RNA id: XM_022674890.1


Basic Information

Item Value
RNA id XM_022674890.1
length 8853
RNA type mRNA
GC content 0.50
exon number 36
gene id LOC103046323
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22313226 ~ 22480428 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctctcctctctctaacCGACGGGGAGTTTCGCAGGCGGACGGGCGGCGCGGAAAACGCTGTGaaattgtgaaaatgtaagttttACTGGCCGGCGGACGGGAATTTCCACCAGGATGACTCGGTTACCGGAGCGGAGGACTAATTTTCCCCGTTTTTAACTGATTTTTAATCCTCTCGGTGTGGGATTGGGTGGCTGGAGGCGAGTCGCGGTCTGAGGCGATGCTCCAGAGGAAGCCTTCAGCCCGCAGCAGGGTCGCGCTTCTGCCTGCCTCACTGTCATGAGCTCCGGTGAGGGAGCCCCGCCAGCCCCGTGGCCGGAGCTCCACGCCCCGCCTCAGGGGGAGGCCGAGCAGGAGGCTGCCGGGCTCTCCGGAGCTCCGGAAACGCCGCGGGACTTCAGCtgcagtggaggaggaggagaggtggTGAGTGAGGAAGATCACGGAGCAACTCTGCCGTACCCATCCCTCGCCCCGGTGGTGCTTTTCTGTCTGCAACAGAGCACAAGACCCCGCAGCTGGTGCCTCGCACTTGTGTGCAGTCCCTGGTTTGAGCGAGTCAGCATGTTGGTGATTCTGCTCAATTGCGTCACCCTCGGCATGTTCCAGCCGTGCCAGGACCTGGAGTGCCACTCGGAGAAGTGCAGCATACTGCAGGCATTTGATGACTTCATCTTTGCGTTCTTTGCTGTGGAGATGGTAGTGAAGATGGTGGCCCTGGGGGTGTTTGGACCGAGGTGTTACCTTGGTGACACGTGGAACCGACTGGACCTCTTTATCGTCATGGCAGGGATGTTGGAGTACTCTCTAGATGGACACAACGTTAGCTTCTCTGCAATCAGAACTGTCCGAGTTCTCAGACCTCTTCGGGCCATCAACAGAGTGCCCAgtATGCGCATCTTGGTGACCTTGCTTTTGGATACATTGCCCATGCTGGGGAATGTTTTGCTGCTATGTTTCTTTGTATTCTTTATCTTCGGGATTGTTGGTGTACAGCTGTGGGCGGGGCTACTCAGGAACCGCTGTTTCCTAGATGACAACGTGAGGACGATGTACAATTTTACTCAGTCACTCAGCCCTTACTACAGGCCCGACGACTCTGACGACTTCCCCTTCATCTGCTCGACCAATCGGGAAAACGGAATGCTGCGCTGCTCCAGCGTCCCGCCGCGCAGAGTGGGAGGAGTCTACTGCCAGCTCAGTGCAGATAATATCACTGACCACACCCCTAAAGAGGCCACCCATAGTGGGTGTGTCAATTGGAATGCCTATTACAACAACTGCAGGGCGAGCGAGCACAATCCACACAATGGAGCCATCAACTTCGACAACATAGGATATGCCTGGATTGCCATCTTTCAGgTCATCACTTTGGAGGGATGGGTGGATATCATGTACTATGTCATGGACGCGCATTCCTTTTACAACTTCATCTATTTCATCTTCCTCATTATTGTGGGCTCCTTTTTCATGATCAACCTGTGCCTGGTCGTCATCGCAACACAATTTTCAGAAACCAAGCAGCGTGAGAACCAGCTGATGCGGGAGCAGCGGGCTCGTTTCCGCAGCAACGAGTCAACGCTAGCTAGCTTGACCGAGCCTGGCTCCTGCTACGAAGAGATGATCAAATACCTGAGACACCTCTGCCGTAAGCTCGGTCGGCAGGTCAGCCATGTCTACGGCCAAGTGCGACCTTGTCGGCGGGGCAAGGCCTCCAGCCCTGAAAACGGCACTACGGCCGGGGTGGGCACTAACAGGCCCTATAGCAGCAGGGAGAAATTTGATCTGACTCGACACCTTatacaccaccatcaccatcaaccCCACCACCTCCACAATCATCGCCAGCGTCACTGCAATGGTATGGATGTGGGCACACTGGAAATGAAGGCCCTTCATTTGGGTGGTGAAGGTCAGGTTCTCAAACAGACTCCCCCTCTCCCCCTTGCTTTACCCCACATAAAGGGTCTGAACTACCCAACCATACTGCCCTCCGCACTtttcacacactcacgcacaaaTCCTGGCTGCGCGAGCAGGGTCAAGACCCCTGCAGCCAGCCACTCGCAATACGACAGGACAGTCCACAGAGGGTTCCACGATAGCTACAACAAAGCGCAGCCTGGTGTGTACCCAGATGTGTGCTCAAGTGCGTGCATAGAAGGCGGCGATGGTCTGGCACCCGGCGAGCTTTCAGCATGCCCAATTTGCGCCCCTGAGGGCAGCGGCGTGACCTACAACTCTGACAGTGGCTCGGACATGGAGAAGCAGATGAGGGAGAACCCGACTGGGAACTGCTTCAgcgtgtgtgtgcagtgtgtcagGACAGTGCTGAGGAGGATTGTGGACAGCAAGTACTTCAATAGAGGGATCATGTTTGCAATCCTCATCAATACACTCAGCATGGGAGTGGAGTACCATGAACAGCCGGCCGAGCTGACAGATGTGTTGGAGATCAGTAATATAGTCTTCACCAGCCTGTTTGCCCTAGAGatgctgctgaagctgctggccTGCGGTCTATTTGGCTACATCAGCAACCCCTACAACATCTTTGATTTGATCATTGTTATCATCAGtgtgtgggaGATCATAGGGCAGGCGGACGGAGGTTTGTCGGTTCTGCGGACGTTTCGCCTTCTGAGGGTTCTAAAACTGGTGCGGTTCATGCCAGCCCTACGCAGACAGCTGGTGGTCCTAATGAAGACCATGGACAACGTGGCCACTTTCTGCATGCTGCTTATGCTCTTCATATTCATCTTCAGTATACTGGGCATGCATCTGTTTGGGTGCAAGTTCACTCTGCGCTTGGAAAACGGGGACACCGTCTCTGACAGGAAGAATTTTGACTCTCTCCTCTGGGCCATTGTCACCGTGTTCCAGATATTGACACAGGAGGACTGGAACACAGTGTTATATAACGGCATGGCCTCCACATCTCCGTGGGCGGCCCTGTACTTCGTGGCTCTGATGACCTTCGGCAATTATGTGCTCTTCAACCTGTTGGTGGCCATTTTAGTGGAGGGCTTCCAGGCTGAGGGAGATGCCAGCAGGTCAGAGAGTGAAGAtgatgtgctttcctctgacTTTGATGAAGAGGACAAACTGAGGGagcttttaaactctgGGTCTGAGGTGAAAATGCAGACACTGATGCCAATCTCTAACGGACATTTGGAGCCCAGAGCAGCAATGCCACCGCACATCATACACACCCACGCCACCGCCACGCCTAGGACTGAGGTCTCCCACATTGACAGCCAGTCCCGGCGCAGCAGCAACGCCTCTAATGAGCACCATGACCAGAGATCACTGaCCAGTCTGTGGGGAAGTCGCCGTTCAAGCTGGAATAGTCTAGGCCACGCCCCCAGTCTGAAAAGACGTGGTCAGTCAGGGGAGCGTGAGTCACTTCTTTCGGGCGAGGGGCGGGACAGCTTGGATgatgaccaatcagaggagggGAAGTCCAGCAGGACGGGAAGCCTGGGCGGAGTGTCTCGATTTGAATCGTTCGACATGCCAGAACTGCTGCAGGTTCCGCCCATGACACGCCCCTATGTGGAGTGCAACGGCAGACTGGACGGGTCCTACCCTTCGACTCCATACACACCTCAGCGACAgccttcacacacacagactgacgACGATGAGGAATTTGAAGAGagcTGGTGTCTTATCTTGAAGAGGGTTCTGGAGCCATATAAACCCCAGTGGTGCAGAGATCACGAGGAATGGTCTCTGTATCTGTTCGCTCCTCAAAATGAGTTCCGGCTGCGTTGCCAGAAGGTCATCACTCATAAGATGTTTGATCATATTGTCCTGGTTTTCATCTTCCTCAATTGCATCACCATTGCACTAGAGAGACCTGACATCCAACCTTACAGCAtgGAGCGTGTCTTCCTCAGTGTCTCCAACTACATCTTCACTGTGATCTTTGTAGCTGAAATGACAGTCAAGGTGGTGGCTATGGGGATGTATGTGGGTCCGGGCTCATATCTGCAGAGCAGCTGGAACGTTCTTGATGGCCTGCTGGTGTTTGTGTCTATAGTGGACATTCTGGTGTCACTGGCTTCATCTGGCGGAAACCGCATCCTGGGAATTTTACGAGTCCTGCGTCTCCTCAGAACACTGAGGCCGCTCAGGGTTATAAGCAGAGCTCCAGGACTAAAGCTGGTGGTTGAAACACTGATAACGTCTCTTCGACCAATCGGGAATATTGTGCTCATCTGTTGTGCTTTCTTCATTGTATTTGGTATTTTAGGAGTCCAGCTCTTTAAGGGGAAGTTTTATCACTGTGAAGGCTTTGACACCAGAAACATAACCAACAAGTCAGAGTGTCTGCACGCACGCTACCGCTGGGTCCGCAGGAAGTACAACTTTGACAACCTGGGCCAGgCTCTGATGTCGCTGTTTGTCCTGTCATCTAAGGACGGTTGGGTCAGCATCATGTATGATGGGTTAGATGCGGTGGCTGTGGACCAGCAGCCCATAAGGAACCATAACCCCTGGATGCTGCTGTACTTTATTTCCTTCCTGCTGATTGTCAGTTTTTTTGTGCTGAACATGTTTGTGGGCGTGGTGGTGGAGAACTTCCACAAGTGCCGGCAGGaccaggaggaagaggaggccCGGCTGAGGGAGGAAAAGAGGCAGCGACGCCTGGAGAAAAGGCGCAGGAagGCCCTTCAGAGACCGTATTATGCAGACTATTCTCCTGCTCGCCTCTACATCCACACTCTCTGCACGAACCACTACCTGGACCTCTTCATCACCGTCATCATTGGCATCAACGTCCTCACCATGTCCATGGAGCACTACAACCAGCCCAAGCGTCTGGAGGAAGCCCTAAAGTACTTCAACTACGGCTTTACTGTGATCTTTGTGATTGAGTCTGTGCTGAAACTGGTTGCCTTTGGCTTCAGGAGGTTTTTCAAAGAAAGgtgGAATCAGCTGGACTTGGCCATTGTTCTGCTGTCTGTTATGGGCATTACCCTTGAGGAGATTGACCTGAATGCCTCATTACCCATTAACCCAACCATCATTCGCATCATGAGAGTACTTCGCATTGCCAGAGTGCTGAAGCTGCTTAAAATGGCCACAGGAATGAGATCTTTGCTGGACACAGTGGTGCAAGCTCTACCCCAGgttggGAATCTGGGTCTCctctttatgctgcttttcttcatttatGCCGCTCTGGGAGTGGAGCTCTTCGGAAAACTCGAATGCTCAGAAGAGAATCCATGTGAAGGTTTAAGCAGACACGCCACATTCGAGAACTTTGGCATGGCATTTCTTACCTTGTTCAGAGTGTCTACTGGAGACAACTGGAATGGAATCATGAAGGACACTCTGCGGGAGTGTAAGAGTGGAGACCGCTGTTTGAGCTACCTGCCACTGGTGTCCCCGCTGTACTTTGTGACATTCGTTCTGGTGGCTCAGTTTGTGCTGGTGAACGTGGTGGTGGCCGTTCTCATGAAGCATCTGGAGGAGAGCAACAAGGAGGCCTTAGAGGAGGCAGAGATGGAGGCAGCTCTGCAGCTGGAGCTGCAGGCAAACCGACGACAGAGCAATGCCTCTATGGGCGGAGTTTCTGGGCTGGAGAATAAAGCCGTGGGCCCGGCACCTGAGCAGcATGAAGACCCTCAGAATGGCAACCTGCTCTCAGTGGGGAAGCCTTCCATATCAAGGATGCTGTCTTTGCCAAATGACAGTTACATGTTTTACCCCATTAAATCTGGACACAGGCCTACTGATCAGCCCATCTCCAAGCAGCAGTCCGTTGATTGGAATACACTAGCAGGTTCTTCTCTTTCAGTCAGTTCTCAGCCATGTGAATGGGGATCCCTGCTGCAGGCTCCAGTGGCAGTGCCACAGACACCCTCCGTCACCCACTTACAATCCCGACCACAGCAGCACCCACAAAGAAACAGTACCCTCAGGATGCTTCAAAGACAGGAGGCAATCAAGAGCGATTCTGTTGATTCAGCTCACCCCGGCTCCCGAGACAACCTGCTTTTGCATTGCTCCGATGACATTTTGCACCTCAAAGTACCCAGCGTTCCTCTGACCGGAGGCTCCGCCCCCTGCACCCCTCAAGCCACGCCCCCTCTTCTCCCTCGCAGCCGAACAGCCAGCGTGCAGACAAGAAGGCATGTGTACAGCCAGCGGAGCATTCCCTCCCGCAAGCCTGCACTCACCCAGCCAACACACGCACTAACTATTACAGACAAACATCCTCGTGCACATCTGCCTAACACGGACGAGGTGGACGAGGAGGTTCAACAAATCATATGCTCCAGCCAAAGGAGAGACTCCTCCCAGCAGCTTAGACGTAGCCACACGTTATCCCCTTACGTTGCTGCCCCATCGTGTTCCGCTAGCCAATCACAGAGCTCGGAGCAAAGTGAGGGTCCCCGGGGTTGCCACCTGCGGAAGTACTACAGCATGGATGTACATGGCTTTCTCACTCAGCCGGTCGGCTGCCCCCGCCGCCACTCCACACACGGGGAGGAGCTACAGCAGGAGCAAAGCAGGTCGTCCTGTCAAACTCGAGGCAGATCAGTATCCCCGGTGCCCAGGAAGGAGAAAATGAGTCCGCCTTGCATTTCTATAGACCCGCCCACTGACTCCACTGAGATCCAGTCTTCAGTGTCCAGTCAGGAGAGCAGCACAGTCCTGAGGAGGCGGGCGCCGTCGTTCGAGTCAGCCCTCACACTGATCACCTTGGAACCTCAGGATCGTCCTGAATCTCCGCCCATCACAAAATCACCCCCTGTGCAACTAGAACCTCATCCCGAGCCCCACTCCAAGCCTTGTTTGCCAGGCCGTCTGCCCCTCCCCCAGTTTTCCTTCGACCAGTCGGACGTCAGCTCCCTGAGCAGTCTGTCGGAACTGCTGTCAGACAGTGACCAGTCCTCGCACTCCTTCCCTCTTGAGGCCCAATCAGAGAGCGCGGGGTCTGTCGGGAGCGCCGCGGCTCGTAGTTCGTTCAGGAAGAAGGGGCTGGTCAGAATGGGTAGCTCTAGGGATTGCGCAGACCCTGATTCTGTTGCCTGAGCAACCAAAAACGTAAGGCATCGACAGTGCAGTGCACCCATCAGGTAGGAATCTTCAAAGCAGGAAAGTGAGGTCAAGTCATGAGTTATGCAATGAATTTCCAGCAGAACTGACTGAAATCCTTCCTAATCATATTGATTAGGAGTATCGGGAGTAGTAATATTGATCTAAAAACTGATTTGTCAGTGATGTTTCAGCCTCTTGAAGCTCACAAACTGATGCAGGAGATCATCAAACTCTTGTGATATTTAATAGCAACCCTTAAatcatttctatatattttagttactGTTAGAGCCCTATATTATGGTTAACATGGTTGTTCTAGAACCCTGTCCTGAAACTAAGGCGAATGCTAGCTTAGTTTATGGTATTAAAACCTGAACTATGAACtatgatgtgtgtgtttcagtgtctaAGAAAGATGTAtgcttcttattttttctttacagtttgtTCAGAGGGAGGGGAGCTGCTGACATGTTTTCATGGTTTTCATGAAACTATGATGAACAGgtctaaacacacactgcatggCAGCAATATCAGGACTGTGCCACAGAGTGGGTGAAATATATAGTGaagtaatatatttattggATGCAGGGATTGGCctgttgtatttttataaaaaggTCAGAGTTTTGCACATGAAATCAGAAAGTCGTTTTGACTATTTGAACATCTTAATTAGAGCAAACTTCTGATTTCTGTTCATGGTGCCTGGAGAACCGCGAGGTTCCCAGTGCTGTGATGAAGCATGCGAATGATGGTTTAAATGCTAATTCAGTTACCGCTTCGATGAACACTTCTGCCAGTCAAGGAGTAAAACGTGGGGTGCAGAATCCCATTCAACCTTATTTTGGCACTTTTTTGGATGCATCCCAAAGCCATCCTAGTTGCTGTTACATTGTTCCACtgttttttacatgatgtacaTGATGAGAGAGCACTGTTGTCCTCTTAGTACAGTCACTTTTACCACTCAGATGAAAGTGTACATACACGTTTGGGTGAAGTTATGAAACATTTCTTCAGCAACCACAATCATAGTTTTTAACCACACTCTGTAATTTATAGTGTTCTTGTTTACATAAGATTTGTTGTGTAAATCATATATTCTTAAGGGTAACTTATTTTGGGGCTCACTCTTTCTCCATTGTCAGTTATGTAAgtgtcacacaaaaaccttgcATCTCCAAAATAGCAGCTTGACAGGAAAAAGAAAGTAAGTTCAAGAAGATTTCAttaattttagcattttgaagCATTTGATTAACTGATTCACTATTCACAATATAGTAAACtgacttaagtaaaagtaaaatattttgtagACTATGTTTCTAAACAgtttctcaataaaaaaaacattggtatGTCACAATTATATTCTGtcacataaacaaaacaaacatgaCTACTATATGAAATGTTGGACAGTTGGATGCCCTATTACTCATTTTAGAAAATGTTAGGTGTGATCAtgtttacaggagaaaaaatgttcatttgtGCTGTCCATGCTTATCTACAGTCATTAGGTTGACATTCGACATTTCAAACAAAGCTATAGTAAATCTAACTttcacagattcacagattCATCAGTAAATATACAGgaattggacaatgaaactgaaacacctgtcattttagtgtgggaggattcatggctaaattggagcaacCTGGTGGTCAATCCTCATTAATTGCGCAtttcaccagtaagagcagagtgtgaagattcaattagcagggtaagagcacagttttactcaacatattgcaat

Function

GO: NA

