RNA id: XM_022674907.1


Basic Information

Item Value
RNA id XM_022674907.1
length 3838
RNA type mRNA
GC content 0.43
exon number 17
gene id prkcb
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23313632 ~ 23390445 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGgttgagctgtagagcagcgATTCGGGGCGGCGGACGGGGTGAGCGCGCGCGCGTCTCCGCATCGGGCTCgctgtgtttctctctcgcGCTTCTCTCGCCACGTTTCGGTTCCGCCGCTTCCCGTCCCCCCGCCGGCTCTCCAGCCGCCTCTCAGCCTCCAAACATGGCCGACCCAGCGGCGCCCGGCGACGCGGAGAGCGAGGGCGGCGCGCGGGGCTTTGCCAGGCAGGGCGCGCTCCGGCAGAAGAACGTGCACGAGGTGAAGGACCACAAGTTCATCGCGCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGTTTCGGCAAACAAGGCTTCCAGTGCCAAGtgtGTTGTTTCGTGGTGCATAAACGCTGCCATGAGTTCGTTACTTTCTCCTGCCCAGGAGCAGACAAAGGTCCTGCATCAGATGACCCTCGCAGTAAACACAAATTTAAGGTACACACATACTCCAGTCCTACATTCTGCGACCACTGCGGATCCCTGCTTTATGGACTTATACACCAGGGGATGAAATGTGACAaCTGCAtgatgaatattcataagcgaTGTGTGACCAATGTCCCCAGCCTGTGTGGGACGGATCACACGGAGAGGAGAGGACGACTGCATATCAGCGCTGATATAAAAGAAGGCACGCTCACCGTGACCATCGGGGATGGTCGTAACTTGGTGCCCATGGACCCCAATGGTTTGTCGGACCCGTATGTGAAGCTTAAGCTTATCCCGGACCCCAAGAGTGAGAGCAAGCAGAAGACCAAAACCATCAAGTGCTCCCTGAATCCCACCTTTAATGAAACCTTCACTTTTCATCTACGGGAGACGGATAATAACCGGCGTCTGTCTGTGGAGGTGTGGGACTGGGATCTGACCAGCAGGAATGACTTCAtgggctctctctcttttggtaTCTCTGAGCTCCAGAAAAAAGGGGTCAGTGGCTGGTATAAATTGTTGGGCCAAGAAGAAGGGGAGTATTTTAACGTTCCAGTTCAGCCGGATGGAGAGGAAGGCAACGATGAACTGCGTCAGAAATTTGAGAGGGCCAGGATTGGTCCAGGCAATAAGAATACCGACAGTTCATCGTCCAACGACATCTCCAAATACGATGCTAATGGCAACCAGGATCGAGTGAAACTCTCAGATTTCAATTTTGTCATGGTGCTTGGCAAAGGAAGCTTTGGAAAGgTGATGCTGGCGGAGCGTAAGGGAACGGACGAGCTGTACGCAGTGAAGATCCTGAAGAAGGACGTGGTGATACAGGACGATGATGTGGAGTGTACGATGGTGGAGAAGAGAGTTCTTGCTCTGTCTGGAAAGCCTCCTTTCCTCACGCAGCTGCACTCCTGCTTTCAGACCATGGATCGCCTGTATTTTGTGATGGAGTACATTAATGGTGGGGACCTGATGTACCAGATACAGCAAGTAGGGAAGTTTAAGGAACCACATGCTGTgtTCTATGCTGCTGAGATTGCTATTGGTCTATTCTTCCTCCATTCAAAAGGCATCATTTATAGAGATCTAAAGCTGGATAACGTGATGTTGGATGCAGAGGGCCATATTAAGATTGCAGATTTTGGAATGTGCAAGGAGAACATGCTGGATGGTGTCACCACAAAAACCTTCTGTGGGACCCCAGACTACATCGCCCCTgagatcattgCTTATCAACCCTATGGAAAGTCTGTTGACTGGTGGGCCTATGGTGTTCTACTTTATGAAATGTTAGCAGGACAGCCCCCATTTGATGGTGAAGATGAAGACGAGCTTTTCCAGTCCATCATGGAACACCATGTATCCTATCCGAAATCCATGTCTAAAGAAGCAGTGGCCATATGCAAGGGTTTGATGACTAAGCACCCAGGGAAGCGTTTGGGCTGTGGTCCAGAGGGAGAGCGAGATATTAAGGAACACGCATTCTTCCGTTACATGGACTGGGAAAAACTGCAAAACAAAGAGGTTCAACCTCCATTCAAACCCAAAGCATGCGGTCGGGATGCAGAGAACTTTGACCGCTTTTTCACCCGTCATCCTCCAGTCCTGACCCCTCCAGACCAGGAAGTGATTCTTAACCTGGACCAGGAAGAGTTCCAGGGTTTCTCTTATGTTAACCCAGAATACGCAGCTCAGGAGTTCAAGTAGCCGGTAACGGCGCTTGACACGGGGACCAATCAGATTGGAGCTTTTCGAAAAGACTGAGGCACAATGAGCCGAGCACGACAGAAAGTTCAGAGTGAacctaaatcagatttttatcaGTGGACCTAGTATGTTCTTACATTTGCCCAtgcctttgttttttaatgttggttatgcattacaaataaaacaatatattttaaacatgctcacacacacatcggCCATTCGGTTTTTAGTGGACGCAACAGATTAAGAGAACTATGTGgcttttattattcattatttagttCCAGACTCAACATTTTGAAAGGGGAATTTTATAAGTTTCTCAAGATTTAAAAGATATAAACATAAACTGAAGTGATTCAGAGTGGTTTGGTGTAACGCTTGCTTAAGCCCTATTCATATTGATTTAGTTTTACACGCGGAGCAATTTGTGGAGTAATTACACACAGGACATCTGAACGTTTAATCAAATTGACTTAATCAAATCTGCATTTGCATTGGATAAGAAATCACAGCAttaattttaatgattaatgatttaCACACTGTTGACCCCGCCAAAAATGTCATAATAACCAATATTGCTACTTACTTACagtcaaaaacaacaattttgttaaaaaaaaaagatcagctCCATTTTTATAACACATAGAATATCTACCTTATTATTTTCCCTAATGACACAATGGGGGCCCATCTTCGTTTGCtttgtattaaaacatattttagggGTATATAGCTTATAATCTCCAACACTTTTCAAAAAAAGGACCTGCTTCTGTTGTTATAAGAGCTTTAAAGTTTAAAACTTCCACCCAGACCTGTACATGTCTGCTCTTACTGTTAGCAGAAGAGAAACCAACACCAGAAACTTTCCTACCCACAGAAATGGATCAGTTCTGAAGGTCTGCTGGAGCAGATGTGTATCAGTGCTTGAGGAATTCTTAGATTGTAGGTTATCTTTTAGGCTAATGTCTTACTAAATCTTAGCAAATAAAATGATCTTAATTTCAGAACAATATTAAACAGaatgatcttaatcagtcttactATGAATTTTCACCTTAtcttaagtaatttgaactctaAATAAGCACAATTCACCAATCAAATCATTCTGATTCATGTTCTTGATTCTAagccaaaaaaatagaatattttttgctttgatttaataatttttGCTTAATTTGCTAATTTTGCTTAGATTTTTGCTTCACTCGTTTTGAGACTTTAAAAGAATTATAGGAAAtcttactaaaataaattttctTACCCCATTGCCAGATTTATTTGCCTTATATAAGAATATTATTAGGGATTATTCACAGTGGTCGTGAATGGACTTTTATTTCTTCAGATTTTCCACAGTTCTATCATCAAAAATATTACGTTACACATAGAACTTGTGTAGGTGTCTGTAAATGTCTGTATTTTAGTAGAGAATCTTTCGTATTCTGGTTTCTTTCTAGTTGTGGTGGGAACAAAGTATTGTGcttattaaaaaagttattcCCATTATATTTACTCTCAAAAACTAACAATATAACAACGcatgttttgttagttttatatATTAACATACCATTTGCCATAAGTCAGACACTAGTATCGTATCTCATGGCTTTTttcatgtcccatggaag

