RNA id: XM_022674897.1


Basic Information

Item Value
RNA id XM_022674897.1
length 2859
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC103041008
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22671713 ~ 22689088 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACCTGTTGTCTGCTCGCGGTTTATGGTCGCTCGTGCAGTGAGAGAGGGTCGTTACATCCCTCTGTATCAGACTGGTGAGTGATTCTGAAGCTCCTCTTTCAGAGACAGGCGTTAGTCTGTTTACTCCGCACACTTCTCCCTCGTGAGCAGGGCTGTATGATTTTCTTTCTGTTATATAAGTTACgatttaaaaatacaggaatttcCCCCATTTTCACCAGAAGATATTGGTCCAACATGTCTCAGTATTATTAACGCACTCTGGGTATTCaagattggagtaaaataagTACCATTGGTCAGATATGCggtacaagtcaaaagtttggtaacagctctcttctcattcaacatgttttatttcttttcatgATCATTTGTATGTAGTAAACTTGATATTGAAGATATTAAAGTGATAGAAAATAATTCCACGTGTTGCTgtattaaataaagtgttaaacaaactagaatatggtttatattttagattattctaagtagcacatttatctttaaggacagatctgcacactcttggtattttaatctcattgtctttatgaggtagagtcatctggaataaTTTTCTTAGAGGCTTGAAGGAATTAGTTCCttgaggtgctgaacaataatagttactgcttttccttcacgctgtaaagctccagctcatcccaaatccgCTTTTTTGCATTTACTACGCAATTCcgattccatatgtgtcccttaattattttcatgtctttaatattaatctacaatgcagaagataaattaaatataaaaataaaaaaaatctattagaagttgtgtccaaacttttgactgataatGTAATCCGCCACTGGTACATATctcatgaaaaaaatgaatagtgtaaattttactattgtatcaaatgataaaataataaaaattaatcattaaaatgtGCCTATGTCCCAGGGCAAAAGGAAGTCAAAACCACTGCACTGCCTGTGGGGTAAGAGTctggggcctcctgcattgaatgttgaTGTGATTTTTGGAGTCCATGTTCTTTGAGCGAAGAACATAGAACATAGAAGACGTAATCTGCAAGAGAGTTTCACAACTTATGGTGCCTTATACCTTATTTGgcatatgtaataaaatgtcaAATGATAAAGTATAATGTCTTTCTGACAGTCCCTTTCTAGGGATGTACTCGGAGGATTGGAGTAGATTGGGACCTAGAGGAGAGAGGAGTGCGATATCCAATCTCAGTTTCAGTAAACTACCAGATGAAGACCTCCGGAAAAGGGAGATCATTCGCAGAGACTCAGAAGAGCCGATACCTGACGACCGCTACCATGGCGTCTACTTTGCCATGCTGTTGGCTGGCGTGGGCTTCCTGCTACCATACAATAGCTTCATAACAGATGTGGATTACCTCCATCGCAAATTTGCCGgctcctCTATCGTGTTTGATATGAGTCTGACGTATATACTGGTGGCTCTTGGTGCTGTCATTCTAAACAACGCCCTGGTGGAGAGATTGAGTTTACACACACGCATAAGTGTTgGGTATCTCTTTGCACTGGGCCCTCtggtgtttgtgagtgtgtgtgacgTTTGGCTAGAACTTTTTAATTCACAGCAATCCTACGCCATAACCCTCGCTGCCGTTGCCATCGTCGCCTTTGGCTGTACAGTGCAGCAATCCAGTTTCTATGGATACACCGGAATGCTGCCAAAGCGATACACCCAGGGTGTGATGACTGGAGAAAGCACGGCGGGAGTGATCGTCTCACTCAGCCGGATCTTCACCAAGCTGCTGGTGGAGAACGAGAAGAACAAcaccattatttttttcctcttttccgTTTCCATGGAGACCCTCTGCTTCTTGTTGCACATGCTGGTGCGGCGGACCCGCTTTGTACGTCACCACACTGAAAGGGCTCGCTTGGGTGACGCCTGGGTCAACGGTCAGATCAGTGCAGCTTCAGTGCAGCAGAGGAGCAGATATCAGATACACAGAGATGCCAGCACAGAAGATGAGGATGGTCCTATCTCCAGCACCCCAGTTGAAGCCGATGCTGCTAACCTCAATAATGGTGACGGAACGTACGTCAGATTTGATGTCTCCAAACCAAAGACCAAGAGGACATGGAGCAGTATCAAAgATGTGATGGTGCGGAGGTGTGCAGTCGCCCGTGTGATCTGGCCCTACATGCTCTCCATCTCTGTGACGTACTTCATAACCCTGTGTCTGTTCCCGGGGCTGGAGTCCGAGCTGCAGAATGACACACTGGGAGAGTGGCTACCCATTCTCACTATGGCTCTGTTTAACATGGCTGACTTCGTGGGCAAGATCCTGGCTGCGTGCCCGTATGAATGGGGTGGTGTGCAGCTGCTGGTGTGCTCTTGCGTCCGTGTCCTGTTCCTGCCCCTCTTCGTGATGTGTGTGTCTCCGGCACAGCACCCCCTGCTGTCTCACCCAGCCTGGCCCTGTGCCTTCTCCCTACTGCTGGGCATCAGCAACGGCTATCTGGGCTCTGTGCCAATGATCCAGGCAGCGGGGAATGTACCACCACAACAAAGAGAGCTGGCAGGGAACACCATGACCGTGTCCTACATGGCTGGCCTGATGCTCGGGTCTGTAGTGTCCTATTCAACCTTCAGCCTCACCTCAcgctctccacacacacatacactcaaactcaactcaaccctcACACTACACAGCTACACACCTGGGTTTTGACACCTTCGACTCCAAatcttcacacactcacacatatttATTCACACATTTGTTTGCACTGCTGCAGAAGTTATGAAAAAGTGAGGACGATGTGTTCTGTCTCGATGTAATAAACACCATTTAGCCAGTT

Function

GO: NA

KEGG:

id description
K15014 SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142733 lncRNA upstream 129499 22541173 ~ 22542665 (+) False LOC103045705
TU142690 lncRNA upstream 181422 22488238 ~ 22490742 (+) False G105581
TU142692 lncRNA upstream 181422 22488238 ~ 22490742 (+) False G105581
TU142693 lncRNA upstream 181422 22488238 ~ 22490742 (+) True G105581
TU142689 lncRNA upstream 205365 22409426 ~ 22466799 (+) True G105580
TU142768 lncRNA downstream 2563 22691651 ~ 22692463 (+) True G105645
TU142777 lncRNA downstream 17412 22706500 ~ 22706805 (+) True G105654
TU142793 lncRNA downstream 90182 22779270 ~ 22791181 (+) True G105668
TU142896 lncRNA downstream 236029 22925117 ~ 22928356 (+) True G105760
TU142931 lncRNA downstream 438867 23127955 ~ 23128154 (+) True G105793
XM_022674893.1 mRNA upstream 40450 22619030 ~ 22631714 (+) True LOC103042343
XM_022674892.1 mRNA upstream 55206 22601210 ~ 22616958 (+) False LOC103042026
XM_007260274.2 mRNA upstream 55206 22601211 ~ 22616958 (+) True LOC103042026
XM_022674891.1 mRNA upstream 55206 22603927 ~ 22616958 (+) False LOC103042026
XM_007260273.3 mRNA upstream 72310 22592638 ~ 22599854 (+) True alkbh5
XM_022674898.1 mRNA downstream 73350 22762438 ~ 22774207 (+) True LOC103039247
XM_007260264.3 mRNA downstream 120991 22810079 ~ 22820096 (+) True LOC103038624
XM_007260284.3 mRNA downstream 593643 23282731 ~ 23286928 (+) True LOC103045101
XM_022674906.1 mRNA downstream 603105 23292193 ~ 23305156 (+) True LOC103044794
XM_022674909.1 mRNA downstream 624544 23313632 ~ 23373618 (+) False prkcb
TU142415 other upstream 1303911 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 1643174 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 1679352 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 3748961 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 5544854 17119847 ~ 17127310 (+) False LOC103031769
XR_002650601.1 other downstream 120991 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 1226547 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 1298119 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 1722120 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 2672656 25361744 ~ 25369439 (+) True LOC111193563

Expression Profile