KEGG:

id description
K04854 CACNA1G, CAV3.1; voltage-dependent calcium channel T type alpha-1G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142655 lncRNA upstream 56649 22256272 ~ 22256577 (+) False LOC103046939
TU142653 lncRNA upstream 59613 22253376 ~ 22253613 (+) True G105547
TU142648 lncRNA upstream 81906 22231007 ~ 22231320 (+) True G105542
TU142590 lncRNA upstream 320663 21990430 ~ 21992563 (+) True G105501
TU142580 lncRNA upstream 347689 21964744 ~ 21965537 (+) False G105491
TU142690 lncRNA downstream 7810 22488238 ~ 22490742 (+) False G105581
TU142692 lncRNA downstream 7810 22488238 ~ 22490742 (+) False G105581
TU142693 lncRNA downstream 7810 22488238 ~ 22490742 (+) True G105581
TU142733 lncRNA downstream 60745 22541173 ~ 22542665 (+) False LOC103045705
TU142768 lncRNA downstream 211223 22691651 ~ 22692463 (+) True G105645
XM_022674355.1 mRNA upstream 29773 22255085 ~ 22283453 (+) True LOC103046939
XM_022674390.1 mRNA upstream 378831 21926349 ~ 21934395 (+) True LOC103035679
XM_015602212.2 mRNA upstream 696790 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA upstream 696790 21611572 ~ 21616436 (+) False LOC103037976
XM_022674883.1 mRNA upstream 751572 21417437 ~ 21561654 (+) False nrp2
XM_022674356.1 mRNA downstream 29018 22509446 ~ 22517576 (+) True LOC111193458
XM_022674357.1 mRNA downstream 44829 22525257 ~ 22588961 (+) True LOC103045705
XM_007260273.3 mRNA downstream 112210 22592638 ~ 22599854 (+) True alkbh5
XM_022674892.1 mRNA downstream 120782 22601210 ~ 22616958 (+) False LOC103042026
XM_007260274.2 mRNA downstream 120783 22601211 ~ 22616958 (+) True LOC103042026
TU142415 other upstream 944973 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 1284236 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 1320414 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 3390023 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 5185916 17119847 ~ 17127310 (+) False LOC103031769
XR_002650601.1 other downstream 329651 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 1435207 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 1506779 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 1930780 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 2881316 25361744 ~ 25369439 (+) True LOC111193563

Expression Profile