275 (+) True gtf3c3
XM_015602212.2 mRNA downstream 61245 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA downstream 61245 21611572 ~ 21616436 (+) False LOC103037976
XM_022674390.1 mRNA downstream 376022 21926349 ~ 21934395 (+) True LOC103035679
XM_022674355.1 mRNA downstream 704758 22255085 ~ 22283453 (+) True LOC103046939
XM_022674890.1 mRNA downstream 762899 22313226 ~ 22480428 (+) True LOC103046323
TU142415 other upstream 49183 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 388446 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 424624 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 2494233 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 4290126 17119847 ~ 17127310 (+) False LOC103031769
XR_002650601.1 other downstream 1259752 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 2365308 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 2436880 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 2860881 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 3811417 25361744 ~ 25369439 (+) True LOC111193563

Expression Profile