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K19662 PRKCB; classical protein kinase C beta type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142943 lncRNA upstream 61827 23179282 ~ 23251816 (+) True G105804
TU142941 lncRNA upstream 78591 23178637 ~ 23235052 (+) True G105803
TU142940 lncRNA upstream 158855 23154435 ~ 23154788 (+) True G105802
TU142939 lncRNA upstream 160831 23152578 ~ 23152812 (+) True G105801
TU142934 lncRNA upstream 171742 23141394 ~ 23141901 (+) True G105796
TU143025 lncRNA downstream 10014 23390733 ~ 23397862 (+) True G105872
TU143036 lncRNA downstream 30564 23411283 ~ 23412044 (+) True G105879
TU143048 lncRNA downstream 65155 23445874 ~ 23453226 (+) True G105891
TU143074 lncRNA downstream 113356 23494075 ~ 23496556 (+) True G105906
TU143125 lncRNA downstream 199436 23580155 ~ 23583983 (+) False G105940
XM_022674906.1 mRNA upstream 8487 23292193 ~ 23305156 (+) True LOC103044794
XM_007260284.3 mRNA upstream 26715 23282731 ~ 23286928 (+) True LOC103045101
XM_007260264.3 mRNA upstream 493547 22810079 ~ 22820096 (+) True LOC103038624
XM_022674898.1 mRNA upstream 539436 22762438 ~ 22774207 (+) True LOC103039247
XM_022674897.1 mRNA upstream 624555 22672164 ~ 22689088 (+) True LOC103041008
XM_007260282.2 mRNA downstream 19552 23400271 ~ 23410018 (+) True cacng3
XM_022674912.1 mRNA downstream 54148 23434867 ~ 23439103 (+) True LOC103041889
XM_015602690.2 mRNA downstream 73737 23454456 ~ 23459515 (+) True LOC107197111
XM_015602691.2 mRNA downstream 74407 23455126 ~ 23459515 (+) False LOC107197111
XM_007238135.3 mRNA downstream 99737 23480456 ~ 23490205 (+) True plk1
XR_002650601.1 other upstream 493547 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 1945390 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 2284653 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 2320831 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 4390440 18919060 ~ 18923203 (+) True G104656
TU143216 other downstream 534916 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 606488 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 1030489 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 1981025 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 1981025 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile